Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g029710 Amaranthus hybridus HOM05D003466 ORTHO05D004102 6.6e-90 334.0 161 100.0
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 1.1e-47 193.7 120 73.3
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 1.4e-47 193.4 120 74.2
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 1.4e-47 193.4 116 75.9
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 2.4e-47 192.6 120 74.2
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 4.0e-47 191.8 120 72.5
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 5.3e-47 191.4 116 75.9
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 6.9e-47 191.0 116 73.3
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 9.0e-47 190.7 120 73.3
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 1.2e-46 190.3 120 72.5
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.6e-46 189.1 119 73.1
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.6e-46 189.1 119 73.1
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 2.6e-46 189.1 120 73.3
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 3.4e-46 188.7 120 70.0
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 3.4e-46 188.7 120 71.7
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 4.5e-46 188.3 119 71.4
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 4.5e-46 188.3 120 71.7
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 4.5e-46 188.3 120 72.5
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 7.6e-46 187.6 121 69.4
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 7.6e-46 187.6 116 73.3
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 7.6e-46 187.6 120 70.8
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 7.6e-46 187.6 120 70.8
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 7.6e-46 187.6 120 72.5
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 7.6e-46 187.6 120 72.5
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 9.9e-46 187.2 120 70.8
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 9.9e-46 187.2 120 69.2
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 1.3e-45 186.8 120 70.8
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 1.3e-45 186.8 116 73.3
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 1.3e-45 186.8 119 71.4
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 1.7e-45 186.4 116 74.1
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 1.7e-45 186.4 116 72.4
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 2.2e-45 186.0 116 73.3
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 2.2e-45 186.0 120 70.8
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 2.2e-45 186.0 121 71.1
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 2.9e-45 185.7 119 68.9
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 2.9e-45 185.7 116 73.3
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 3.8e-45 185.3 120 69.2
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 3.8e-45 185.3 120 69.2
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 3.8e-45 185.3 120 69.2
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 3.8e-45 185.3 119 71.4
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 3.8e-45 185.3 119 71.4
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 4.9e-45 184.9 120 69.2
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 6.4e-45 184.5 119 71.4
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 6.4e-45 184.5 119 71.4
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 6.4e-45 184.5 120 70.8
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 6.4e-45 184.5 120 70.8
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 8.4e-45 184.1 120 69.2
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 8.4e-45 184.1 120 70.0
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 8.4e-45 184.1 118 70.3
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 8.4e-45 184.1 121 71.9
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 8.4e-45 184.1 120 70.0
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 1.1e-44 183.7 120 70.0
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 1.1e-44 183.7 120 70.0
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 1.1e-44 183.7 121 68.6
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 1.4e-44 183.3 119 68.9
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 1.4e-44 183.3 120 69.2
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 1.4e-44 183.3 120 69.2
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 1.4e-44 183.3 119 69.7
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 1.9e-44 183.0 119 69.7
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 1.9e-44 183.0 119 69.7
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 1.9e-44 183.0 121 68.6
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 1.9e-44 183.0 121 68.6
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 1.9e-44 183.0 121 68.6
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 1.9e-44 183.0 116 71.6
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 2.4e-44 182.6 117 70.9
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 2.4e-44 182.6 120 69.2
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 4.2e-44 181.8 120 70.0
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 4.2e-44 181.8 120 67.5
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 4.2e-44 181.8 120 67.5
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 4.2e-44 181.8 120 67.5
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 5.5e-44 181.4 117 71.8
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 5.5e-44 181.4 116 70.7
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 5.5e-44 181.4 120 70.0
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 5.5e-44 181.4 119 69.7
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 5.5e-44 181.4 119 69.7
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 5.5e-44 181.4 120 68.3
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 1.2e-43 180.3 119 68.9
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.6e-43 179.9 120 69.2
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 2.1e-43 179.5 120 66.7
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 2.1e-43 179.5 120 66.7
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 2.1e-43 179.5 120 66.7
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 2.1e-43 179.5 119 68.1
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 2.1e-43 179.5 119 69.7
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 2.1e-43 179.5 120 67.5
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.1e-43 179.5 120 68.3
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 2.7e-43 179.1 120 66.7
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 2.7e-43 179.1 120 66.7
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.7e-43 179.1 120 67.5
