Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g028060 Amaranthus hybridus HOM05D000693 ORTHO05D013694 3.6e-202 708.0 342 100.0
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 2.1e-101 373.2 273 72.5
Ah.01g011800 Amaranthus hybridus HOM05D012323 ORTHO05D013694 1.8e-92 343.6 268 67.9
AUR62008819 Chenopodium quinoa HOM05D000693 ORTHO05D013694 4.1e-81 305.8 315 53.0
AUR62025501 Chenopodium quinoa HOM05D012323 ORTHO05D013694 3.3e-75 286.2 299 52.2
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.2e-69 267.7 233 63.5
AUR62017592 Chenopodium quinoa HOM05D000693 ORTHO05D013694 1.4e-68 264.2 321 47.4
AUR62034312 Chenopodium quinoa HOM05D000693 ORTHO05D013694 4.4e-59 232.6 320 42.5
EL10Ac7g17327 Beta vulgaris HOM05D012323 ORTHO05D013694 1.3e-55 221.1 322 42.9
AUR62039098 Chenopodium quinoa HOM05D000693 ORTHO05D013694 3.3e-54 216.5 302 42.7
EL10Ac8g19749 Beta vulgaris HOM05D000693 ORTHO05D013694 4.0e-52 209.5 304 39.8
AUR62008818 Chenopodium quinoa HOM05D000693 ORTHO05D013694 4.0e-52 209.5 269 46.8
AUR62029784 Chenopodium quinoa HOM05D000693 ORTHO05D013694 2.0e-48 197.2 316 38.9
AUR62031855 Chenopodium quinoa HOM05D000693 ORTHO05D001102 4.4e-43 179.5 268 39.9
AUR62043464 Chenopodium quinoa HOM05D000693 ORTHO05D001102 1.4e-41 174.5 268 39.9
AUR62042232 Chenopodium quinoa HOM05D000693 ORTHO05D013694 3.1e-36 156.8 219 43.8
EL10Ac7g17770 Beta vulgaris HOM05D000873 ORTHO05D001654 1.2e-24 118.2 125 51.2
AUR62018564 Chenopodium quinoa HOM05D000693 ORTHO05D013694 4.6e-24 116.3 259 31.7
AUR62005391 Chenopodium quinoa HOM05D000693 ORTHO05D001102 7.3e-22 109.0 303 28.7
Lj4g0007399 Lotus japonicus HOM05D000693 ORTHO05D001102 6.2e-21 105.9 318 29.6
Hund06000 Selenicereus undatus HOM05D000693 ORTHO05D001102 1.1e-20 105.1 322 26.1
EL10Ac6g13688 Beta vulgaris HOM05D000693 ORTHO05D001102 1.4e-20 104.8 321 27.7
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 1.4e-20 104.8 327 26.0
Dinv33979 Davidia involucrata HOM05D000693 ORTHO05D001102 1.4e-20 104.8 312 29.5
Atru.chr7.1820 Acer truncatum HOM05D000693 ORTHO05D001102 1.8e-20 104.4 323 28.5
EL10Ac6g13687 Beta vulgaris HOM05D000693 ORTHO05D001102 2.4e-20 104.0 315 28.3
Manes.12G027700 Manihot esculenta HOM05D000693 ORTHO05D001102 3.1e-20 103.6 321 26.8
Rhsim12G0116900 Rhododendron simsii HOM05D000693 ORTHO05D001102 4.0e-20 103.2 316 26.6
AUR62014053 Chenopodium quinoa HOM05D000693 ORTHO05D001102 1.2e-19 101.7 321 27.1
AUR62014311 Chenopodium quinoa HOM05D012323 ORTHO05D026478 1.5e-19 101.3 273 30.8
Rhsim12G0116800 Rhododendron simsii HOM05D000693 ORTHO05D001102 1.5e-19 101.3 310 27.4
GSVIVG01013750001 Vitis vinifera HOM05D000693 ORTHO05D001102 7.6e-19 99.0 326 27.6
QL03p059876 Quercus lobata HOM05D000693 ORTHO05D001102 1.3e-18 98.2 323 28.5
FAN17G1899 Fragaria x ananassa HOM05D000693 ORTHO05D001102 1.7e-18 97.8 320 29.1
Manes.12G027800 Manihot esculenta HOM05D000693 ORTHO05D001102 1.7e-18 97.8 323 26.9
