Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 4.8e-275 950.7 520 100.0
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 6.9e-189 664.5 580 65.3
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.3e-187 660.2 580 64.7
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 5.1e-168 595.1 566 59.2
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.4e-165 587.0 572 60.7
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 4.0e-136 489.2 573 50.3
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.5e-111 407.5 599 43.9
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 9.8e-111 404.8 582 45.7
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.7e-108 396.7 563 45.8
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.0e-107 393.3 569 43.4
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.3e-106 389.4 538 44.6
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.4e-104 384.4 544 44.7
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 8.9e-104 381.7 570 42.6
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.5e-103 380.9 556 44.6
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 4.4e-103 379.4 574 41.1
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.8e-103 378.3 461 50.5
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 9.2e-101 371.7 564 41.5
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.0e-100 370.5 548 42.5
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 3.9e-99 366.3 552 43.3
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 3.9e-99 366.3 559 42.4
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 3.3e-98 363.2 577 40.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 3.3e-98 363.2 554 43.0
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.1e-97 360.5 538 41.6
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 3.6e-97 359.8 559 42.8
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 4.7e-97 359.4 538 41.1
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 8.1e-97 358.6 565 41.8
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.1e-96 358.2 573 41.2
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.3e-96 357.1 600 38.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 5.2e-96 355.9 553 43.0
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.9e-96 355.1 565 42.3
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.2e-95 354.8 568 40.7
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.2e-95 354.8 553 42.5
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.5e-95 354.4 554 41.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 4.9e-94 349.4 580 39.8
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.1e-93 348.2 465 44.1
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.4e-93 347.8 563 41.0
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.4e-93 347.1 547 42.8
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.1e-93 345.5 559 40.3
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.2e-92 344.7 556 39.7
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.2e-92 344.7 556 39.9
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.1e-92 344.0 556 40.6
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.6e-92 342.8 547 39.9
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 6.0e-92 342.4 544 38.8
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 6.0e-92 342.4 525 42.5
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.0e-91 341.7 555 40.5
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.3e-91 341.3 533 39.4
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.3e-91 341.3 555 40.7
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.3e-91 341.3 571 39.9
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 2.3e-91 340.5 536 39.7
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.3e-91 340.5 568 38.7
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 6.6e-91 339.0 555 39.8
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 2.5e-90 337.0 569 40.6
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.5e-90 337.0 567 39.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.5e-90 337.0 562 41.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 5.6e-90 335.9 573 40.0
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.2e-89 334.7 568 38.4
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.2e-89 334.7 568 38.4
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 2.1e-89 334.0 544 40.3
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.8e-89 333.6 567 40.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 3.6e-89 333.2 554 40.4
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 8.1e-89 332.0 579 38.7
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.1e-88 331.6 561 40.1
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.0e-88 329.7 570 38.4
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 4.0e-88 329.7 463 44.9
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.8e-88 328.9 581 37.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 8.9e-88 328.6 570 38.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.2e-87 328.2 537 39.5
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.5e-87 327.8 569 38.8
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.0e-87 327.4 566 38.0
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.6e-87 327.0 544 38.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 4.4e-87 326.2 553 38.7
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.8e-87 325.9 536 39.0
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 5.8e-87 325.9 583 37.7
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.6e-87 325.5 570 38.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 6.4e-86 322.4 569 40.8
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.4e-86 322.4 547 39.9
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 1.9e-85 320.9 611 36.7
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 4.1e-85 319.7 538 38.1
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 4.1e-85 319.7 536 39.4
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.0e-83 315.1 534 39.1
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.0e-83 315.1 551 39.0
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.3e-83 313.9 541 37.5
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.3e-83 313.9 549 38.6
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 3.9e-83 313.2 564 38.5
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 6.6e-83 312.4 541 37.3
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 8.6e-83 312.0 541 37.5
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.1e-82 311.6 566 40.1
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.9e-82 310.8 541 36.8
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.1e-81 307.4 537 35.6
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 2.8e-81 307.0 549 36.4
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.8e-81 307.0 539 36.4
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.6e-81 306.6 559 37.4
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.7e-81 306.2 555 37.7
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 8.1e-81 305.4 558 38.7
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.1e-80 305.1 547 36.9
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 4.0e-80 303.1 537 36.1
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 4.0e-80 303.1 538 37.0
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 5.2e-80 302.8 592 36.3
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 8.9e-80 302.0 436 42.7
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.2e-79 301.6 453 41.7
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.2e-79 301.6 570 36.7
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.5e-79 301.2 569 37.3
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.0e-79 300.8 369 48.8
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 3.4e-79 300.1 561 38.7
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.4e-78 295.8 428 43.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.1e-77 295.0 544 36.6
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 5.4e-77 292.7 433 41.3
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.2e-76 291.6 559 36.7
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 6.0e-76 289.3 581 35.8
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 3.9e-75 286.6 453 42.8
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 6.6e-75 285.8 492 39.0
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.7e-75 285.4 554 36.8
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.3e-73 281.6 541 35.1
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.6e-73 281.2 541 38.1
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.4e-72 278.1 561 37.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 6.9e-72 275.8 562 36.8
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 9.0e-72 275.4 561 34.4
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 9.0e-72 275.4 562 37.0
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.6e-68 264.6 550 34.2
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.9e-68 262.3 567 35.1
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-66 258.5 532 33.5
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-66 258.5 366 44.8
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.5e-66 258.1 386 40.2
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.5e-58 231.5 456 35.1
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 3.8e-54 216.9 384 36.2
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.3e-51 207.6 265 46.8
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.7e-50 203.0 541 30.3
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 3.7e-49 200.3 557 30.7
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.3e-46 191.8 382 34.6
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.2e-46 191.0 260 44.2
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-41 175.3 329 37.4
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.3e-38 165.2 356 34.8
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.3e-35 154.5 244 38.9
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 2.8e-33 147.5 458 29.3
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.1e-32 144.1 250 43.2
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.1e-28 131.3 227 38.3
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.4e-27 128.6 419 29.1
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.7e-26 123.2 184 47.8
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 7.4e-26 122.9 519 25.2
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 2.2e-25 121.3 439 25.5
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.1e-24 117.5 143 44.8
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 4.1e-24 117.1 158 38.0
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.6e-23 114.4 248 30.2
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.0e-22 112.5 415 26.0
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.0e-19 102.4 154 39.6
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.8e-19 101.7 164 42.7
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.0e-19 100.5 138 40.6
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.2e-17 94.7 98 49.0
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.4e-16 92.0 204 32.8
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 9.1e-16 89.4 123 39.8
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.6e-15 88.6 479 24.6
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 3.5e-15 87.4 529 22.9
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 5.0e-14 83.6 74 59.5
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 6.5e-14 83.2 111 40.5
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 1.5e-13 82.0 134 37.3
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.2e-13 80.9 94 54.3
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.2e-10 72.4 73 52.1
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.5e-10 72.0 180 30.6
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.5e-10 72.0 271 29.9
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.0e-10 71.6 123 41.5
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-09 68.9 78 55.1
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-08 65.5 152 33.6
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.8e-08 65.1 66 56.1
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.8e-08 65.1 66 56.1
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.1e-08 64.3 152 32.9
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 7.7e-07 59.7 119 38.7
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 7.7e-07 59.7 84 36.9
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-06 59.3 104 33.7
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 5.0e-06 57.0 65 44.6
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.5e-06 56.2 69 42.0


User provided reference genes

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