Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 0.0e+00 1180.2 578 100.0
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 0.0e+00 1177.9 578 99.7
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 0.0e+00 1078.9 576 93.1
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.7e-302 1040.0 577 89.9
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.1e-300 1035.0 576 89.4
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.1e-300 1035.0 576 89.4
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 3.7e-300 1034.2 578 90.0
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.0e-297 1023.8 576 89.6
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 5.5e-296 1020.4 579 89.1
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.2e-295 1019.2 577 89.4
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.5e-293 1012.3 575 88.9
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.5e-293 1012.3 575 88.9
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.7e-292 1007.7 580 88.1
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.0e-290 1001.9 575 87.8
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.0e-289 999.6 576 87.3
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-285 985.3 575 87.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-285 985.3 575 87.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-285 985.3 575 87.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-285 985.3 575 87.1
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.7e-284 982.2 554 89.2
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 4.8e-284 980.7 576 87.0
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.4e-283 979.2 563 87.7
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 3.4e-282 974.5 574 86.8
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.3e-281 972.6 566 85.9
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-280 969.1 570 86.7
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-280 969.1 570 86.7
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 3.6e-279 964.5 578 85.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.5e-274 947.6 543 87.8
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.3e-273 946.0 553 85.7
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.7e-268 927.9 550 85.1
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 7.7e-266 920.2 580 83.1
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 7.7e-266 920.2 580 83.1
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 7.7e-266 920.2 580 83.1
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 7.7e-266 920.2 580 83.1
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 7.7e-266 920.2 580 83.1
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 7.7e-266 920.2 580 83.1
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 9.1e-259 896.7 577 80.4
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 7.7e-258 893.6 574 80.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 6.6e-249 864.0 505 86.9
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.5e-245 852.8 575 77.7
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 7.5e-245 850.5 555 79.1
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 9.8e-245 850.1 575 77.2
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 7.8e-226 787.3 478 84.9
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.2e-202 710.3 392 91.3
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 3.9e-201 705.3 392 90.8
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 6.7e-201 704.5 493 76.1
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 4.5e-189 665.2 401 84.8
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 7.6e-189 664.5 375 88.8
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 7.6e-189 664.5 375 88.8
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.1e-187 660.6 375 88.5
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.5e-187 659.4 375 88.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.2e-186 657.1 375 88.0
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.3e-185 652.9 467 75.4
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.3e-184 649.0 361 90.0
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.3e-177 627.1 575 61.0
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.1e-174 617.5 461 70.7
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 7.7e-173 611.3 360 86.4
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.6e-170 602.1 392 80.6
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-167 593.6 576 59.0
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-165 587.0 401 76.6
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 6.5e-164 581.6 318 90.9
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-160 570.5 374 79.9
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.8e-159 566.2 318 89.3
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 9.4e-147 524.6 576 53.6
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.2e-144 517.7 293 89.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.2e-144 517.7 576 53.3
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.5e-139 500.0 296 84.8
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 2.3e-137 493.4 306 82.0
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.0e-133 480.3 295 83.1
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.3e-132 477.6 375 68.8
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 2.6e-128 463.4 260 89.6
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 1.3e-119 434.5 392 62.8
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-119 434.1 248 85.1
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.9e-119 433.3 285 78.9
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 8.3e-119 431.8 271 81.5
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 5.0e-116 422.5 239 89.5
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.6e-116 422.2 279 78.9
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 5.4e-110 402.5 243 84.4
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.2e-109 401.4 265 77.0
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-104 384.4 239 80.3
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 1.7e-103 380.9 218 88.5
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-102 376.3 289 72.0
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-102 376.3 289 72.0
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 7.1e-102 375.6 852 36.7
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-100 370.9 200 91.0
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-100 370.9 200 91.0
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.7e-100 370.9 202 90.1
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 6.6e-100 369.0 200 90.5
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.8e-97 360.9 273 68.5