FAN07G0393 Fragaria x ananassa HOM05D000693 ORTHO05D001102 2.2e-18 97.4 320 29.1
FvH4_4g34250 Fragaria vesca HOM05D000693 ORTHO05D001102 3.8e-18 96.7 320 29.1
FAN22G0877 Fragaria x ananassa HOM05D000693 ORTHO05D001102 4.9e-18 96.3 320 29.1
Cpa.g.sc69.54 Carica papaya HOM05D000693 ORTHO05D001102 6.4e-18 95.9 313 27.5
QL03p059954 Quercus lobata HOM05D000693 ORTHO05D001102 6.4e-18 95.9 315 28.9
GSVIVG01013758001 Vitis vinifera HOM05D000693 ORTHO05D001102 6.4e-18 95.9 329 27.4
QL03p060032 Quercus lobata HOM05D000693 ORTHO05D001102 8.4e-18 95.5 315 28.9
Rhsim12G0116700 Rhododendron simsii HOM05D000693 ORTHO05D001102 8.4e-18 95.5 308 26.9
Cfa009158 Carpinus fangiana HOM05D000693 ORTHO05D001102 1.1e-17 95.1 322 28.0
CiPaw.05G152300 Carya illinoinensis HOM05D000693 ORTHO05D001102 1.1e-17 95.1 321 25.5
ClCG08G001470 Citrullus lanatus HOM05D000693 ORTHO05D001102 1.1e-17 95.1 322 26.1
FAN12G1892 Fragaria x ananassa HOM05D000693 ORTHO05D001102 2.4e-17 94.0 320 28.8
AUR62005390 Chenopodium quinoa HOM05D000693 ORTHO05D001102 3.2e-17 93.6 316 27.8
Sc04g0009200 Simmondsia chinensis HOM05D000693 ORTHO05D001102 3.2e-17 93.6 320 26.6
Ah.02g129980 Amaranthus hybridus HOM05D000693 ORTHO05D001102 4.2e-17 93.2 321 26.5
Cpa.g.sc69.55 Carica papaya HOM05D000693 ORTHO05D001102 4.2e-17 93.2 311 28.0
Cfa009157 Carpinus fangiana HOM05D000693 ORTHO05D001102 4.2e-17 93.2 312 27.6
AUR62028799 Chenopodium quinoa HOM05D012323 ORTHO05D026478 4.2e-17 93.2 183 34.4
QL03p059901 Quercus lobata HOM05D000693 ORTHO05D001102 4.2e-17 93.2 315 28.3
QL03p059988 Quercus lobata HOM05D000693 ORTHO05D001102 4.2e-17 93.2 315 28.3
TAR371G0111 Trochodendron aralioides HOM05D000693 ORTHO05D001102 4.2e-17 93.2 311 28.0
Ah.06g184690 Amaranthus hybridus HOM05D012323 ORTHO05D026478 5.4e-17 92.8 315 30.8
Cfa009160 Carpinus fangiana HOM05D000693 ORTHO05D001102 1.2e-16 91.7 259 29.0
Nn4g22752 Nelumbo nucifera HOM05D000693 ORTHO05D001102 1.2e-16 91.7 310 28.4
arahy.Tifrunner.gnm1.ann1.A4VS3L Arachis hypogaea HOM05D000693 ORTHO05D001102 1.6e-16 91.3 316 27.5
Lalb_Chr05g0228211 Lupinus albus HOM05D000693 ORTHO05D001102 1.6e-16 91.3 309 26.9
MD16G1094600 Malus domestica HOM05D000693 ORTHO05D001102 2.1e-16 90.9 318 27.0
Aa31LG2G10040 Aethionema arabicum HOM05D000693 ORTHO05D001102 2.7e-16 90.5 315 27.3
Lalb_Chr16g0392381 Lupinus albus HOM05D000693 ORTHO05D001102 3.5e-16 90.1 318 28.3
AUR62014052 Chenopodium quinoa HOM05D000693 ORTHO05D001102 4.6e-16 89.7 317 27.4
arahy.Tifrunner.gnm1.ann1.MZYS79 Arachis hypogaea HOM05D000693 ORTHO05D001102 6.0e-16 89.4 316 27.2
AUR62036474 Chenopodium quinoa HOM05D012323 ORTHO05D026478 6.0e-16 89.4 170 34.1
MELO3C022138.2 Cucumis melo HOM05D000693 ORTHO05D001102 6.0e-16 89.4 315 26.0
CsaV3_5G039610 Cucumis sativus L. HOM05D000693 ORTHO05D001102 6.0e-16 89.4 318 25.8
Lsat_1_v5_gn_0_37240 Lactuca sativa HOM05D000693 ORTHO05D001102 6.0e-16 89.4 312 26.3
