Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.5e-195 686.0 353 100.0
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.3e-90 337.4 372 53.0
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 4.6e-88 328.9 386 50.8
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 9.4e-65 251.5 407 40.8
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.2e-53 213.8 324 42.6
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 6.1e-40 169.1 411 34.8
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 7.5e-22 109.0 333 31.8
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 6.4e-21 105.9 333 29.7
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 3.2e-20 103.6 341 30.2
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 3.5e-19 100.1 334 28.4
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.5e-19 100.1 339 28.0
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 4.6e-19 99.8 338 28.1
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 4.6e-19 99.8 337 28.5
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 6.0e-19 99.4 355 28.7
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 7.8e-19 99.0 342 29.5
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.0e-18 98.6 335 28.4
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.3e-18 98.2 336 28.3
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.9e-18 96.7 330 30.6
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 8.6e-18 95.5 337 29.1
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 1.1e-17 95.1 377 27.6
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 1.9e-17 94.4 298 29.9
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 3.3e-17 93.6 350 26.9
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 3.3e-17 93.6 351 26.2
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 7.3e-17 92.4 300 28.7
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 1.6e-16 91.3 322 27.3
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 2.1e-16 90.9 365 27.7
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 2.8e-16 90.5 329 28.3
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 6.2e-16 89.4 309 27.8
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 6.2e-16 89.4 309 27.8
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 6.2e-16 89.4 344 26.2
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 8.1e-16 89.0 304 29.9
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 1.1e-15 88.6 333 26.7
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 1.1e-15 88.6 319 27.0
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 1.4e-15 88.2 297 27.6
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.4e-15 88.2 229 35.4
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.4e-15 87.4 388 27.3
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 3.1e-15 87.0 330 26.7
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.2e-14 85.1 332 27.4
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 2.6e-14 84.0 329 28.9
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 3.4e-14 83.6 298 27.9
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 3.4e-14 83.6 305 27.2
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 3.4e-14 83.6 309 26.5
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 5.8e-14 82.8 336 27.1
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 7.6e-14 82.4 307 26.1
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 2.9e-13 80.5 311 27.7
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 3.8e-13 80.1 309 25.9
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 4.9e-13 79.7 295 27.5
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 4.9e-13 79.7 330 28.2
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 6.4e-13 79.3 393 27.5
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 8.4e-13 79.0 343 26.8
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 8.4e-13 79.0 328 27.1
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 1.1e-12 78.6 309 26.2
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.1e-12 78.6 359 25.1
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 1.1e-12 78.6 313 27.2
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 1.9e-12 77.8 109 41.3
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.9e-12 77.8 96 42.7
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 1.9e-12 77.8 285 27.4
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 2.4e-12 77.4 115 44.3
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 2.4e-12 77.4 115 44.3
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 5.4e-12 76.3 358 26.8
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.6e-11 74.7 300 26.7
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 2.1e-11 74.3 295 25.4
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 2.1e-11 74.3 96 44.8
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 2.7e-11 73.9 312 26.6
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 2.7e-11 73.9 325 24.6
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 3.5e-11 73.6 195 30.8
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 3.5e-11 73.6 309 26.9
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 3.5e-11 73.6 185 32.4
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 4.6e-11 73.2 318 27.0
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 7.8e-11 72.4 355 25.9
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 7.8e-11 72.4 277 28.2
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 1.3e-10 71.6 301 25.6
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.3e-10 71.6 317 26.8
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 1.3e-10 71.6 100 43.0
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.7e-10 71.2 188 33.5
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 3.0e-10 70.5 132 38.6
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 5.1e-10 69.7 297 25.3
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 6.6e-10 69.3 327 27.8
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 8.7e-10 68.9 171 31.6
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.1e-09 68.6 287 26.1
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 1.9e-09 67.8 111 39.6
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 2.5e-09 67.4 90 42.2
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.3e-09 67.0 312 26.3
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 1.6e-08 64.7 98 40.8
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 1.6e-08 64.7 236 32.6
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 2.1e-08 64.3 311 26.7
Eucgr.G03246 Eucalyptus grandis HOM05D004414 ORTHO05D001824 2.4e-07 60.8 123 33.3
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 4.0e-07 60.1 292 26.4
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 4.0e-07 60.1 121 33.9
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 5.2e-07 59.7 110 32.7
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 5.2e-07 59.7 211 27.5
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 5.2e-07 59.7 211 27.5
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 5.2e-07 59.7 104 37.5
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 5.2e-07 59.7 174 28.2
CDE12G0797 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 5.2e-07 59.7 112 32.1
Lj3g0012335 Lotus japonicus HOM05D004414 ORTHO05D001824 5.2e-07 59.7 108 35.2
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 5.2e-07 59.7 330 23.9
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.5e-06 58.2 295 26.1
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 1.5e-06 58.2 91 41.8
PSO781G0010 Papaver somniferum HOM05D003662 ORTHO05D001824 1.5e-06 58.2 95 35.8
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 1.5e-06 58.2 105 37.1
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 2.0e-06 57.8 287 24.4
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 2.0e-06 57.8 200 28.0
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 2.0e-06 57.8 200 28.0
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 2.6e-06 57.4 139 29.5
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 3.4e-06 57.0 122 29.5
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 3.4e-06 57.0 309 27.2
MSTRG.20525 Avicennia marina HOM05D004414 ORTHO05D001824 4.4e-06 56.6 138 32.6
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 4.4e-06 56.6 315 25.7
DCAR_003244 Daucus carota HOM05D001375 ORTHO05D001222 4.4e-06 56.6 93 38.7
Phvul.006G206900 Phaseolus vulgaris HOM05D003662 ORTHO05D001824 4.4e-06 56.6 97 35.1
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 4.4e-06 56.6 113 40.7
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 5.8e-06 56.2 317 25.2
Cc00_g16250 Coffea canephora HOM05D004414 ORTHO05D001824 5.8e-06 56.2 144 27.1
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 5.8e-06 56.2 213 27.2
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 7.6e-06 55.8 317 24.9
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 7.6e-06 55.8 96 39.6
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 7.6e-06 55.8 109 36.7
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 7.6e-06 55.8 109 36.7
PSO541G6545 Papaver somniferum HOM05D003662 ORTHO05D001824 7.6e-06 55.8 95 35.8
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 7.6e-06 55.8 126 34.1
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 7.6e-06 55.8 200 28.0
ECA248G3760 Erigeron canadensis HOM05D004414 ORTHO05D001824 9.9e-06 55.5 91 40.7


User provided reference genes

Program Settings