Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.4e-278 962.2 465 100.0
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.5e-179 633.3 333 90.4
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.1e-172 609.0 333 87.7
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.7e-170 603.2 336 86.6
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.2e-163 580.5 331 82.8
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 2.6e-163 579.3 333 83.5
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 3.5e-160 568.9 334 81.7
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 3.0e-159 565.8 333 81.7
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 6.6e-159 564.7 310 84.8
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 8.6e-159 564.3 310 85.2
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.5e-158 562.8 302 87.4
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 4.3e-158 562.0 333 80.2
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 9.6e-158 560.8 333 79.9
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.2e-157 560.5 334 80.2
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 6.2e-157 558.1 319 83.7
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.1e-156 555.8 329 81.2
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 5.2e-156 555.1 356 76.7
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 6.8e-156 554.7 312 84.6
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 8.9e-156 554.3 318 82.4
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 8.9e-156 554.3 318 81.8
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.2e-155 553.9 315 82.5
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.6e-155 552.7 343 78.4
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.6e-155 552.7 313 83.1
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 9.9e-155 550.8 316 81.0
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.3e-154 550.4 316 82.3
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 6.4e-154 548.1 316 82.3
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 6.4e-154 548.1 317 82.0
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 6.4e-154 548.1 333 78.4
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 8.4e-154 547.7 331 78.2
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 8.4e-154 547.7 318 81.1
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.4e-153 547.0 334 79.0
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.4e-153 547.0 338 78.1
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 2.4e-153 546.2 312 82.7
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 2.4e-153 546.2 337 78.3
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 2.4e-153 546.2 337 78.0
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 4.2e-153 545.4 332 78.6
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 5.4e-153 545.0 319 79.9
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 7.1e-153 544.7 333 78.1
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.2e-152 543.9 315 81.6
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.6e-152 543.5 311 82.3
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.6e-152 543.5 333 78.4
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.6e-152 543.5 312 80.8
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 2.1e-152 543.1 334 77.5
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.1e-152 543.1 334 78.7
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 2.7e-152 542.7 334 77.5
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 2.7e-152 542.7 309 81.9
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 2.7e-152 542.7 314 78.7
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.5e-152 542.3 335 78.2
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.5e-152 542.3 315 83.5
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 4.6e-152 542.0 311 82.0
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 6.0e-152 541.6 333 78.4
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 7.8e-152 541.2 315 80.6
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.3e-151 540.4 312 81.7
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 1.7e-151 540.0 334 76.3
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 3.9e-151 538.9 310 82.3
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 3.9e-151 538.9 317 80.4
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 5.1e-151 538.5 305 84.3
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 5.1e-151 538.5 309 82.2
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 6.6e-151 538.1 334 76.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 6.6e-151 538.1 314 78.3
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 8.7e-151 537.7 333 77.8
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.9e-150 536.6 335 77.3
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.5e-150 536.2 301 84.4
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.3e-150 535.4 297 87.2
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 9.6e-150 534.3 309 80.6
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 9.6e-150 534.3 309 81.2
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 1.3e-149 533.9 324 79.6
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.1e-149 533.1 323 79.9
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 2.1e-149 533.1 296 82.8
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-149 532.7 323 79.9
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.8e-149 532.7 323 79.9
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 3.6e-149 532.3 349 73.6
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 4.8e-149 531.9 318 79.6
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 8.1e-149 531.2 338 76.9
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 8.1e-149 531.2 335 77.6
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.1e-148 530.8 320 77.8
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.1e-148 530.8 320 77.5
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.8e-148 530.0 320 79.4
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 2.4e-148 529.6 326 78.5
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 4.0e-148 528.9 325 79.4
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 4.0e-148 528.9 299 80.9
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.2e-147 527.3 318 79.6
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.5e-147 526.9 314 76.4
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.5e-147 526.9 336 74.4
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 2.0e-147 526.6 301 81.1
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 3.8e-146 522.3 314 75.8
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 4.9e-146 521.9 317 75.4
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 6.4e-146 521.5 316 77.8