MD13G1093200 Malus domestica HOM05D000693 ORTHO05D001102 6.0e-16 89.4 323 26.9
Dinv15284 Davidia involucrata HOM05D000693 ORTHO05D001102 7.8e-16 89.0 321 25.5
Dinv24840 Davidia involucrata HOM05D000693 ORTHO05D001102 7.8e-16 89.0 321 24.9
Sc04g0009210 Simmondsia chinensis HOM05D000693 ORTHO05D001102 7.8e-16 89.0 312 26.6
Hund05999 Selenicereus undatus HOM05D000693 ORTHO05D001102 1.3e-15 88.2 313 27.5
DCAR_031110 Daucus carota HOM05D000693 ORTHO05D001102 2.3e-15 87.4 308 27.6
GSVIVG01013749001 Vitis vinifera HOM05D000693 ORTHO05D001102 2.3e-15 87.4 317 28.7
Cpa.g.sc69.56 Carica papaya HOM05D000693 ORTHO05D001102 3.0e-15 87.0 324 25.9
MELO3C022139.2 Cucumis melo HOM05D000693 ORTHO05D001102 3.0e-15 87.0 319 25.7
TAR371G0542 Trochodendron aralioides HOM05D000693 ORTHO05D001102 3.0e-15 87.0 318 27.7
CSS0038467 Camellia sinensis var. sinensis HOM05D000693 ORTHO05D001102 3.9e-15 86.7 322 25.5
ECA246G4497 Erigeron canadensis HOM05D000693 ORTHO05D001102 3.9e-15 86.7 309 27.8
A01p29230 Brassica napus HOM05D000693 ORTHO05D001102 5.1e-15 86.3 312 27.2
Cfa009161 Carpinus fangiana HOM05D000693 ORTHO05D001102 5.1e-15 86.3 321 24.6
Sed0009984 Sechium edule HOM05D000693 ORTHO05D001102 5.1e-15 86.3 269 27.9
TAR371G1158 Trochodendron aralioides HOM05D000693 ORTHO05D001102 5.1e-15 86.3 318 27.7
CsaV3_5G039620 Cucumis sativus L. HOM05D000693 ORTHO05D001102 6.6e-15 85.9 320 25.6
Cc11_g15190 Coffea canephora HOM05D000693 ORTHO05D001102 8.7e-15 85.5 328 24.4
Eucgr.H02588 Eucalyptus grandis HOM05D000693 ORTHO05D001102 8.7e-15 85.5 326 26.4
MBI19_g05289_MAGBIO Magnolia biondii HOM05D000693 ORTHO05D001102 8.7e-15 85.5 308 27.3
Potri.010G060300 Populus trichocarpa HOM05D000693 ORTHO05D001102 8.7e-15 85.5 318 23.9
FvH4_4g34260 Fragaria vesca HOM05D000693 ORTHO05D001102 1.1e-14 85.1 324 25.3
FAN12G3377 Fragaria x ananassa HOM05D000693 ORTHO05D001102 1.1e-14 85.1 324 25.3
SEGI_03558 Sequoiadendron giganteum HOM05D000693 ORTHO05D001102 1.1e-14 85.1 324 25.9
Zm00001eb019530 Zea mays HOM05D000693 ORTHO05D001102 1.1e-14 85.1 322 26.1
MD16G1094200 Malus domestica HOM05D000693 ORTHO05D001102 1.5e-14 84.7 311 26.4
MD16G1094400 Malus domestica HOM05D000693 ORTHO05D001102 1.5e-14 84.7 323 26.3
vmacro16241 Vaccinium macrocarpon HOM05D000693 ORTHO05D001102 1.5e-14 84.7 321 26.2
Hma1.2p1_0160F.1_g070940 Hydrangea macrophylla HOM05D000693 ORTHO05D001102 1.9e-14 84.3 313 27.8
Aqoxy3G02925 Aquilegia oxysepala HOM05D000693 ORTHO05D001102 2.5e-14 84.0 325 25.8
AUR62005759 Chenopodium quinoa HOM05D012323 ORTHO05D138505 2.5e-14 84.0 124 40.3
AUR62037047 Chenopodium quinoa HOM05D012323 ORTHO05D137999 2.5e-14 84.0 288 28.8
Nitab4.5_0000203g0140 Nicotiana tabacum HOM05D000693 ORTHO05D001102 2.5e-14 84.0 322 25.5
Nn5g27697 Nelumbo nucifera HOM05D000693 ORTHO05D001102 3.3e-14 83.6 266 24.1
MD13G1093300 Malus domestica HOM05D000693 ORTHO05D001102 4.3e-14 83.2 307 26.1