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.7e-43 179.1 120 67.5
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 2.7e-43 179.1 120 66.7
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 2.7e-43 179.1 119 67.2
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 3.5e-43 178.7 121 66.1
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 3.5e-43 178.7 119 68.1
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 3.5e-43 178.7 120 69.2
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 3.5e-43 178.7 119 65.5
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 4.6e-43 178.3 116 67.2
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 4.6e-43 178.3 116 67.2
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 4.6e-43 178.3 116 67.2
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 4.6e-43 178.3 116 67.2
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 4.6e-43 178.3 121 65.3
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 4.6e-43 178.3 120 67.5
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 4.6e-43 178.3 116 70.7
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 4.6e-43 178.3 116 72.4
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 4.6e-43 178.3 121 66.9
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 4.6e-43 178.3 116 70.7
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 6.0e-43 177.9 121 65.3
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 6.0e-43 177.9 116 70.7
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 7.9e-43 177.6 120 67.5
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 1.0e-42 177.2 128 67.2
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.0e-42 177.2 114 71.9
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 1.0e-42 177.2 120 66.7
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 1.0e-42 177.2 119 68.1
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 1.0e-42 177.2 114 71.9
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 1.0e-42 177.2 120 67.5
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 1.3e-42 176.8 114 71.9
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.3e-42 176.8 114 71.9
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 2.3e-42 176.0 120 67.5
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 2.3e-42 176.0 120 66.7
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 2.3e-42 176.0 120 67.5
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 2.3e-42 176.0 120 67.5
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 3.9e-42 175.3 117 70.1
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 3.9e-42 175.3 114 71.1
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 6.7e-42 174.5 120 66.7
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 6.7e-42 174.5 120 66.7
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 1.5e-41 173.3 115 67.8
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 1.6e-40 169.9 120 65.0
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 1.6e-40 169.9 112 69.6
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 2.1e-40 169.5 116 67.2
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 3.8e-37 158.7 114 64.0
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 3.8e-37 158.7 101 71.3
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 5.5e-36 154.8 162 51.2
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.1e-35 152.9 99 70.7
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 7.9e-35 151.0 112 67.0
RcHm_v2.0_Chr3g0479581 Rosa chinensis HOM05D003466 ORTHO05D004102 1.0e-34 150.6 117 62.4
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 8.2e-32 141.0 113 58.4
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 2.0e-30 136.3 84 75.0
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 5.9e-30 134.8 85 75.3
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 7.6e-30 134.4 116 56.9
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 1.1e-28 130.6 126 52.4
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 1.1e-28 130.6 126 52.4
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 1.4e-28 130.2 127 53.5
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 1.4e-28 130.2 81 75.3
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 1.9e-28 129.8 85 71.8
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.5e-28 129.4 81 74.1
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 3.2e-28 129.0 116 54.3
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 3.2e-28 129.0 138 50.0
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 3.2e-28 129.0 126 52.4
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 1.2e-27 127.1 126 51.6
SMO236G0065 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.1e-27 126.3 114 54.4
SMO236G0087 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 2.1e-27 126.3 114 54.4
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 3.6e-27 125.6 85 69.4
SMO192G0020 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 4.6e-27 125.2 122 52.5
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 3.9e-26 122.1 83 69.9
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 6.7e-26 121.3 142 47.9
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 1.1e-25 120.6 81 69.1
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 1.5e-25 120.2 77 76.6
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 1.5e-25 120.2 84 65.5
MCO04G495 Micromonas commoda HOM05D003466 ORTHO05D004102 4.8e-24 115.2 108 55.6
Prupe.2G026300 Prunus persica HOM05D003466 ORTHO05D004102 4.8e-24 115.2 94 61.7
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 2.6e-22 109.4 66 74.2
Cre05.g232950 Chlamydomonas reinhardtii HOM05D003466 ORTHO05D004102 2.6e-22 109.4 76 64.5
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 1.3e-21 107.1 73 68.5
Rhsim07G0175900 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.3e-21 107.1 78 66.7
PRCOL_00005274 Prasinoderma coloniale HOM05D003466 ORTHO05D004102 1.9e-20 103.2 121 46.3
Os02g0294000 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 1.2e-19 100.5 74 66.2
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 2.1e-19 99.8 118 48.3
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 8.8e-18 94.4 85 58.8
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.7e-16 90.1 62 71.0
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 3.8e-13 79.0 54 68.5
MD01G1107400 Malus domestica HOM05D003466 ORTHO05D004102 1.1e-09 67.4 62 56.5
DCAR_031305 Daucus carota HOM05D000822 ORTHO05D008442 3.7e-08 62.4 67 52.2
Lj1A1073T40 Lonicera japonica HOM05D003466 ORTHO05D004102 1.8e-07 60.1 35 65.7
A10p21580 Brassica napus HOM05D001738 ORTHO05D001644 5.3e-07 58.5 36 69.4
BraA10t44220Z Brassica rapa HOM05D001738 ORTHO05D001644 5.3e-07 58.5 36 69.4
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 7.0e-07 58.2 47 48.9


User provided reference genes

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