Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.7e-231 805.1 428 100.0
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.7e-231 805.1 428 100.0
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.6e-63 247.7 200 67.0
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.5e-51 207.2 110 90.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.5e-51 207.2 105 93.3
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 3.2e-51 206.8 105 92.4
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.6e-50 204.5 105 92.4
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 2.1e-50 204.1 105 92.4
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 6.1e-50 202.6 104 91.3
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.4e-49 201.4 105 91.4
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.4e-49 201.4 105 91.4
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.8e-49 201.1 105 91.4
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.8e-49 201.1 116 83.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 89.5
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 1.1e-48 198.4 105 90.5
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.0e-48 197.6 105 88.6
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 3.3e-48 196.8 105 89.5
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 5.7e-48 196.1 105 89.5
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 5.7e-48 196.1 105 89.5
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 5.7e-48 196.1 105 89.5
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 5.7e-48 196.1 105 89.5
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 5.7e-48 196.1 105 89.5
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 5.7e-48 196.1 112 85.7
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.8e-41 174.5 118 72.9
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 3.3e-40 170.2 94 88.3
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 8.2e-39 165.6 94 86.2
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.7e-37 159.1 113 69.0
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 4.2e-35 153.3 78 92.3
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.6e-34 151.4 188 51.6
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.6e-34 150.2 78 91.0
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.6e-34 150.2 78 91.0
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.6e-34 150.2 78 91.0
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 6.1e-34 149.4 78 91.0
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 3.0e-33 147.1 78 89.7
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 3.0e-33 147.1 78 89.7
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 3.4e-32 143.7 78 87.2
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 4.2e-27 126.7 148 51.4
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 4.2e-27 126.7 68 88.2
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 4.2e-27 126.7 68 88.2
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.6e-24 117.5 124 52.4
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 1.4e-22 111.7 54 96.3
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 5.0e-20 103.2 131 47.3
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 5.2e-17 93.2 68 72.1
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 4.4e-16 90.1 161 37.9
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 1.7e-15 88.2 44 90.9
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 4.1e-14 83.6 48 83.3
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 7.8e-13 79.3 41 90.2
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.0e-12 79.0 43 86.0
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 5.6e-11 73.2 40 85.0
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.6e-10 70.5 62 56.5
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 8.0e-10 69.3 40 82.5
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 8.0e-10 69.3 40 82.5
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.0e-09 68.9 36 86.1
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.0e-09 68.9 141 38.3
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.0e-09 68.9 36 86.1
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 2.3e-09 67.8 34 91.2
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 2.3e-09 67.8 33 90.9
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-09 67.4 65 52.3
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 3.1e-09 67.4 40 80.0
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 8.9e-09 65.9 32 90.6
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 8.9e-09 65.9 32 90.6
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.2e-08 65.5 35 82.9
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 2.0e-08 64.7 60 55.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 2.6e-08 64.3 31 90.3
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.6e-08 64.3 64 51.6
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.4e-08 63.9 32 87.5
EL10Ac5g12759 Beta vulgaris HOM05D001987 ORTHO05D006514 8.3e-07 59.3 34 79.4
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-06 58.9 36 77.8
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 4.1e-06 57.0 80 41.2


User provided reference genes

Program Settings