Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 9.5e-38 159.8 90 100.0
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 2.8e-29 131.7 76 97.4
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 1.8e-28 129.0 84 86.9
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 1.5e-27 125.9 76 94.7
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 3.4e-27 124.8 77 93.5
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 4.4e-27 124.4 74 95.9
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 4.4e-27 124.4 74 95.9
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 4.4e-27 124.4 77 92.2
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 4.4e-27 124.4 74 95.9
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 4.4e-27 124.4 74 95.9
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 4.4e-27 124.4 74 95.9
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 9.9e-27 123.2 74 95.9
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 9.9e-27 123.2 74 95.9
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 9.9e-27 123.2 74 95.9
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 1.3e-26 122.9 76 93.4
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 1.7e-26 122.5 76 93.4
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 2.2e-26 122.1 74 93.2
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 2.2e-26 122.1 76 92.1
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 2.9e-26 121.7 82 84.1
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 2.9e-26 121.7 82 84.1
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-26 121.7 82 84.1
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 2.9e-26 121.7 82 84.1
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 6.4e-26 120.6 74 94.6
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 8.3e-26 120.2 74 93.2
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 8.3e-26 120.2 74 93.2
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 8.3e-26 120.2 74 93.2
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 8.3e-26 120.2 74 93.2
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 8.3e-26 120.2 74 93.2
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 8.3e-26 120.2 74 93.2
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 8.3e-26 120.2 74 93.2
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 8.3e-26 120.2 76 92.1
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 8.3e-26 120.2 76 92.1
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 8.3e-26 120.2 74 93.2
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 1.1e-25 119.8 76 90.8
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 1.4e-25 119.4 74 93.2
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 1.9e-25 119.0 74 91.9
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 3.2e-25 118.2 75 90.7
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 7.1e-25 117.1 75 88.0
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 7.1e-25 117.1 81 82.7
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 7.1e-25 117.1 81 82.7
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 7.1e-25 117.1 81 82.7
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 9.2e-25 116.7 68 97.1
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 9.2e-25 116.7 75 88.0
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 1.2e-24 116.3 76 88.2
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-24 116.3 81 81.5
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 1.6e-24 115.9 75 90.7
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.6e-24 115.9 79 83.5
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 4.6e-24 114.4 77 87.0
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 4.6e-24 114.4 74 89.2
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 6.0e-24 114.0 81 80.2
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 7.8e-24 113.6 70 92.9
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 1.0e-23 113.2 74 91.9
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 1.3e-23 112.8 82 79.3
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 3.9e-23 111.3 72 88.9
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 3.9e-23 111.3 75 86.7
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 3.9e-23 111.3 67 95.5
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 8.6e-23 110.2 81 77.8
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 8.6e-23 110.2 71 90.1
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 8.6e-23 110.2 71 90.1
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-22 109.8 71 90.1
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 1.5e-22 109.4 81 77.8
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 1.5e-22 109.4 75 85.3
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 1.5e-22 109.4 68 91.2
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-22 108.6 71 90.1
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 2.5e-22 108.6 71 87.3
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 3.3e-22 108.2 67 94.0
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 3.3e-22 108.2 71 88.7
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 4.3e-22 107.8 80 78.8
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 5.6e-22 107.5 78 78.2
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 7.3e-22 107.1 71 87.3
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 7.3e-22 107.1 71 87.3
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 7.3e-22 107.1 71 87.3
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 9.5e-22 106.7 71 88.7
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.2e-21 106.3 73 86.3
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 1.6e-21 105.9 73 84.9
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 1.6e-21 105.9 68 89.7
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 1.6e-21 105.9 81 75.3
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 2.1e-21 105.5 74 86.5
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 3.6e-21 104.8 67 88.1
