Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 3.8e-69 264.6 126 100.0
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 7.3e-52 207.2 124 78.2
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 2.8e-51 205.3 124 78.2
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 1.0e-50 203.4 126 76.2
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 9.8e-49 196.8 125 71.2
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 6.4e-48 194.1 125 73.6
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 7.0e-47 190.7 124 72.6
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 7.0e-47 190.7 125 72.8
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 1.6e-46 189.5 124 71.8
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 2.0e-46 189.1 125 71.2
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 2.7e-46 188.7 126 73.8
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 3.5e-46 188.3 127 74.0
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 4.6e-46 188.0 127 72.4
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 7.8e-46 187.2 124 70.2
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 7.8e-46 187.2 120 73.3
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.0e-45 186.8 127 73.2
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.3e-45 186.4 125 68.8
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 1.3e-45 186.4 124 71.0
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 1.3e-45 186.4 121 72.7
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 1.3e-45 186.4 122 69.7
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 1.7e-45 186.0 121 73.6
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.7e-45 186.0 124 71.0
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 1.7e-45 186.0 124 71.0
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 3.9e-45 184.9 124 70.2
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 5.0e-45 184.5 127 71.7
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 5.0e-45 184.5 125 71.2
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 8.6e-45 183.7 127 70.1
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 2.5e-44 182.2 127 67.7
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 3.3e-44 181.8 120 71.7
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 3.3e-44 181.8 124 67.7
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 4.3e-44 181.4 125 68.8
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 5.6e-44 181.0 125 68.0
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 9.5e-44 180.3 123 70.7
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 1.2e-43 179.9 122 68.0
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 1.2e-43 179.9 122 68.0
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.2e-43 179.9 125 67.2
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 4.7e-43 177.9 123 68.3
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.1e-42 176.8 126 68.3
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 1.4e-42 176.4 125 68.8
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 2.3e-42 175.6 123 67.5
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 3.1e-42 175.3 123 64.2
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 3.1e-42 175.3 125 66.4
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 3.1e-42 175.3 123 65.0
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 4.0e-42 174.9 125 68.0
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 5.2e-42 174.5 120 65.0
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 5.2e-42 174.5 125 65.6
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 6.8e-42 174.1 125 66.4
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 8.9e-42 173.7 123 66.7
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 8.9e-42 173.7 122 65.6
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 8.9e-42 173.7 127 68.5
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 8.9e-42 173.7 124 65.3
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 8.9e-42 173.7 123 68.3
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 1.2e-41 173.3 120 68.3
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 1.5e-41 172.9 125 67.2
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 1.5e-41 172.9 124 68.5
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 2.6e-41 172.2 124 68.5
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 2.6e-41 172.2 121 66.9
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 2.6e-41 172.2 123 63.4
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 9.8e-41 170.2 124 66.9
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 9.8e-41 170.2 123 64.2
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 1.3e-40 169.9 125 64.0
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 1.3e-40 169.9 125 64.8
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 1.7e-40 169.5 123 61.8
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 1.7e-40 169.5 125 63.2
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 2.2e-40 169.1 119 65.5
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 2.2e-40 169.1 126 65.9
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 4.9e-40 167.9 120 66.7
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 6.4e-40 167.5 123 62.6
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 8.3e-40 167.2 124 62.1
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 1.1e-39 166.8 125 66.4
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 1.1e-39 166.8 124 61.3