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.1e-145 520.8 300 82.3
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.4e-145 520.4 315 78.1
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.9e-145 520.0 315 75.6
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 3.2e-145 519.2 316 75.0
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.2e-145 519.2 306 80.4
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 9.3e-145 517.7 320 75.0
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.2e-144 517.3 325 74.2
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 3.5e-144 515.8 334 75.7
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 3.5e-144 515.8 294 81.6
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 6.0e-144 515.0 315 78.1
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.6e-143 511.5 337 74.5
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.1e-142 510.8 305 76.7
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 5.3e-140 501.9 328 73.2
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 5.3e-140 501.9 311 76.2
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 6.9e-140 501.5 304 75.7
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 9.0e-140 501.1 295 78.3
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.6e-136 490.3 275 84.4
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 2.1e-136 490.0 316 74.7
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.5e-136 489.2 428 59.1
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 8.7e-135 484.6 333 72.1
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.5e-131 473.8 340 69.7
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 7.1e-129 464.9 276 81.2
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-127 458.8 297 76.4
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.4e-124 450.7 313 67.4
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 6.9e-124 448.4 284 75.4
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.6e-123 446.4 297 71.4
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.4e-123 446.0 244 86.9
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 4.1e-116 422.5 314 66.2
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.5e-115 420.6 305 70.8
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-111 407.5 277 74.7
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 9.7e-110 401.4 285 66.7
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 2.2e-106 390.2 233 78.1
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.1e-105 387.9 285 65.6
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 2.6e-102 376.7 285 62.5
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 8.0e-96 355.1 294 58.2
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.4e-95 354.4 227 76.2
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 3.0e-95 353.2 240 68.8
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 5.2e-95 352.4 221 75.6
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.9e-89 334.0 277 65.7
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.3e-85 321.2 290 56.9
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.9e-82 310.1 168 85.7
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 7.0e-76 288.9 153 86.3
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.4e-69 265.8 297 52.5
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.6e-64 251.1 227 56.4
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 2.9e-61 240.4 127 85.8
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 5.0e-58 229.6 131 78.6
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 4.1e-52 209.9 160 67.5
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 3.4e-46 190.3 146 65.8
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 5.4e-44 183.0 100 82.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-43 181.4 146 64.4
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.5e-41 174.9 107 72.9
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 5.8e-38 162.9 108 66.7
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 9.9e-38 162.2 146 57.5
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.7e-29 134.8 72 87.5
Ah.02g111940 Amaranthus hybridus HOM05D012836 ORTHO05D015817 7.4e-25 119.4 77 75.3
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 1.4e-23 115.2 58 87.9
Ah.11g040230 Amaranthus hybridus HOM05D012836 ORTHO05D015817 1.8e-23 114.8 57 89.5
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 5.3e-23 113.2 55 90.9
Ah.06g186580 Amaranthus hybridus HOM05D012836 ORTHO05D015817 6.9e-23 112.8 55 89.1
Ah.05g178360 Amaranthus hybridus HOM05D012836 ORTHO05D015817 1.5e-22 111.7 56 89.3
Ah.12g059420 Amaranthus hybridus HOM05D001153 ORTHO05D000949 2.2e-21 107.8 66 77.3
Ah.06g188420 Amaranthus hybridus HOM05D012836 ORTHO05D015817 8.4e-21 105.9 53 88.7
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.1e-20 105.5 53 88.7
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.1e-20 105.5 64 78.1
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 4.2e-20 103.6 57 82.5
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 7.1e-20 102.8 63 71.4
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 3.0e-18 97.4 67 67.2
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 3.0e-18 97.4 67 67.2
Ah.13g066200 Amaranthus hybridus HOM05D012836 ORTHO05D006332 2.8e-16 90.9 66 66.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 4.0e-15 87.0 44 86.4
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 9.0e-15 85.9 44 86.4
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 2.0e-14 84.7 43 88.4
Ah.13g077250 Amaranthus hybridus HOM05D012836 ORTHO05D015817 1.0e-13 82.4 42 83.3
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.4e-12 78.6 41 82.9
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.2e-11 75.5 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 8.7e-10 69.3 40 85.0
Ah.14g081000 Amaranthus hybridus HOM05D005531 ORTHO05D006332 3.1e-07 60.8 28 85.7
Ah.07g197290 Amaranthus hybridus HOM05D012836 ORTHO05D015817 5.3e-07 60.1 26 92.3
Ah.10g032970 Amaranthus hybridus HOM05D012836 ORTHO05D006332 5.3e-07 60.1 26 92.3
Ah.11g039390 Amaranthus hybridus HOM05D000129 ORTHO05D000997 5.3e-07 60.1 29 93.1
Ah.02g119680 Amaranthus hybridus HOM05D014553 ORTHO05D018255 6.9e-07 59.7 28 82.1
Ah.15g092900 Amaranthus hybridus HOM05D012836 ORTHO05D015817 9.0e-07 59.3 27 88.9
Ah.02g127550 Amaranthus hybridus HOM05D012836 ORTHO05D015817 1.2e-06 58.9 27 85.2
Ah.07g205670 Amaranthus hybridus HOM05D000036 ORTHO05D000095 3.4e-06 57.4 46 58.7
Ah.15g099580 Amaranthus hybridus HOM05D012836 ORTHO05D015817 7.6e-06 56.2 28 78.6
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 1.0e-05 55.8 116 28.4


User provided reference genes

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