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.7e-21 104.4 74 77.0
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 8.1e-21 103.6 74 83.8
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 8.1e-21 103.6 71 85.9
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 1.8e-20 102.4 84 77.4
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 4.0e-20 101.3 71 84.5
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 4.0e-20 101.3 81 75.3
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 8.9e-20 100.1 68 85.3
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 8.9e-20 100.1 71 85.9
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-19 99.0 71 83.1
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 2.0e-19 99.0 71 83.1
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 4.4e-19 97.8 112 58.0
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 4.4e-19 97.8 70 84.3
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 7.6e-19 97.1 71 81.7
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.3e-18 96.3 71 77.5
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 2.2e-18 95.5 62 88.7
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 2.2e-18 95.5 76 77.6
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 2.9e-18 95.1 63 87.3
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 3.8e-18 94.7 63 85.7
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 3.8e-18 94.7 62 88.7
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 4.9e-18 94.4 58 93.1
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 6.4e-18 94.0 62 85.5
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-17 92.8 61 86.9
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-17 92.8 59 89.8
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 1.9e-17 92.4 63 85.7
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 2.4e-17 92.0 75 73.3
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 3.2e-17 91.7 62 87.1
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 3.2e-17 91.7 59 88.1
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 4.2e-17 91.3 63 84.1
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 5.4e-17 90.9 59 88.1
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-16 89.7 68 75.0
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 2.7e-16 88.6 59 84.7
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-15 86.3 63 82.5
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 1.7e-15 85.9 61 83.6
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 3.9e-15 84.7 58 81.0
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.9e-14 82.4 78 61.5
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 5.6e-14 80.9 70 65.7
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 5.6e-14 80.9 70 65.7
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 7.3e-14 80.5 75 65.3
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 7.3e-14 80.5 54 85.2
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 1.6e-13 79.3 51 84.3
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 1.6e-13 79.3 72 59.7
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 1.6e-13 79.3 72 59.7
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 2.1e-13 79.0 82 62.2
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 2.1e-13 79.0 56 76.8
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 6.2e-13 77.4 70 67.1
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 6.2e-13 77.4 49 85.7
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 6.2e-13 77.4 49 85.7
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 6.2e-13 77.4 72 63.9
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-12 76.6 56 73.2
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 1.8e-12 75.9 53 81.1
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 3.1e-12 75.1 80 61.2
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 4.0e-12 74.7 46 93.5
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 5.3e-12 74.3 74 66.2
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 5.3e-12 74.3 74 66.2
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 5.3e-12 74.3 59 72.9
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 6.9e-12 73.9 49 85.7
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 9.0e-12 73.6 75 64.0
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 1.5e-11 72.8 42 95.2
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 1.5e-11 72.8 42 95.2
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 2.0e-11 72.4 73 65.8
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 1.3e-10 69.7 40 95.0
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-10 69.7 48 83.3
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 2.2e-10 68.9 54 74.1
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 4.9e-10 67.8 47 83.0
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 1.4e-09 66.2 40 90.0
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 5.4e-09 64.3 63 65.1
Nitab4.5_0010033g0150 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.6e-08 62.8 42 83.3
Haze_27774 Corylus avellana HOM05D006320 ORTHO05D007069 3.5e-08 61.6 71 47.9
Haze_27775 Corylus avellana HOM05D006320 ORTHO05D007069 3.5e-08 61.6 71 47.9
Nitab4.5_0005853g0090 Nicotiana tabacum HOM05D006320 ORTHO05D007069 7.8e-08 60.5 43 74.4
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 7.8e-08 60.5 58 60.3
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 1.7e-07 59.3 62 59.7
SHI31532 Sapria himalayana HOM05D006320 ORTHO05D007069 1.7e-07 59.3 52 63.5
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 3.0e-07 58.5 41 80.5
Peaxi162Scf00446g00053 Petunia axillaris HOM05D006320 ORTHO05D007069 5.1e-07 57.8 33 93.9
CAN.G231.25 Capsicum annuum HOM05D006320 ORTHO05D007069 8.7e-07 57.0 53 62.3
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 8.7e-07 57.0 36 83.3
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 5.6e-06 54.3 34 91.2
ClCG08G001280 Citrullus lanatus HOM05D006320 ORTHO05D007069 7.3e-06 53.9 38 81.6


User provided reference genes

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