Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.9e-37 158.7 82 100.0
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 1.4e-27 125.9 78 79.5
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 4.0e-27 124.4 78 76.9
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 9.0e-27 123.2 78 78.2
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 1.2e-26 122.9 78 80.8
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 2.6e-26 121.7 78 78.2
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.4e-26 121.3 78 78.2
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.4e-26 121.3 78 75.6
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 3.4e-26 121.3 82 70.7
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 4.5e-26 120.9 78 74.4
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 5.8e-26 120.6 78 74.4
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 7.6e-26 120.2 78 74.4
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 7.6e-26 120.2 78 74.4
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 9.9e-26 119.8 78 73.1
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 9.9e-26 119.8 78 75.6
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.3e-25 119.4 78 73.1
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.3e-25 119.4 78 73.1
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.7e-25 119.0 78 73.1
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 1.7e-25 119.0 78 75.6
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 1.7e-25 119.0 78 75.6
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.2e-25 118.6 78 78.2
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 2.9e-25 118.2 78 74.4
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 2.9e-25 118.2 78 73.1
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 3.8e-25 117.9 78 71.8
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 3.8e-25 117.9 78 71.8
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 4.9e-25 117.5 78 74.4
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 4.9e-25 117.5 78 73.1
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 6.4e-25 117.1 78 70.5
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 8.4e-25 116.7 79 73.4
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 8.4e-25 116.7 82 65.9
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.1e-24 116.3 77 75.3
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.1e-24 116.3 78 75.6
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 1.1e-24 116.3 78 73.1
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.4e-24 115.9 78 74.4
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 2.4e-24 115.2 78 70.5
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 2.4e-24 115.2 78 71.8
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.2e-24 114.8 78 67.9
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 3.2e-24 114.8 78 69.2
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.2e-24 114.4 78 70.5
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 5.4e-24 114.0 78 71.8
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 5.4e-24 114.0 82 64.6
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 5.4e-24 114.0 78 73.1
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 5.4e-24 114.0 78 74.4
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 7.1e-24 113.6 78 69.2
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 9.3e-24 113.2 78 70.5
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.2e-23 112.8 78 70.5
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.2e-23 112.8 78 73.1
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 1.2e-23 112.8 78 70.5
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 1.6e-23 112.5 78 75.6
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.6e-23 112.5 79 74.7
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.6e-23 112.5 78 74.4
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.1e-23 112.1 78 69.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.1e-23 112.1 77 68.8
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 2.1e-23 112.1 78 74.4
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 2.1e-23 112.1 78 70.5
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 2.7e-23 111.7 78 74.4
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.5e-23 111.3 78 73.1
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 6.0e-23 110.5 74 70.3
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 6.0e-23 110.5 78 71.8
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 7.9e-23 110.2 78 70.5
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.0e-22 109.8 78 71.8
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.0e-22 109.8 78 71.8
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 1.3e-22 109.4 78 66.7
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.8e-22 109.0 79 70.9
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 2.3e-22 108.6 78 71.8
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 2.3e-22 108.6 78 71.8
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 2.3e-22 108.6 78 70.5
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 3.0e-22 108.2 78 70.5
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 3.9e-22 107.8 78 66.7
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 3.9e-22 107.8 78 66.7
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 3.9e-22 107.8 78 70.5
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 5.1e-22 107.5 78 71.8
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 5.1e-22 107.5 81 66.7
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 6.7e-22 107.1 78 70.5
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 8.7e-22 106.7 75 72.0
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.1e-21 106.3 78 67.9
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.5e-21 105.9 74 70.3
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.9e-21 105.5 78 67.9
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.9e-21 105.5 78 67.9
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.9e-21 105.5 78 65.4
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 2.5e-21 105.1 77 64.9
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 3.3e-21 104.8 73 69.9
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 3.3e-21 104.8 75 69.3
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 3.3e-21 104.8 78 67.9
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.3e-21 104.8 78 66.7
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 4.3e-21 104.4 78 67.9
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 4.3e-21 104.4 78 66.7
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 7.4e-21 103.6 78 66.7
