Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 7.8e-256 886.7 479 100.0
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 1.1e-113 414.5 558 49.5
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 5.7e-113 412.1 449 61.7
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.4e-98 364.4 400 58.5
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.1e-81 308.1 406 50.5
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 3.5e-70 270.0 365 47.4
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 1.5e-65 254.6 423 43.0
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 9.8e-49 198.7 449 38.8
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 1.3e-48 198.4 446 36.5
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 6.4e-48 196.1 419 37.5
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 2.4e-47 194.1 491 36.3
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 4.1e-47 193.4 387 39.3
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 2.7e-46 190.7 460 37.2
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 4.6e-46 189.9 444 37.4
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 4.6e-46 189.9 445 37.5
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 3.3e-44 183.7 424 36.3
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 3.6e-43 180.3 438 35.8
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 6.2e-43 179.5 439 34.2
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 3.1e-42 177.2 443 36.6
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 3.1e-42 177.2 439 36.0
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 6.8e-42 176.0 381 37.5
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 1.5e-41 174.9 404 34.4
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.0e-41 174.5 418 36.8
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 3.4e-41 173.7 421 36.8
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 3.4e-41 173.7 318 39.9
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 9.8e-41 172.2 435 35.9
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 2.9e-40 170.6 399 38.3
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 3.7e-40 170.2 406 35.7
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 4.9e-40 169.9 462 32.5
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 1.1e-39 168.7 438 35.2
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 1.1e-39 168.7 431 35.5
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 1.4e-39 168.3 480 34.0
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.9e-39 167.9 365 36.7
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 2.7e-38 164.1 411 37.7
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 1.7e-37 161.4 360 36.7
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 3.0e-37 160.6 358 36.9
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 3.0e-37 160.6 428 37.4
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 3.9e-37 160.2 460 35.4
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 3.9e-37 160.2 394 36.8
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 8.6e-37 159.1 288 39.6
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 4.3e-36 156.8 378 37.3
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 5.6e-36 156.4 437 34.8
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 1.6e-35 154.8 419 35.8
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 2.8e-35 154.1 429 33.8
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 3.6e-35 153.7 388 34.8
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 8.1e-35 152.5 329 37.7
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 1.4e-34 151.8 451 32.2
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 6.8e-34 149.4 415 34.0
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 1.5e-33 148.3 404 33.9
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 1.5e-33 148.3 434 34.6
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 1.5e-33 148.3 351 34.8
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 2.6e-33 147.5 293 40.3
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 7.6e-33 146.0 381 35.2
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 7.6e-33 146.0 381 35.2
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 9.9e-33 145.6 403 34.0
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 6.4e-32 142.9 419 33.7
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 6.4e-32 142.9 432 34.0
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 1.6e-30 138.3 361 35.2
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 6.0e-30 136.3 343 35.6
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 6.0e-30 136.3 478 34.5
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 1.7e-29 134.8 404 36.4
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 2.3e-29 134.4 411 33.3
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 3.9e-29 133.7 428 33.9
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 6.6e-29 132.9 496 30.6
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 6.6e-29 132.9 434 31.6
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 2.5e-28 131.0 444 32.0
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 3.3e-28 130.6 460 33.3
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 3.3e-28 130.6 405 33.6
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 4.3e-28 130.2 314 37.6
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 4.3e-28 130.2 372 33.1
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 7.3e-28 129.4 404 35.1
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 7.3e-28 129.4 487 30.4
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 3.6e-27 127.1 371 32.9
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.1e-26 125.6 319 33.2
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 4.0e-26 123.6 293 35.5
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 6.9e-26 122.9 405 31.4
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 2.2e-24 117.9 266 35.0
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 3.8e-24 117.1 365 34.2
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 1.9e-23 114.8 376 31.1
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 1.9e-23 114.8 358 32.4
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 9.3e-23 112.5 222 38.7
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 9.3e-23 112.5 375 32.5
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 4.6e-22 110.2 305 35.4
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 4.6e-22 110.2 334 32.6
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 4.6e-22 110.2 218 39.0
