Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g032820 Amaranthus hybridus HOM05D006291 ORTHO05D007669 3.6e-62 241.5 130 100.0
EL10Ac2g03616 Beta vulgaris HOM05D006291 ORTHO05D007669 6.6e-56 220.7 130 90.0
AUR62020734 Chenopodium quinoa HOM05D006291 ORTHO05D007669 1.5e-55 219.5 130 88.5
AUR62027977 Chenopodium quinoa HOM05D006291 ORTHO05D007669 1.5e-55 219.5 130 88.5
Potri.006G079700 Populus trichocarpa HOM05D006291 ORTHO05D007669 3.0e-53 211.8 130 85.4
Manes.02G198400 Manihot esculenta HOM05D006291 ORTHO05D007669 5.2e-53 211.1 130 83.8
Sc23g0004310 Simmondsia chinensis HOM05D006291 ORTHO05D007669 1.2e-52 209.9 128 84.4
Sabra06G0060300 Salix brachista HOM05D006291 ORTHO05D007669 3.4e-52 208.4 130 84.6
CAN.G54.10 Capsicum annuum HOM05D006291 ORTHO05D007669 7.5e-52 207.2 128 82.0
PGSC0003DMG400013569 Solanum tuberosum HOM05D006291 ORTHO05D007669 7.5e-52 207.2 128 82.8
Actinidia38532 Actinidia chinensis HOM05D006291 ORTHO05D007669 2.2e-51 205.7 128 82.8
Nitab4.5_0003139g0110 Nicotiana tabacum HOM05D006291 ORTHO05D007669 2.8e-51 205.3 128 81.2
PSO063G7114 Papaver somniferum HOM05D006291 ORTHO05D007669 8.3e-51 203.8 128 83.6
Solyc07g042620.4 Solanum lycopersicum HOM05D006291 ORTHO05D007669 8.3e-51 203.8 126 82.5
Sopen07g022310 Solanum pennellii HOM05D006291 ORTHO05D007669 8.3e-51 203.8 126 82.5
Nn8g40626 Nelumbo nucifera HOM05D006291 ORTHO05D007669 1.4e-50 203.0 130 82.3
PSO170G1648 Papaver somniferum HOM05D006291 ORTHO05D007669 1.4e-50 203.0 128 82.8
Gohir.D05G287200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 2.4e-50 202.2 128 80.5
HanXRQChr12g0358571 Helianthus annuus HOM05D006291 ORTHO05D007669 3.1e-50 201.8 130 79.2
Duzib128G2031 Durio zibethinus HOM05D006291 ORTHO05D007669 4.1e-50 201.4 130 81.5
Actinidia02463 Actinidia chinensis HOM05D006291 ORTHO05D007669 9.2e-50 200.3 128 82.0
CiPaw.16G104700 Carya illinoinensis HOM05D006291 ORTHO05D007669 1.2e-49 199.9 130 80.0
COL.COLO4_05650 Corchorus olitorius HOM05D006291 ORTHO05D007669 1.2e-49 199.9 128 82.0
Duzib128G1629 Durio zibethinus HOM05D006291 ORTHO05D007669 1.2e-49 199.9 130 80.8
Potri.018G149200 Populus trichocarpa HOM05D006291 ORTHO05D007669 1.2e-49 199.9 130 80.8
TAR362G0416 Trochodendron aralioides HOM05D006291 ORTHO05D007669 1.2e-49 199.9 130 80.8
ECA234G1508 Erigeron canadensis HOM05D006291 ORTHO05D007669 1.6e-49 199.5 130 78.5
Peaxi162Scf00474g00519 Petunia axillaris HOM05D006291 ORTHO05D007669 1.6e-49 199.5 128 79.7
Aqoxy7G02914 Aquilegia oxysepala HOM05D006291 ORTHO05D007669 2.0e-49 199.1 128 79.7
HanXRQChr10g0309491 Helianthus annuus HOM05D006291 ORTHO05D007669 2.0e-49 199.1 130 79.2
SGA_v2.0_scaffold21G09601 Striga asiatica HOM05D006291 ORTHO05D007669 2.7e-49 198.7 128 79.7
