Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 8.4e-37 156.4 72 100.0
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 3.9e-34 147.5 72 88.9
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 3.9e-34 147.5 72 88.9
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 8.7e-34 146.4 72 87.5
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 1.1e-33 146.0 72 87.5
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 1.5e-33 145.6 72 86.1
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 2.5e-33 144.8 72 88.9
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 2.5e-33 144.8 72 84.7
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 4.3e-33 144.1 72 87.5
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 5.6e-33 143.7 72 83.3
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.6e-33 143.7 72 83.3
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 5.6e-33 143.7 72 84.7
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 5.6e-33 143.7 72 83.3
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 84.7
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 9.6e-33 142.9 72 86.1
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 9.6e-33 142.9 72 84.7
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 83.3
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 1.3e-32 142.5 72 83.3
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.1e-32 141.7 72 83.3
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.1e-32 141.7 72 83.3
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 2.1e-32 141.7 72 83.3
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 84.7
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 83.3
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 4.8e-32 140.6 72 84.7
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 81.9
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 81.9
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 8.1e-32 139.8 72 86.1
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 1.1e-31 139.4 69 85.5
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 1.1e-31 139.4 72 83.3
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.4e-31 139.0 72 83.3
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 1.4e-31 139.0 72 80.6
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 1.4e-31 139.0 72 81.9
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 1.8e-31 138.7 72 81.9
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 1.8e-31 138.7 72 83.3
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 2.4e-31 138.3 72 81.9
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 3.1e-31 137.9 68 86.8
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 3.1e-31 137.9 68 86.8
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 3.1e-31 137.9 68 86.8
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 3.1e-31 137.9 72 80.6
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 3.1e-31 137.9 71 83.1
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 5.3e-31 137.1 72 81.9
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 6.9e-31 136.7 72 80.6
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 6.9e-31 136.7 71 80.3
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 6.9e-31 136.7 70 81.4
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 9.0e-31 136.3 72 80.6
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 1.5e-30 135.6 72 83.3
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 2.6e-30 134.8 72 83.3
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 2.6e-30 134.8 72 80.6
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 2.6e-30 134.8 72 79.2
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 7.6e-30 133.3 71 76.1
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 7.6e-30 133.3 70 77.1
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 1.0e-29 132.9 72 79.2
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 1.0e-29 132.9 71 77.5
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 1.3e-29 132.5 72 79.2
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 1.7e-29 132.1 71 76.1
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 1.7e-29 132.1 71 76.1
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 2.2e-29 131.7 72 77.8
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 2.2e-29 131.7 72 79.2
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 6.5e-29 130.2 72 76.4
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 8.4e-29 129.8 72 79.2
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 8.4e-29 129.8 70 75.7
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 1.4e-28 129.0 72 75.0
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 2.5e-28 128.3 70 78.6
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 4.2e-28 127.5 71 77.5
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 7.1e-28 126.7 70 75.7
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.3e-28 126.3 107 57.0
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.2e-27 125.9 107 56.1
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 2.1e-27 125.2 71 71.8
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 73.6
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 74.3
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 74.3
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 2.7e-27 124.8 70 74.3
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 2.7e-27 124.8 68 76.5
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 3.5e-27 124.4 72 72.2
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 3.5e-27 124.4 72 73.6
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 1.3e-26 122.5 71 71.8
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 6.7e-26 120.2 72 75.0
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 1.9e-25 118.6 70 67.1
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 7.4e-25 116.7 114 52.6
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 9.6e-25 116.3 72 70.8
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 1.6e-24 115.5 56 91.1
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 6.2e-24 113.6 56 87.5
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 6.2e-24 113.6 56 87.5
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 6.2e-24 113.6 56 87.5
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 6.2e-24 113.6 63 77.8
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 8.2e-24 113.2 56 85.7
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 1.4e-23 112.5 59 81.4
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 1.4e-23 112.5 67 68.7
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 2.4e-23 111.7 61 77.0
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 3.1e-23 111.3 56 83.9
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.0e-23 110.9 56 83.9
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 4.0e-23 110.9 63 73.0
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 4.0e-23 110.9 71 64.8
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.0e-23 109.8 57 78.9
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.5e-22 109.0 56 83.9
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 2.6e-22 108.2 56 80.4
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 3.4e-22 107.8 68 63.2
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 5.8e-22 107.1 56 80.4
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 5.8e-22 107.1 56 83.9
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 1.0e-21 106.3 52 88.5
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.3e-21 105.9 56 78.6
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 1.7e-21 105.5 57 75.4
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.7e-21 105.5 56 78.6
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 1.7e-21 105.5 56 78.6
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 2.9e-21 104.8 56 78.6
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 3.8e-21 104.4 56 76.8
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.4e-20 102.4 56 78.6
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 2.5e-20 101.7 56 78.6
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 3.5e-19 97.8 71 60.6
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 4.6e-19 97.4 56 75.0
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.3e-18 95.9 49 79.6
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 2.3e-18 95.1 56 71.4
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 5.1e-18 94.0 52 73.1
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.3e-17 90.9 55 67.3
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 4.3e-17 90.9 71 57.7
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 9.7e-17 89.7 44 86.4
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 9.7e-17 89.7 56 64.3
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.3e-16 89.4 69 53.6
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.2e-14 82.8 68 52.9
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 5.9e-14 80.5 72 50.0
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 7.7e-14 80.1 56 62.5
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 6.5e-13 77.0 42 73.8
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.4e-12 75.9 50 62.0
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 5.5e-12 73.9 65 47.7
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 2.3e-10 68.6 71 42.3
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 3.3e-09 64.7 50 58.0
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 5.7e-09 63.9 56 48.2
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 5.9e-06 53.9 30 70.0


User provided reference genes

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