Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 4.1e-264 914.4 561 100.0
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.2e-172 609.8 581 69.2
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.8e-166 590.1 591 68.5
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 4.0e-166 589.0 581 69.2
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 7.3e-144 515.0 567 62.1
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.4e-131 473.4 565 52.0
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 3.0e-121 439.9 568 48.9
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 8.1e-119 431.8 565 48.3
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.1e-118 431.4 559 49.6
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 4.0e-118 429.5 565 48.0
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 2.6e-117 426.8 564 46.8
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 8.6e-113 411.8 568 46.7
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 8.6e-113 411.8 327 64.2
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.6e-111 407.5 329 64.1
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.6e-111 407.5 327 63.3
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.8e-111 406.8 305 65.6
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 3.6e-111 406.4 327 63.6
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 8.1e-111 405.2 338 64.8
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 3.1e-110 403.3 327 62.7
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 5.2e-110 402.5 559 44.9
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.6e-109 400.2 329 63.2
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.6e-109 400.2 503 47.3
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 3.4e-109 399.8 328 63.7
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 3.4e-109 399.8 571 45.7
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 3.8e-108 396.4 299 65.2
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 1.9e-107 394.0 577 46.3
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 1.9e-107 394.0 567 46.2
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 2.4e-107 393.7 320 64.7
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 5.4e-107 392.5 316 63.6
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 9.3e-107 391.7 324 63.6
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 1.6e-106 391.0 291 68.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.7e-106 390.2 323 64.4
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 7.8e-106 388.7 535 46.0
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.0e-105 388.3 336 61.0
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 1.3e-105 387.9 321 61.7
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 2.3e-105 387.1 565 45.1
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 5.1e-105 386.0 333 61.0
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 6.6e-105 385.6 313 63.6
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 8.7e-105 385.2 304 65.1
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 8.7e-105 385.2 322 62.1
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 4.3e-104 382.9 317 65.9
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 5.6e-104 382.5 318 62.9
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 7.3e-104 382.1 331 59.5
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 2.1e-103 380.6 309 62.5
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 2.8e-103 380.2 566 43.6
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 6.2e-103 379.0 562 43.1
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 6.2e-103 379.0 540 44.3
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 8.1e-103 378.6 567 43.2
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.1e-102 378.3 291 66.3
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.8e-102 377.5 358 57.5
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 4.0e-102 376.3 299 64.5
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 5.3e-102 375.9 525 45.7
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 6.9e-102 375.6 327 59.6
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 9.0e-102 375.2 299 64.9
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.2e-101 374.8 294 65.3
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 1.5e-101 374.4 327 60.6
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.0e-101 374.0 313 62.9
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 2.0e-101 374.0 308 62.7
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 2.6e-101 373.6 566 44.0
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 4.5e-101 372.9 589 42.8
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 7.6e-101 372.1 553 44.1
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 1.3e-100 371.3 541 44.9
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 3.8e-100 369.8 323 59.4
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 6.4e-100 369.0 528 46.4
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 8.4e-100 368.6 299 64.2
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 1.9e-99 367.5 301 61.1
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.9e-99 367.5 302 61.9
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.4e-99 367.1 592 42.1
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.2e-98 364.8 322 60.2
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.3e-96 356.3 322 56.2
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 4.3e-96 356.3 322 56.8
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.3e-95 354.8 324 58.3
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.8e-95 353.6 300 59.0
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.4e-94 351.3 568 43.7
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.8e-94 350.9 329 55.0
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.8e-94 350.9 504 43.7
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 2.4e-94 350.5 302 59.9
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 9.0e-94 348.6 300 58.7
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 2.0e-93 347.4 618 38.5
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 2.6e-93 347.1 496 45.4
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 4.5e-93 346.3 301 58.5
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 8.4e-92 342.0 319 55.5
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 8.4e-92 342.0 249 70.7
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.6e-90 337.8 320 55.6
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 6.0e-90 335.9 286 60.1
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 5.1e-89 332.8 332 52.7
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 9.6e-88 328.6 300 56.7
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.4e-86 324.7 344 51.7
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.0e-85 320.9 318 55.7
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 3.8e-84 316.6 565 39.3
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 4.6e-82 309.7 259 61.0
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.3e-81 308.1 293 55.3
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 1.8e-81 307.8 442 44.8
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.1e-80 305.1 313 53.0
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 9.0e-78 295.4 280 57.1
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 6.3e-71 272.7 328 47.0
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.9e-67 261.2 284 52.1
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 1.3e-63 248.4 290 50.0
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 9.1e-62 242.3 436 38.5
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 2.2e-60 237.7 297 43.4
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 3.8e-60 236.9 447 36.7
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 1.4e-57 228.4 306 44.8
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.5e-56 224.9 331 41.1
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 4.2e-51 206.8 171 62.6
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 5.5e-51 206.5 203 53.7
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.5e-48 198.4 287 43.6
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 6.3e-47 193.0 208 51.9
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 1.1e-46 192.2 170 58.2
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 6.1e-42 176.4 219 45.2
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 5.9e-37 159.8 102 74.5
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 7.7e-37 159.5 130 58.5
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 6.5e-36 156.4 211 38.9
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 1.3e-31 142.1 115 60.0
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.8e-30 138.3 143 56.6
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.3e-28 131.3 117 59.8
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.8e-28 130.6 208 40.9
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 6.1e-26 123.2 284 31.7
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 1.0e-25 122.5 124 53.2
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 9.8e-24 115.9 89 60.7
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.5e-21 107.5 124 54.8
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.5e-21 107.5 124 54.8
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 4.3e-19 100.5 62 75.8
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 4.9e-15 87.0 73 54.8
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.3e-12 79.0 52 69.2
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 6.6e-12 76.6 115 33.9
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 4.3e-11 73.9 46 73.9
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 9.5e-11 72.8 50 64.0
Sc03g0006740 Simmondsia chinensis HOM05D005646 ORTHO05D006828 6.2e-10 70.1 86 50.0
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 2.3e-09 68.2 71 54.9
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.6e-08 64.7 54 55.6
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 2.2e-07 61.6 44 75.0


User provided reference genes

Program Settings