Rhsim01G0107900 Rhododendron simsii HOM05D006291 ORTHO05D007669 3.5e-49 198.4 127 80.3
MD13G1231800 Malus domestica HOM05D006291 ORTHO05D007669 4.5e-49 198.0 130 79.2
RcHm_v2.0_Chr4g0397141 Rosa chinensis HOM05D006291 ORTHO05D007669 4.5e-49 198.0 130 78.5
Migut.L01922 Erythranthe guttata HOM05D006291 ORTHO05D007669 5.9e-49 197.6 128 79.7
Eucgr.G00957 Eucalyptus grandis HOM05D006291 ORTHO05D007669 5.9e-49 197.6 130 77.7
GSVIVG01032270001 Vitis vinifera HOM05D006291 ORTHO05D007669 5.9e-49 197.6 130 80.0
arahy.Tifrunner.gnm1.ann1.8H1PJC Arachis hypogaea HOM05D006291 ORTHO05D007669 1.7e-48 196.1 128 77.3
Prupe.1G063000 Prunus persica HOM05D006291 ORTHO05D007669 1.7e-48 196.1 130 79.2
THA.LOC104826574 Tarenaya hassleriana HOM05D006291 ORTHO05D007669 2.9e-48 195.3 128 78.9
FAN07G2657 Fragaria x ananassa HOM05D006291 ORTHO05D007669 5.0e-48 194.5 130 76.9
Phvul.011G206700 Phaseolus vulgaris HOM05D006291 ORTHO05D007669 5.0e-48 194.5 130 76.9
TPR.G27823 Trifolium pratense HOM05D006291 ORTHO05D007669 5.0e-48 194.5 128 76.6
MSTRG.10473 Avicennia marina HOM05D006291 ORTHO05D007669 6.6e-48 194.1 128 78.1
MD16G1236600 Malus domestica HOM05D006291 ORTHO05D007669 6.6e-48 194.1 130 78.5
Ca_23954_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 8.6e-48 193.7 128 76.6
Cc06_g23850 Coffea canephora HOM05D006291 ORTHO05D007669 8.6e-48 193.7 128 78.9
CSS0003994 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 1.1e-47 193.4 128 79.7
CSS0013846 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 1.1e-47 193.4 128 79.7
Lj3g0009914 Lotus japonicus HOM05D006291 ORTHO05D007669 1.1e-47 193.4 130 75.4
Gohir.A05G286200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 1.5e-47 193.0 122 80.3
Gorai.009G302200 Gossypium raimondii HOM05D006291 ORTHO05D007669 1.5e-47 193.0 130 77.7
FvH4_4g05950 Fragaria vesca HOM05D006291 ORTHO05D007669 1.9e-47 192.6 130 76.2
PGR044G0028 Punica granatum HOM05D006291 ORTHO05D007669 1.9e-47 192.6 130 75.4
FAN22G0966 Fragaria x ananassa HOM05D006291 ORTHO05D007669 2.5e-47 192.2 130 76.2
Psat0s418g0040 Pisum sativum HOM05D006291 ORTHO05D007669 2.5e-47 192.2 128 75.8
VMungo1127G1563 Vigna mungo HOM05D006291 ORTHO05D007669 3.3e-47 191.8 130 75.4
Ciclev10009894m.g Citrus clementina HOM05D006291 ORTHO05D007669 4.3e-47 191.4 130 76.2
Lalb_Chr01g0007741 Lupinus albus HOM05D006291 ORTHO05D007669 4.3e-47 191.4 128 75.8
Carub.0013s0004 Capsella rubella HOM05D006291 ORTHO05D007669 5.6e-47 191.0 128 77.3
Glyma.15G235500 Glycine max HOM05D006291 ORTHO05D007669 5.6e-47 191.0 130 74.6
Zm00001eb240760 Zea mays HOM05D006291 ORTHO05D007669 5.6e-47 191.0 130 70.8
Glyma.13G197100 Glycine max HOM05D006291 ORTHO05D007669 7.3e-47 190.7 130 74.6
