Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.7e-137 492.7 246 100.0
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.6e-82 310.1 159 96.9
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 7.7e-82 307.8 159 96.2
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 5.0e-81 305.1 159 95.0
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.2e-79 300.4 159 93.7
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.2e-79 300.4 159 93.7
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.2e-79 300.4 159 93.7
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 2.1e-79 299.7 159 92.5
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 2.3e-78 296.2 159 92.5
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 9.8e-77 290.8 159 91.2
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.7e-76 290.0 159 91.2
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.7e-76 290.0 159 91.2
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.7e-76 290.0 159 91.2
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.7e-76 290.0 159 91.2
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.7e-76 290.0 159 91.2
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.7e-76 290.0 159 91.2
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.7e-76 290.0 159 91.2
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.7e-76 290.0 159 91.2
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 8.3e-76 287.7 159 91.2
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 8.3e-76 287.7 159 91.2
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.1e-75 287.3 159 89.9
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.8e-75 286.6 159 90.6
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.8e-75 286.6 159 90.6
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 9.1e-75 284.3 159 89.9
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 9.1e-75 284.3 159 89.9
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.2e-74 283.9 159 90.6
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.2e-74 283.9 159 90.6
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 1.6e-74 283.5 158 89.2
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 3.5e-74 282.3 159 89.9
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 3.5e-74 282.3 159 89.9
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.5e-74 282.3 159 89.9
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 3.5e-74 282.3 159 89.9
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 5.9e-74 281.6 159 89.3
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 5.9e-74 281.6 159 89.9
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.3e-73 280.4 159 88.7
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.3e-73 280.4 159 88.7
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.7e-73 280.0 159 89.9
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.7e-73 280.0 159 89.9
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 1.7e-73 280.0 159 89.9
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 6.5e-73 278.1 159 88.7
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 8.5e-73 277.7 159 89.3
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 8.5e-73 277.7 159 89.3
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.9e-72 276.6 159 88.7
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.9e-72 276.6 159 88.1
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 2.5e-72 276.2 159 87.4
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 2.5e-72 276.2 159 87.4
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 2.5e-72 276.2 159 87.4
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 2.5e-72 276.2 159 87.4
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 4.2e-72 275.4 159 88.1
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 7.2e-72 274.6 159 87.4
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-71 273.5 144 95.1
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.8e-70 270.0 160 86.9
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.3e-70 269.6 144 93.8
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 4.4e-69 265.4 153 88.2
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 4.4e-69 265.4 153 88.2
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 1.3e-65 253.8 159 82.4
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 8.6e-65 251.1 153 82.4
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 5.6e-64 248.4 158 81.0
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 7.3e-64 248.1 159 80.5
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 2.1e-63 246.5 159 80.5
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 7.5e-61 238.0 159 78.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.9e-60 236.1 144 83.3
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-58 230.3 147 82.3
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.5e-58 229.2 143 81.1
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.3e-57 227.3 153 78.4
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.6e-55 219.2 159 73.0
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 5.2e-54 215.3 124 86.3
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.4e-53 212.6 184 65.8
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.0e-50 201.8 113 87.6
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 7.8e-50 201.4 106 94.3
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 4.3e-48 195.7 106 93.4
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 6.2e-47 191.8 107 91.6
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 4.4e-45 185.7 107 88.8
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 4.4e-45 185.7 105 89.5
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 1.3e-44 184.1 109 83.5
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 7.1e-43 178.3 166 60.2
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.2e-42 177.6 104 84.6
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 3.5e-42 176.0 107 81.3
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 3.5e-42 176.0 103 85.4
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 1.1e-38 164.5 87 94.3
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.0e-37 160.2 165 57.6
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 8.4e-36 154.8 161 49.7
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.3e-33 147.5 80 92.5
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 6.6e-33 145.2 115 70.4
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-30 136.3 119 63.9
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 4.0e-30 136.0 78 83.3
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 5.2e-30 135.6 82 85.4
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 5.2e-30 135.6 81 81.5
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-29 134.0 86 82.6
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 3.9e-25 119.4 64 93.8
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 6.2e-23 112.1 67 82.1
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 5.8e-21 105.5 56 89.3
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 4.9e-20 102.4 145 44.8
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.4e-19 100.9 63 81.0
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.2e-19 99.8 63 77.8
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 9.3e-19 98.2 138 46.4
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.6e-18 97.4 116 53.4
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 3.5e-18 96.3 60 78.3
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.7e-17 91.7 67 71.6
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.9e-16 90.5 175 40.0
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.3e-16 89.4 50 90.0
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 4.8e-15 85.9 154 35.7
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 6.2e-15 85.5 64 70.3
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.1e-15 85.1 132 43.9
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 3.1e-14 83.2 143 42.0
Ah.13g067000 Amaranthus hybridus HOM05D008690 ORTHO05D010874 5.3e-14 82.4 40 95.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 5.8e-13 79.0 59 71.2
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.6e-13 78.6 53 81.1
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 4.9e-12 75.9 50 82.0
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-11 73.6 48 72.9
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 3.2e-11 73.2 34 97.1
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.3e-11 71.6 106 46.2
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-08 63.5 35 80.0
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 7.4e-08 62.0 53 58.5
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 1.4e-06 57.8 66 34.8
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-06 57.0 31 90.3


User provided reference genes

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