Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 1.0e-70 270.0 140 100.0
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 3.8e-41 171.8 140 67.9
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.2e-39 166.8 140 67.9
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 4.8e-28 128.3 142 54.9
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 4.9e-25 118.2 141 54.6
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 1.9e-24 116.3 133 54.9
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 7.1e-24 114.4 134 52.2
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 1.0e-22 110.5 98 61.2
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 1.8e-22 109.8 99 61.6
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 1.8e-22 109.8 99 61.6
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 2.3e-22 109.4 97 60.8
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 3.0e-22 109.0 103 60.2
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 1.1e-21 107.1 138 50.0
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 1.5e-21 106.7 140 51.4
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 1.9e-21 106.3 98 59.2
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 2.5e-21 105.9 132 50.0
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 4.3e-21 105.1 94 59.6
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 4.3e-21 105.1 94 59.6
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 4.3e-21 105.1 136 48.5
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 2.1e-20 102.8 106 51.9
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 3.7e-20 102.1 95 57.9
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 1.4e-19 100.1 119 49.6
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 1.8e-19 99.8 106 53.8
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 2.4e-19 99.4 134 47.0
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 4.0e-19 98.6 94 59.6
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 6.9e-19 97.8 111 55.0
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 6.9e-19 97.8 131 51.1
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 9.0e-19 97.4 130 50.8
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 9.0e-19 97.4 91 59.3
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.2e-18 97.1 91 60.4
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 1.2e-18 97.1 95 58.9
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 1.2e-18 97.1 104 57.7
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 2.0e-18 96.3 150 46.0
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 2.0e-18 96.3 87 62.1
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.0e-18 96.3 100 62.0
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 2.6e-18 95.9 91 58.2
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 2.6e-18 95.9 133 48.1
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 2.6e-18 95.9 106 50.0
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 3.4e-18 95.5 139 45.3
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 4.5e-18 95.1 150 43.3
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 5.8e-18 94.7 108 55.6
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 7.6e-18 94.4 95 53.7
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 7.6e-18 94.4 92 59.8
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 1.0e-17 94.0 113 55.8
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 4.9e-17 91.7 99 51.5
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 4.9e-17 91.7 103 55.3
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-17 91.7 96 52.1
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 4.9e-17 91.7 191 39.8
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 8.4e-17 90.9 115 46.1
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 8.4e-17 90.9 107 51.4
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 1.9e-16 89.7 135 44.4
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 3.2e-16 89.0 95 51.6
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.2e-16 88.6 95 53.7
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 5.5e-16 88.2 143 42.7
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 5.5e-16 88.2 114 48.2
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 7.1e-16 87.8 115 42.6
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 7.1e-16 87.8 106 50.0
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 9.3e-16 87.4 115 44.3
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 1.2e-15 87.0 90 54.4
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 2.1e-15 86.3 98 52.0
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 2.1e-15 86.3 152 42.1
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 2.7e-15 85.9 97 52.6
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 2.7e-15 85.9 137 40.1
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 3.5e-15 85.5 95 51.6
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 1.8e-14 83.2 137 39.4
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 2.3e-14 82.8 146 45.2
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 3.0e-14 82.4 95 50.5
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 3.0e-14 82.4 95 50.5
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 3.9e-14 82.0 93 50.5
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 3.9e-14 82.0 93 50.5
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 3.9e-14 82.0 95 49.5
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 5.1e-14 81.6 139 42.4
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 8.7e-14 80.9 133 39.1
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 8.7e-14 80.9 93 49.5
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 1.5e-13 80.1 94 50.0
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 2.5e-13 79.3 120 42.5
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 2.5e-13 79.3 93 48.4
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 2.5e-13 79.3 93 48.4
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 2.5e-13 79.3 103 47.6
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 4.3e-13 78.6 92 50.0
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 4.3e-13 78.6 137 38.7
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.3e-12 77.0 98 46.9
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 1.6e-12 76.6 95 47.4
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.6e-12 76.6 95 47.4
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.6e-12 76.6 95 47.4
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 2.1e-12 76.3 137 38.0
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 2.8e-12 75.9 95 46.3
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 2.8e-12 75.9 95 47.4
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 2.8e-12 75.9 95 47.4
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 5.3e-11 71.6 100 43.0
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 9.0e-11 70.9 149 40.3
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 1.5e-10 70.1 119 38.7
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 4.5e-10 68.6 108 41.7
EL10Ac2g02880 Beta vulgaris HOM05D007435 ORTHO05D009338 5.9e-10 68.2 42 81.0
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 5.9e-10 68.2 127 40.2
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 7.6e-10 67.8 124 41.1
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 1.3e-09 67.0 94 43.6
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 2.2e-09 66.2 109 43.1
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 2.5e-08 62.8 55 58.2
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 4.2e-08 62.0 73 50.7
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 1.6e-07 60.1 53 60.4
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 2.7e-07 59.3 137 38.7
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 4.6e-07 58.5 66 45.5
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 1.8e-06 56.6 120 35.8


User provided reference genes

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