Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1456.4 737 100.0
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1432.9 737 98.0
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1353.2 744 91.0
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1345.1 746 90.1
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1283.5 745 87.0
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 685 90.7
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 738 83.3
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 740 82.2
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 741 82.2
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1231.5 737 82.9
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 743 81.4
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1229.5 742 81.7
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1228.0 736 81.7
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 741 81.1
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 737 81.7
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 738 80.9
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 737 81.1
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 742 81.0
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 744 81.2
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1220.3 741 81.1
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 744 80.5
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1219.1 736 81.4
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 738 80.9
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1218.4 738 80.8
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 742 80.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 737 80.9
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 741 81.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 736 81.7
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 741 80.8
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 745 81.5
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1211.4 741 80.2
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 742 80.1
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 739 82.1
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 777 77.7
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1209.5 741 80.4
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 741 81.6
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 742 79.8
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1208.4 737 80.9
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 743 82.1
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 738 79.9
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1207.6 741 79.8
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 737 81.0
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 737 80.6
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1205.7 740 82.0
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1204.5 743 80.8
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1204.5 741 79.1
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 738 82.2
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 742 79.5
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 740 79.9
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 742 79.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 737 80.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1200.3 743 79.3
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1200.3 738 80.5
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 745 80.8
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1199.5 743 79.0
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 737 80.2
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 741 79.2
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 737 81.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1196.0 740 79.5
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 738 80.9
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 738 79.9
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 738 81.3
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1194.9 738 80.8
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 745 80.4
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1193.3 737 80.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 751 79.9
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1192.2 742 79.6
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 737 79.9
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 742 79.0
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1189.1 738 80.4
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 741 78.5
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1188.3 738 79.0
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1187.9 743 78.6
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 794 75.3
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 751 79.2
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 742 78.4
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1186.4 710 81.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 741 78.3
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 743 77.9
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1182.2 742 78.3
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1181.8 741 78.3
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1181.8 742 77.9
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1180.6 744 78.6
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1180.2 713 80.5
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 742 78.2
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 743 78.2
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1179.5 742 78.2
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1178.3 742 78.0
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1177.5 743 77.9
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1177.2 735 78.4
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1175.2 742 77.9
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1175.2 742 77.9
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1174.5 713 80.4
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 743 78.1
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1172.5 742 77.6
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1171.0 737 79.0
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1170.6 741 77.3
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1169.5 740 77.0
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1167.1 774 75.2
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1162.9 747 76.4
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1161.4 731 77.4
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1160.6 742 77.9
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1154.0 838 70.5
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1140.2 651 85.1
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1134.0 742 76.3
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1133.6 750 75.5
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1123.6 651 83.7
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1121.3 740 74.9
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1120.5 651 83.6
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1115.9 662 82.5
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1107.0 741 74.2
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1100.9 720 75.4
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1083.9 651 82.3
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1080.5 741 74.5
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 5.0e-310 1067.4 750 71.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 6.1e-308 1060.4 1028 56.8
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.2e-300 1036.2 622 82.8
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 3.6e-292 1008.1 745 70.5
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.0e-286 989.9 674 70.2
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 9.2e-280 966.8 678 70.4
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 3.8e-278 961.4 672 69.8
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.9e-277 959.1 672 70.7
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.9e-277 959.1 672 70.7
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.3e-277 958.0 681 70.2
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.6e-277 957.6 672 70.5
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 3.3e-253 878.6 592 74.0
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 1.7e-249 866.3 592 73.5
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 8.4e-249 864.0 674 61.7
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.8e-227 793.1 682 57.5
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.7e-223 779.2 680 57.1
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.8e-212 742.7 673 56.0
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 5.5e-200 701.8 674 59.9
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.4e-197 692.2 676 52.5
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 3.1e-179 632.9 702 48.1
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 2.2e-156 557.0 361 74.8
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.6e-154 549.3 305 85.6
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 7.8e-154 548.5 321 84.4
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.9e-136 490.7 297 83.5
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 9.9e-133 478.4 301 79.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 5.1e-121 439.5 303 71.6
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.4e-116 422.5 288 70.8
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 7.1e-107 392.5 236 81.8
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.6e-95 354.8 241 73.4
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.0e-88 331.3 219 77.2
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.4e-85 320.5 292 61.0
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.7e-85 319.3 292 60.6
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 2.2e-84 317.8 223 72.2
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 3.7e-71 273.9 171 77.2
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.3e-65 254.6 125 96.0
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 4.0e-65 253.8 364 38.2
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.2e-61 242.3 144 80.6
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 5.0e-60 236.9 400 41.2
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 2.7e-58 231.1 113 95.6
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.7e-58 231.1 260 51.2
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.7e-45 188.0 117 77.8
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 9.5e-43 179.5 136 66.9
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.6e-40 171.4 164 57.9
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 4.1e-38 164.1 122 68.0
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 9.2e-38 162.9 102 72.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 3.6e-34 151.0 83 81.9
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 5.8e-32 143.7 137 51.8
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 2.7e-29 134.8 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 2.3e-28 131.7 105 62.9
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 4.3e-27 127.5 116 59.5
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 2.1e-26 125.2 139 53.2
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 1.4e-25 122.5 61 88.5
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 7.6e-24 116.7 99 62.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.9e-23 114.8 221 30.8
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.8e-21 106.7 136 47.1
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.2e-15 88.6 56 75.0
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.1e-14 86.3 49 75.5
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 8.7e-12 76.6 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 4.3e-11 74.3 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 1.6e-10 72.4 38 92.1


User provided reference genes

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