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 5.8e-96 355.9 193 90.7
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.9e-95 352.8 193 90.2
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 7.3e-91 339.0 264 67.0
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 6.2e-90 335.9 198 87.9
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 2.6e-88 330.5 289 64.7
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.3e-87 328.2 227 75.3
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.3e-87 328.2 191 89.5
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.3e-87 328.2 263 66.5
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 5.4e-86 322.8 180 92.2
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 3.5e-85 320.1 264 64.4
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 8.7e-84 315.5 170 90.0
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-81 308.5 174 86.8
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 5.8e-80 302.8 194 78.4
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 5.8e-80 302.8 194 78.4
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.7e-79 301.2 174 85.1
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 5.1e-76 289.7 175 81.7
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.3e-74 285.0 171 86.0
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.9e-73 279.3 238 63.0
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 7.6e-72 275.8 144 90.3
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.8e-71 273.5 221 70.6
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 6.5e-71 272.7 163 83.4
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.9e-67 261.2 348 45.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 7.4e-67 259.2 170 76.5
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 7.4e-67 259.2 170 76.5
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 9.7e-67 258.8 162 84.0
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 3.4e-64 250.4 135 93.3
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-62 245.0 143 79.7
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.5e-62 243.0 148 82.4
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 1.2e-61 241.9 120 90.8
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.1e-61 241.1 134 90.3
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 3.6e-61 240.4 132 91.7
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 8.8e-60 235.7 264 54.9
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 7.4e-59 232.6 122 95.1
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 4.5e-56 223.4 148 74.3
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 5.9e-56 223.0 116 87.1
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.2e-54 217.2 126 85.7
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.0e-52 212.2 120 92.5
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 1.5e-51 208.4 116 91.4
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.3e-50 205.3 123 86.2
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.7e-50 204.9 130 79.2
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 1.8e-49 201.4 112 88.4
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 3.4e-48 197.2 108 94.4
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 1.1e-46 192.2 117 87.2
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.4e-43 180.3 331 42.3
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 7.4e-43 179.5 100 93.0
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 2.8e-42 177.6 122 77.0
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.6e-40 171.0 123 74.0
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.6e-40 171.0 167 59.9
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 5.9e-40 169.9 115 76.5
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 3.6e-37 160.6 105 76.2
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.3e-35 154.1 94 86.2
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 2.8e-34 151.0 91 85.7
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 3.7e-34 150.6 75 96.0
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 3.2e-30 137.5 77 83.1
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.3e-28 131.3 93 75.3
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 1.2e-27 129.0 137 55.5
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 5.7e-27 126.7 65 92.3
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 6.3e-26 123.2 181 44.8
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 5.4e-25 120.2 66 90.9
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 1.1e-22 112.5 71 76.1
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-22 112.5 62 88.7
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 2.8e-21 107.8 70 72.9
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.8e-20 105.1 74 74.3
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 2.3e-20 104.8 97 57.7
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.0e-20 104.0 170 41.2
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-18 98.2 195 35.9
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 2.0e-16 91.7 55 83.6
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.0e-16 91.7 63 66.7
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 1.0e-15 89.4 51 72.5
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-14 85.5 55 80.0
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 4.3e-14 84.0 53 86.8
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 1.2e-13 82.4 84 52.4
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 3.6e-13 80.9 49 79.6
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 3.6e-13 80.9 63 65.1
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.3e-12 78.2 146 37.0
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 3.0e-12 77.8 67 61.2
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.8e-12 76.6 115 42.6
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 8.9e-12 76.3 48 77.1
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-11 75.9 49 75.5
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.5e-11 75.5 51 72.5
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 2.2e-10 71.6 45 82.2
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.2e-10 71.6 54 70.4
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 3.7e-10 70.9 47 72.3
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 8.3e-10 69.7 53 66.0
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-09 68.2 45 77.8
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 2.7e-08 64.7 29 93.1
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.0e-08 63.5 38 84.2
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 3.3e-06 57.8 65 53.8
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 7.3e-06 56.6 35 80.0
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 9.5e-06 56.2 27 77.8


User provided reference genes

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