Thecc.10G119800 Theobroma cacao HOM05D006291 ORTHO05D007669 7.3e-47 190.7 130 79.2
TWI63G0490 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 1.2e-46 189.9 128 77.3
CANSAT56G1353 Cannabis sativa HOM05D006291 ORTHO05D007669 1.6e-46 189.5 130 76.9
CDE02G3570 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 3.6e-46 188.3 125 76.8
arahy.Tifrunner.gnm1.ann1.SCY2K5 Arachis hypogaea HOM05D006291 ORTHO05D007669 4.7e-46 188.0 128 76.6
ATR0580G035 Amborella trichopoda HOM05D006291 ORTHO05D007669 6.1e-46 187.6 126 74.6
CDE06G0918 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 1.4e-45 186.4 127 74.8
CsaV3_2G009230 Cucumis sativus L. HOM05D006291 ORTHO05D007669 1.8e-45 186.0 119 81.5
HPP92_021942 Vanilla planifolia HOM05D006291 ORTHO05D007669 2.3e-45 185.7 130 73.1
CSS0029803 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 5.2e-45 184.5 134 75.4
CANSAT56G3141 Cannabis sativa HOM05D006291 ORTHO05D007669 6.8e-45 184.1 130 75.4
Ca_23960_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 6.8e-45 184.1 120 77.5
HPP92_021968 Vanilla planifolia HOM05D006291 ORTHO05D007669 8.9e-45 183.7 127 73.2
AT2G07340 Arabidopsis thaliana HOM05D006291 ORTHO05D007669 1.5e-44 183.0 128 73.4
Hund19355 Selenicereus undatus HOM05D006291 ORTHO05D007669 2.0e-44 182.6 122 82.8
unitig_8.g3543 Utricularia gibba HOM05D006291 ORTHO05D007669 3.4e-44 181.8 126 73.8
FAN12G2114 Fragaria x ananassa HOM05D006291 ORTHO05D007669 7.5e-44 180.6 132 72.7
CDE06G1428 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 9.8e-44 180.3 127 74.8
Lsat_1_v5_gn_5_80980 Lactuca sativa HOM05D006291 ORTHO05D007669 1.3e-43 179.9 131 74.8
Sed0008839 Sechium edule HOM05D006291 ORTHO05D007669 8.3e-43 177.2 121 76.9
Sp6g13890 Schrenkiella parvula HOM05D006291 ORTHO05D007669 9.2e-42 173.7 128 73.4
MELO3C003910.2 Cucumis melo HOM05D006291 ORTHO05D007669 2.0e-41 172.6 119 77.3
Thhalv10015026m.g Eutrema salsugineum HOM05D006291 ORTHO05D007669 7.8e-41 170.6 128 73.4
Oeu028819.1 Olea europaea HOM05D006291 ORTHO05D007669 3.9e-40 168.3 112 77.7
BcaB01g04158 Brassica carinata HOM05D006291 ORTHO05D007669 1.1e-39 166.8 136 65.4
Aa31LG8G11030 Aethionema arabicum HOM05D006291 ORTHO05D007669 1.9e-39 166.0 171 56.7
BcaC01g06135 Brassica carinata HOM05D006291 ORTHO05D007669 5.6e-39 164.5 128 69.5
C03p18890 Brassica napus HOM05D006291 ORTHO05D007669 5.6e-39 164.5 128 69.5
A03p16050 Brassica napus HOM05D006291 ORTHO05D007669 1.6e-38 162.9 128 68.8
Medtr8g039140 Medicago truncatula HOM05D006291 ORTHO05D007669 8.0e-38 160.6 103 77.7
Dinv26485 Davidia involucrata HOM05D006291 ORTHO05D007669 1.1e-37 160.2 125 72.0
DCAR_020455 Daucus carota HOM05D006291 ORTHO05D007669 2.3e-37 159.1 103 79.6