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 7.4e-21 103.6 78 66.7
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 7.4e-21 103.6 78 66.7
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 7.4e-21 103.6 78 66.7
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 9.6e-21 103.2 83 63.9
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 9.6e-21 103.2 76 64.5
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.3e-20 102.8 78 66.7
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 1.3e-20 102.8 80 62.5
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.6e-20 102.4 81 65.4
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 2.8e-20 101.7 79 65.8
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 3.7e-20 101.3 78 64.1
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 3.7e-20 101.3 78 62.8
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 4.8e-20 100.9 79 65.8
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 4.8e-20 100.9 78 65.4
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 4.8e-20 100.9 79 67.1
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 4.8e-20 100.9 78 66.7
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 4.8e-20 100.9 79 65.8
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 6.2e-20 100.5 79 67.1
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 6.2e-20 100.5 79 65.8
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 6.2e-20 100.5 79 65.8
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 6.2e-20 100.5 79 65.8
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 6.2e-20 100.5 78 64.1
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 8.1e-20 100.1 78 64.1
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 8.1e-20 100.1 78 62.8
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.1e-19 99.8 78 62.8
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 1.4e-19 99.4 79 65.8
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.4e-19 99.4 79 65.8
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.4e-19 99.4 79 65.8
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.8e-19 99.0 79 65.8
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.8e-19 99.0 79 65.8
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 1.8e-19 99.0 79 65.8
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 1.8e-19 99.0 78 61.5
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 2.4e-19 98.6 78 61.5
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 3.1e-19 98.2 79 64.6
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 3.1e-19 98.2 79 64.6
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.1e-19 98.2 78 66.7
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 3.1e-19 98.2 78 64.1
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.0e-19 97.8 78 62.8
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.0e-19 97.8 78 62.8
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 4.0e-19 97.8 79 64.6
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 4.0e-19 97.8 78 60.3
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 5.3e-19 97.4 79 64.6
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 6.9e-19 97.1 79 63.3
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 6.9e-19 97.1 77 59.7
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 9.0e-19 96.7 78 62.8
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 1.2e-18 96.3 78 62.8
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 1.2e-18 96.3 77 62.3
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 1.2e-18 96.3 78 60.3
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 1.5e-18 95.9 78 61.5
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 1.5e-18 95.9 78 61.5
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 2.0e-18 95.5 78 59.0
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.0e-18 95.5 75 64.0
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.0e-18 95.5 82 59.8
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 3.4e-18 94.7 79 60.8
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 4.5e-18 94.4 79 62.0
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 5.8e-18 94.0 78 60.3
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 5.8e-18 94.0 78 60.3
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 7.6e-18 93.6 78 59.0
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.0e-17 93.2 78 65.4
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.0e-17 93.2 78 64.1
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 1.7e-17 92.4 76 60.5
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 2.9e-17 91.7 63 71.4
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 3.8e-17 91.3 79 58.2
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.8e-17 91.3 76 61.8
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 1.1e-16 89.7 78 55.1
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 4.2e-16 87.8 79 55.7
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.2e-15 86.3 79 55.7
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 2.7e-15 85.1 78 56.4
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.0e-14 83.2 56 73.2
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.3e-14 82.8 79 54.4
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.8e-14 82.4 52 76.9
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.8e-14 82.4 78 52.6
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 2.3e-14 82.0 78 57.7
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 3.9e-14 81.3 70 62.9
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 3.9e-14 81.3 58 70.7
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 5.1e-14 80.9 72 51.4
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 1.5e-13 79.3 62 62.9
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.5e-13 79.3 78 52.6
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 1.3e-12 76.3 76 47.4
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 2.4e-11 72.0 51 66.7
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 5.3e-11 70.9 73 56.2
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 2.2e-09 65.5 80 50.0
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 5.0e-09 64.3 41 75.6
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.9e-08 62.4 39 76.9
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 2.5e-08 62.0 52 53.8
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 3.2e-08 61.6 35 82.9
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 6.1e-07 57.4 78 42.3
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 1.3e-06 56.2 80 42.5
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.8e-06 55.8 35 74.3


User provided reference genes

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