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 6.0e-22 109.8 419 29.6
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 7.8e-22 109.4 369 29.8
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 1.7e-21 108.2 299 34.4
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 3.9e-21 107.1 386 30.3
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 3.9e-21 107.1 386 30.3
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.5e-20 105.1 379 31.4
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.5e-20 105.1 355 32.4
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 1.9e-20 104.8 319 32.9
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 3.3e-20 104.0 102 55.9
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 5.6e-20 103.2 353 31.4
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 1.3e-19 102.1 384 32.0
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 4.8e-19 100.1 356 32.3
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 4.8e-19 100.1 356 32.3
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 4.8e-19 100.1 102 55.9
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 1.4e-18 98.6 379 29.3
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 5.3e-18 96.7 166 38.6
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 9.0e-18 95.9 350 33.4
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 7.6e-17 92.8 387 28.4
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 7.6e-17 92.8 387 28.4
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 6.4e-16 89.7 132 48.5
Ca_06819_v3 Cicer arietinum L. HOM05D005710 ORTHO05D004657 5.4e-15 86.7 263 31.2
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 7.1e-15 86.3 337 29.1
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 6.0e-14 83.2 404 28.2
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 6.0e-14 83.2 404 28.2
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 6.0e-14 83.2 274 31.0
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 2.3e-13 81.3 90 48.9
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 3.0e-13 80.9 449 27.2
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 2.5e-12 77.8 314 31.5
GSVIVG01011503001 Vitis vinifera HOM05D005710 ORTHO05D004657 5.3e-10 70.1 79 45.6
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.4e-07 62.0 112 35.7
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 1.4e-07 62.0 155 29.7
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 4.2e-07 60.5 119 31.9
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 4.2e-07 60.5 127 32.3
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 4.2e-07 60.5 112 34.8
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.2e-07 60.5 112 34.8
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.2e-07 60.5 112 34.8
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.2e-07 60.5 112 34.8
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 4.2e-07 60.5 112 34.8
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 5.5e-07 60.1 112 34.8
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.5e-07 60.1 112 33.9
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.2e-06 58.9 101 37.6
Oeu000861.1 Olea europaea HOM05D005710 ORTHO05D004657 1.2e-06 58.9 62 48.4
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 1.6e-06 58.5 113 32.7
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 1.6e-06 58.5 112 37.5
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.6e-06 58.5 134 31.3
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 2.1e-06 58.2 99 37.4
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 2.1e-06 58.2 99 36.4
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 2.1e-06 58.2 119 31.9
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 2.1e-06 58.2 99 37.4
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 2.1e-06 58.2 113 33.6
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 2.1e-06 58.2 110 33.6
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 2.1e-06 58.2 105 32.4
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 2.1e-06 58.2 99 37.4
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 2.7e-06 57.8 110 31.8
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 3.5e-06 57.4 99 37.4
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 3.5e-06 57.4 99 37.4
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 3.5e-06 57.4 99 37.4
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 3.5e-06 57.4 99 33.3
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 3.5e-06 57.4 110 36.4
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 3.5e-06 57.4 110 32.7
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 4.6e-06 57.0 99 36.4
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 4.6e-06 57.0 99 36.4
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 4.6e-06 57.0 99 36.4
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 4.6e-06 57.0 99 36.4
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 4.6e-06 57.0 99 36.4
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 4.6e-06 57.0 112 33.9
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 4.6e-06 57.0 113 31.0
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 4.6e-06 57.0 110 35.5
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 4.6e-06 57.0 110 35.5
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 4.6e-06 57.0 113 35.4
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 4.6e-06 57.0 110 33.6
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 4.6e-06 57.0 137 30.7
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 4.6e-06 57.0 115 33.9
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 4.6e-06 57.0 127 29.9
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 4.6e-06 57.0 127 29.9
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 6.0e-06 56.6 113 35.4
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 6.0e-06 56.6 111 32.4
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 6.0e-06 56.6 119 31.1
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 7.9e-06 56.2 110 32.7
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 7.9e-06 56.2 113 35.4
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 7.9e-06 56.2 101 37.6
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 7.9e-06 56.2 116 30.2
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 7.9e-06 56.2 99 34.3
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 7.9e-06 56.2 110 36.4
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 7.9e-06 56.2 112 32.1


User provided reference genes

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