Pp3c19_4350 Physcomitrium patens HOM05D006291 ORTHO05D007669 2.6e-36 155.6 128 61.7
Mapoly0027s0144 Marchantia polymorpha HOM05D006291 ORTHO05D007669 4.4e-36 154.8 128 60.2
MBI16_g09344_MAGBIO Magnolia biondii HOM05D006291 ORTHO05D007669 1.1e-34 150.2 185 53.0
Nitab4.5_0000170g0080 Nicotiana tabacum HOM05D006291 ORTHO05D007669 3.2e-34 148.7 96 79.2
AL3G44130 Arabidopsis lyrata HOM05D006291 ORTHO05D007669 4.1e-34 148.3 98 76.5
Actinidia02472 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.2e-33 146.7 98 79.6
TWI32G0019 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 6.0e-33 144.4 116 66.4
Atru.BG.15.p Acer truncatum HOM05D006291 ORTHO05D007669 3.9e-32 141.7 101 75.2
Dinv12620 Davidia involucrata HOM05D006291 ORTHO05D007669 2.1e-30 136.0 92 78.3
SMO200G0161 Selaginella moellendorffii HOM05D006291 ORTHO05D007669 2.3e-29 132.5 120 57.5
AagrBONN_evm.TU.Sc2ySwM_362.1895 Anthoceros agrestis HOM05D006291 ORTHO05D007669 1.2e-25 120.2 100 56.0
BcaC04g20645 Brassica carinata HOM05D006291 ORTHO05D007669 6.0e-25 117.9 92 68.5
Nitab4.5_0002603g0030 Nicotiana tabacum HOM05D006291 ORTHO05D007669 2.3e-24 115.9 72 80.6
BraA03t10896Z Brassica rapa HOM05D006291 ORTHO05D007669 1.9e-23 112.8 94 66.0
BolC9t56988H Brassica oleracea HOM05D006291 ORTHO05D007669 8.1e-22 107.5 92 65.2
C09p41100 Brassica napus HOM05D006291 ORTHO05D007669 4.0e-21 105.1 93 63.4
SalBow3G3584 Salvia bowleyana HOM05D006291 ORTHO05D007669 2.0e-20 102.8 105 58.1
Actinidia07563 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.1e-18 97.1 66 78.8
SEGI_05817 Sequoiadendron giganteum HOM05D006291 ORTHO05D007669 1.9e-18 96.3 72 69.4
Os02g0462900 Oryza sativa ssp. japonica HOM05D006291 ORTHO05D007669 4.2e-18 95.1 63 69.8
BolC3t14281H Brassica oleracea HOM05D006291 ORTHO05D007669 1.6e-17 93.2 64 75.0
BcaB08g35517 Brassica carinata HOM05D006291 ORTHO05D007669 2.1e-17 92.8 64 73.4
CARHR104040 Cardamine hirsuta HOM05D006291 ORTHO05D007669 2.1e-17 92.8 62 77.4
ClCG11G011210 Citrullus lanatus HOM05D006291 ORTHO05D007669 3.5e-17 92.0 62 75.8
Cpa.g.sc91.61 Carica papaya HOM05D006291 ORTHO05D007669 1.7e-16 89.7 57 80.7
BolC3t14280H Brassica oleracea HOM05D006291 ORTHO05D007669 5.1e-16 88.2 62 71.0
PRCOL_00006384 Prasinoderma coloniale HOM05D006291 ORTHO05D007669 4.8e-14 81.6 117 35.0
CBR_g16047 Chara braunii HOM05D006291 ORTHO05D007669 9.3e-10 67.4 61 54.1
vmacro20755 Vaccinium macrocarpon HOM05D006291 ORTHO05D007669 2.7e-09 65.9 56 67.9
MCO11G208 Micromonas commoda HOM05D006291 ORTHO05D007669 4.6e-09 65.1 115 29.6
Haze_19088 Corylus avellana HOM05D000287 ORTHO05D000319 7.8e-09 64.3 42 73.8


User provided reference genes

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