Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 9.7e-192 673.3 340 100.0
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.6e-138 496.5 340 72.6
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.4e-118 430.3 304 71.7
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.2e-117 427.2 304 71.7
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 2.7e-101 372.9 344 58.4
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 6.9e-89 331.6 349 53.0
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 4.9e-87 325.5 345 51.9
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 2.1e-85 320.1 345 51.9
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.9e-84 315.8 344 49.1
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.9e-83 313.5 344 51.7
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 7.4e-83 311.6 344 50.0
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.6e-82 310.5 344 50.6
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 2.8e-82 309.7 345 49.3
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 8.2e-82 308.1 355 50.4
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.1e-81 307.8 345 49.6
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 9.0e-81 304.7 346 48.6
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 9.0e-81 304.7 345 48.7
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.2e-80 304.3 345 49.3
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.6e-80 303.1 351 49.0
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.6e-80 303.1 351 49.0
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 4.5e-80 302.4 346 49.7
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 4.5e-80 302.4 345 48.4
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.8e-80 302.0 340 50.3
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 5.8e-80 302.0 345 50.1
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 7.6e-80 301.6 345 50.7
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.8e-79 299.3 347 49.0
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.0e-79 298.9 347 51.0
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 6.5e-79 298.5 345 47.5
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.5e-79 298.5 351 48.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.4e-78 297.4 340 50.0
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 2.5e-78 296.6 346 49.4
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 3.2e-78 296.2 355 47.6
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 5.5e-78 295.4 345 48.7
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.2e-77 294.3 344 48.5
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.7e-77 293.1 351 48.1
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 3.0e-76 289.7 349 46.7
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.0e-76 289.7 343 47.8
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.9e-76 289.3 345 48.7
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.3e-75 286.2 347 48.1
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 3.3e-75 286.2 283 55.5
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.3e-75 286.2 345 47.8
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 5.7e-75 285.4 348 47.4
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.1e-73 281.2 346 48.3
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 2.4e-73 280.0 344 48.8
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.1e-73 279.6 344 45.3
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.1e-73 279.6 344 45.3
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 6.9e-73 278.5 345 45.5
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.2e-72 277.7 306 52.0
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.5e-72 277.3 321 48.0
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.0e-72 276.9 345 45.8
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.6e-72 276.6 344 44.8
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 3.4e-72 276.2 344 48.5
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.0e-71 274.6 346 46.2
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.7e-71 273.9 344 48.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.9e-71 273.1 345 46.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 3.8e-71 272.7 320 48.4
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 5.0e-71 272.3 337 45.4
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.0e-71 272.3 341 45.2
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.1e-70 271.2 346 45.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.9e-70 270.4 327 47.4
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.9e-70 270.4 323 46.1
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 3.2e-70 269.6 336 47.3
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 3.2e-70 269.6 345 44.6
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.6e-69 267.3 345 44.6
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 2.1e-69 266.9 355 45.1
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.1e-69 266.9 344 47.7
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.7e-69 266.5 355 45.6
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.6e-69 266.2 345 42.6
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.6e-69 265.8 336 42.6
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 4.6e-69 265.8 344 43.0
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.8e-68 263.8 345 42.9
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 1.5e-67 260.8 344 45.1
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.5e-67 260.0 347 45.0
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 4.3e-67 259.2 345 44.1
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 4.3e-67 259.2 350 44.6
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 7.4e-67 258.5 345 43.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 7.4e-67 258.5 339 42.8
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 9.7e-67 258.1 347 40.6
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 9.7e-67 258.1 344 43.3
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 9.7e-67 258.1 331 46.5
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.2e-66 256.9 351 42.7
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.8e-66 255.8 345 41.7
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 6.3e-66 255.4 327 44.3
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.4e-65 253.4 350 41.7
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.4e-65 253.4 335 46.3
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 3.1e-65 253.1 352 45.7
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 5.3e-65 252.3 341 42.2
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 5.3e-65 252.3 347 41.5
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 6.9e-65 251.9 344 43.3
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.2e-64 251.1 347 45.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.6e-64 250.0 344 42.7
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 7.7e-64 248.4 347 40.1
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.3e-63 247.7 353 40.5
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.2e-63 246.9 345 42.3
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 2.2e-63 246.9 345 42.3
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.9e-63 246.5 339 41.3
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.8e-63 246.1 348 41.7
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 2.5e-62 243.4 347 39.2
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 7.2e-62 241.9 350 43.1
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 1.2e-61 241.1 342 45.0
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.6e-61 240.7 297 45.1
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.1e-61 240.4 347 40.9
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 6.1e-61 238.8 351 41.0
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 6.1e-61 238.8 340 44.1
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 1.0e-60 238.0 286 45.5
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.4e-60 237.7 320 44.7
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.3e-60 236.9 350 42.9
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.9e-60 236.1 302 45.0
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 3.9e-60 236.1 345 39.4
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.1e-59 234.6 344 41.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.5e-59 234.2 280 47.9
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.0e-59 233.8 347 39.5
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.3e-59 233.0 343 40.8
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 4.4e-59 232.6 351 41.0
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.4e-59 232.6 326 39.0
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.7e-59 232.3 320 44.7
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.3e-58 231.1 331 40.2
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.3e-58 231.1 344 41.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.7e-58 230.7 318 44.3
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.7e-58 230.7 341 42.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 4.8e-58 229.2 340 41.5
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 6.3e-58 228.8 260 51.5
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 6.3e-58 228.8 344 42.4
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 8.2e-58 228.4 347 39.2
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 1.4e-57 227.6 344 39.2
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 3.1e-57 226.5 344 39.5
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 7.7e-56 221.9 278 45.7
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-55 221.1 353 39.9
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 6.5e-55 218.8 282 41.1
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.1e-54 218.0 292 44.5
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.6e-51 206.8 335 40.0
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.8e-50 202.6 346 36.7
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.7e-47 194.1 198 52.5
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.5e-47 191.8 137 65.7
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 5.2e-44 182.6 281 38.1
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.2e-43 181.4 331 36.9
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.7e-42 176.4 129 63.6
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.7e-42 176.4 137 61.3
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 8.3e-42 175.3 309 36.9
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.1e-41 173.3 237 42.2
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.2e-40 171.4 210 43.3
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 6.8e-36 155.6 292 36.3
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 5.4e-33 146.0 328 33.8
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 9.5e-30 135.2 349 31.5
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 5.0e-23 112.8 103 53.4
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 3.7e-10 70.1 123 34.1
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 4.9e-10 69.7 207 28.5
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 7.8e-08 62.4 207 26.6


User provided reference genes

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