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 2.4e-39 165.6 125 68.8
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 2.4e-39 165.6 129 61.2
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 3.2e-39 165.2 120 63.3
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 4.1e-39 164.9 122 63.9
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 7.1e-39 164.1 126 61.9
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 1.2e-38 163.3 125 64.8
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 1.2e-38 163.3 122 61.5
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 2.7e-38 162.2 123 65.0
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 2.7e-38 162.2 123 65.0
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 3.5e-38 161.8 123 64.2
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 3.5e-38 161.8 123 64.2
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 3.5e-38 161.8 123 64.2
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 4.6e-38 161.4 121 61.2
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 6.0e-38 161.0 125 63.2
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 7.8e-38 160.6 125 62.4
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 7.8e-38 160.6 123 64.2
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 1.3e-37 159.8 124 59.7
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 1.3e-37 159.8 123 64.2
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 1.3e-37 159.8 124 61.3
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 1.7e-37 159.5 119 65.5
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 3.0e-37 158.7 125 58.4
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 3.9e-37 158.3 121 60.3
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 3.9e-37 158.3 119 63.9
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 5.1e-37 157.9 125 58.4
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 6.6e-37 157.5 122 63.1
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 6.6e-37 157.5 126 61.1
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 6.6e-37 157.5 101 73.3
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 1.5e-36 156.4 123 61.8
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 1.9e-36 156.0 124 57.3
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 2.5e-36 155.6 123 61.8
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 3.3e-36 155.2 123 59.3
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 7.3e-36 154.1 122 61.5
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 7.3e-36 154.1 122 61.5
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 9.5e-36 153.7 125 56.8
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 2.1e-35 152.5 116 62.9
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 8.1e-35 150.6 121 58.7
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 1.8e-34 149.4 123 61.0
EL10Ac5g11896 Beta vulgaris HOM05D005465 ORTHO05D006612 7.6e-33 144.1 97 72.2
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.3e-32 143.3 124 58.9
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.9e-32 141.4 125 54.4
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 1.3e-29 133.3 125 53.6
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.3e-29 133.3 125 52.8
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 1.8e-26 122.9 77 68.8
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 6.8e-26 120.9 95 56.8
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 1.7e-24 116.3 79 69.6
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 1.7e-24 116.3 127 50.4
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 6.4e-24 114.4 75 65.3
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 1.2e-22 110.2 127 48.8
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 6.0e-22 107.8 115 49.6
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 7.8e-22 107.5 69 71.0
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 8.7e-21 104.0 115 48.7
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 2.1e-19 99.4 120 45.0
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 6.9e-18 94.4 67 67.2
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 9.9e-17 90.5 125 41.6
BcaB01g05638 Brassica carinata HOM05D005465 ORTHO05D006612 7.1e-15 84.3 72 55.6
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 3.5e-14 82.0 66 60.6
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 1.0e-13 80.5 128 33.6
CBR_g37656 Chara braunii HOM05D005465 ORTHO05D006612 6.6e-13 77.8 102 40.2
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 1.9e-12 76.3 75 49.3
SMO263G0026 Selaginella moellendorffii HOM05D005465 ORTHO05D006612 2.5e-12 75.9 126 32.5
AagrBONN_evm.TU.Sc2ySwM_362.2833 Anthoceros agrestis HOM05D005465 ORTHO05D006612 7.4e-12 74.3 66 48.5
Cre12.g484700 Chlamydomonas reinhardtii HOM05D005465 ORTHO05D006612 3.1e-10 68.9 78 44.9
Pp3c16_5680 Physcomitrium patens HOM05D005465 ORTHO05D006612 6.9e-10 67.8 119 35.3
MCO16G501 Micromonas commoda HOM05D005465 ORTHO05D006612 4.5e-09 65.1 62 48.4
Lsat_1_v5_gn_4_50580 Lactuca sativa HOM05D005465 ORTHO05D006612 5.8e-09 64.7 61 52.5
SGA_v2.0_scaffold187G40263 Striga asiatica HOM05D005465 ORTHO05D006612 2.7e-06 55.8 99 37.4
Peaxi162Scf00991g00114 Petunia axillaris HOM05D005465 ORTHO05D006612 6.0e-06 54.7 124 34.7
PRCOL_00003291 Prasinoderma coloniale HOM05D005465 ORTHO05D006612 7.9e-06 54.3 67 43.3


User provided reference genes

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