Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 9.5e-136 486.9 253 100.0
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 3.1e-78 295.8 279 60.9
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 4.1e-78 295.4 283 60.8
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 6.5e-76 288.1 262 59.9
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 2.9e-68 262.7 206 65.0
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 8.2e-63 244.6 263 52.5
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 5.3e-62 241.9 246 51.6
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 1.0e-60 237.7 258 51.2
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 3.2e-59 232.6 266 50.0
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 9.4e-59 231.1 243 52.3
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 1.6e-58 230.3 265 47.2
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 1.6e-58 230.3 263 49.4
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 1.6e-58 230.3 239 52.7
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 3.6e-58 229.2 239 52.3
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 4.7e-58 228.8 265 49.1
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 8.0e-58 228.0 263 49.0
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 1.0e-57 227.6 246 51.6
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 1.8e-57 226.9 254 49.2
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 3.0e-57 226.1 266 49.6
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 6.8e-57 224.9 246 50.8
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 8.8e-57 224.6 236 49.6
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 8.8e-57 224.6 241 51.0
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.5e-56 223.8 264 46.6
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 2.6e-56 223.0 247 51.8
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 2.6e-56 223.0 273 48.4
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 3.4e-56 222.6 254 48.4
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 4.4e-56 222.2 266 49.2
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 5.7e-56 221.9 264 48.5
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 5.7e-56 221.9 266 49.2
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 7.5e-56 221.5 242 50.4
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 1.7e-55 220.3 245 50.2
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 4.8e-55 218.8 265 45.3
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 8.3e-55 218.0 254 47.2
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 8.3e-55 218.0 266 48.9
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 1.1e-54 217.6 241 48.1
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 1.1e-54 217.6 254 48.8
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 1.1e-54 217.6 244 48.4
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 1.1e-54 217.6 262 48.5
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 1.4e-54 217.2 238 49.6
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 4.1e-54 215.7 262 46.2
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 7.0e-54 214.9 264 47.3
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 7.0e-54 214.9 240 50.0
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 3.8e-52 209.1 235 48.1
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 5.0e-52 208.8 245 47.3
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 1.1e-51 207.6 268 44.0
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 1.5e-51 207.2 266 43.6
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 1.5e-51 207.2 242 48.8
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 1.5e-51 207.2 249 46.6
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.9e-51 206.8 195 55.4
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.9e-51 206.8 195 55.4
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 2.5e-51 206.5 226 48.7
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 3.3e-51 206.1 259 44.4
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 5.5e-51 205.3 238 47.9
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 7.2e-51 204.9 231 48.1
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 7.2e-51 204.9 231 49.8
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 7.2e-51 204.9 247 45.7
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 1.2e-50 204.1 262 42.7
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 2.8e-50 203.0 259 43.6
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 8.0e-50 201.4 259 42.5
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.0e-49 201.1 237 48.5
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.8e-49 200.3 230 47.0
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 2.3e-49 199.9 246 43.9
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 4.0e-49 199.1 259 42.1
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 4.0e-49 199.1 251 43.8
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 4.0e-49 199.1 234 48.3
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 5.2e-49 198.7 232 46.6
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 5.2e-49 198.7 244 43.4
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 8.9e-49 198.0 236 47.5
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 1.2e-48 197.6 232 47.4
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 2.6e-48 196.4 228 46.5
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 2.6e-48 196.4 280 41.8
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 3.4e-48 196.1 258 44.6
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 4.4e-48 195.7 232 45.3
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 7.5e-48 194.9 267 43.4
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 9.8e-48 194.5 243 44.0
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 9.8e-48 194.5 237 46.4
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 4.9e-47 192.2 244 43.9
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 6.3e-47 191.8 227 47.1
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 1.8e-46 190.3 266 42.1
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 5.4e-46 188.7 245 43.7
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 1.0e-44 184.5 230 42.6
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 3.8e-44 182.6 268 41.0
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 5.0e-44 182.2 289 38.1
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 8.6e-44 181.4 263 41.1
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 1.9e-43 180.3 261 40.2
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 2.5e-43 179.9 265 42.6
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 2.5e-43 179.9 244 42.2
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 2.5e-43 179.9 250 43.2
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 3.3e-43 179.5 288 36.8
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 7.3e-43 178.3 244 41.4
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 9.5e-43 177.9 245 42.0
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 1.6e-42 177.2 261 41.0
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 2.8e-42 176.4 236 41.1
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 1.0e-41 174.5 273 39.2
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 1.8e-41 173.7 244 41.0
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 1.8e-41 173.7 244 41.0
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 3.0e-41 172.9 238 42.4
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 1.2e-40 171.0 260 39.6
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 1.2e-40 171.0 244 40.6
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 1.2e-40 171.0 260 39.6
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 1.2e-40 171.0 241 40.2
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 4.4e-40 169.1 216 45.4
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.7e-39 167.2 244 42.2
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 5.4e-38 162.2 188 45.2
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 3.5e-37 159.5 230 40.4
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 1.0e-36 157.9 214 45.8
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 1.7e-36 157.1 235 40.9
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 3.0e-36 156.4 234 42.3
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 6.6e-36 155.2 244 38.9
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 3.3e-35 152.9 252 35.3
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.2e-32 144.4 167 43.7
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 1.5e-32 144.1 262 36.6
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 3.4e-32 142.9 252 35.7
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 5.8e-32 142.1 230 36.5
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.5e-29 132.9 276 34.4
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 3.0e-28 129.8 245 33.9
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 5.0e-28 129.0 159 42.8
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 1.4e-25 120.9 230 33.9
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 1.8e-25 120.6 133 45.1
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 1.2e-24 117.9 202 36.1
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 4.4e-24 115.9 133 42.9
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 4.6e-21 105.9 216 33.3
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 7.8e-21 105.1 80 53.8
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 1.7e-20 104.0 132 39.4
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 5.1e-20 102.4 80 52.5
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 3.3e-19 99.8 77 58.4
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 2.8e-18 96.7 65 66.2
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 1.7e-15 87.4 239 28.9
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 8.4e-15 85.1 114 45.6
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 4.6e-13 79.3 134 35.8
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 8.7e-12 75.1 101 44.6
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 5.6e-11 72.4 57 57.9
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 3.1e-09 66.6 46 60.9
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 1.5e-08 64.3 290 24.8
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.5e-08 64.3 55 49.1
Cfa022755 Carpinus fangiana HOM05D005274 ORTHO05D006485 3.4e-08 63.2 164 30.5
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 8.4e-07 58.5 38 57.9
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 5.4e-06 55.8 240 25.8


User provided reference genes

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