THA.LOC104823646 Tarenaya hassleriana HOM05D000693 ORTHO05D001102 4.3e-14 83.2 323 25.7
Haze_12195 Corylus avellana HOM05D000693 ORTHO05D001102 5.6e-14 82.8 266 27.1
Hma1.2p1_0160F.1_g070950 Hydrangea macrophylla HOM05D000693 ORTHO05D001102 5.6e-14 82.8 313 25.9
MBI18_g32827_MAGBIO Magnolia biondii HOM05D000693 ORTHO05D001102 5.6e-14 82.8 263 25.9
COL.COLO4_24187 Corchorus olitorius HOM05D000693 ORTHO05D001102 7.3e-14 82.4 323 25.4
MELO3C022141.2 Cucumis melo HOM05D000693 ORTHO05D001102 9.6e-14 82.0 286 27.6
Peaxi162Scf00338g00426 Petunia axillaris HOM05D000693 ORTHO05D001102 9.6e-14 82.0 315 26.7
Zm00001eb019550 Zea mays HOM05D000693 ORTHO05D001102 9.6e-14 82.0 323 25.1
CARHR052630 Cardamine hirsuta HOM05D000693 ORTHO05D001102 1.6e-13 81.3 313 27.5
VMungo0251G0207 Vigna mungo HOM05D000693 ORTHO05D001102 2.1e-13 80.9 322 25.8
ATR0006G006 Amborella trichopoda HOM05D000693 ORTHO05D001102 2.8e-13 80.5 249 25.7
CSS0004274 Camellia sinensis var. sinensis HOM05D000693 ORTHO05D001102 2.8e-13 80.5 321 24.9
Potri.010G059550 Populus trichocarpa HOM05D000693 ORTHO05D001102 2.8e-13 80.5 265 24.9
Sed0021488 Sechium edule HOM05D000693 ORTHO05D001102 2.8e-13 80.5 301 25.9
Potri.010G060100 Populus trichocarpa HOM05D000693 ORTHO05D001102 3.6e-13 80.1 302 25.2
Prupe.1G252100 Prunus persica HOM05D000693 ORTHO05D001102 3.6e-13 80.1 264 27.3
Aqoxy3G02926 Aquilegia oxysepala HOM05D000693 ORTHO05D001102 6.2e-13 79.3 266 26.3
CsaV3_5G039640 Cucumis sativus L. HOM05D000693 ORTHO05D001102 6.2e-13 79.3 287 27.5
Prupe.1G171000 Prunus persica HOM05D000693 ORTHO05D001102 6.2e-13 79.3 264 26.5
Prupe.1G252200 Prunus persica HOM05D000693 ORTHO05D001102 6.2e-13 79.3 264 26.5
Sed0026221 Sechium edule HOM05D000693 ORTHO05D001102 6.2e-13 79.3 316 26.6
CSS0026451 Camellia sinensis var. sinensis HOM05D000693 ORTHO05D001102 8.1e-13 79.0 322 24.5
Oeu003456.1 Olea europaea HOM05D000693 ORTHO05D001102 1.1e-12 78.6 316 25.6
Potri.010G059401 Populus trichocarpa HOM05D000693 ORTHO05D001102 1.1e-12 78.6 265 24.9
Thecc.02G251900 Theobroma cacao HOM05D000693 ORTHO05D001102 1.4e-12 78.2 323 25.4
Actinidia15050 Actinidia chinensis HOM05D000693 ORTHO05D001102 1.8e-12 77.8 313 24.6
AUR62015132 Chenopodium quinoa HOM05D012323 ORTHO05D013694 1.8e-12 77.8 106 42.5
RcHm_v2.0_Chr6g0250421 Rosa chinensis HOM05D000693 ORTHO05D001102 1.8e-12 77.8 323 25.1
ATR0006G073 Amborella trichopoda HOM05D000693 ORTHO05D001102 2.4e-12 77.4 317 24.3
MD16G1094500 Malus domestica HOM05D000693 ORTHO05D001102 3.1e-12 77.0 265 26.8
Potri.010G059600 Populus trichocarpa HOM05D000693 ORTHO05D001102 3.1e-12 77.0 247 26.7
Potri.010G060200 Populus trichocarpa HOM05D000693 ORTHO05D001102 3.1e-12 77.0 247 26.3
Prupe.1G252000 Prunus persica HOM05D000693 ORTHO05D001102 3.1e-12 77.0 314 24.8
SMO351G0523 Selaginella moellendorffii HOM05D000693 ORTHO05D001102 3.1e-12 77.0 316 24.1
Sabra10G0045900 Salix brachista HOM05D000693 ORTHO05D001102 4.0e-12 76.6 320 22.8
Potri.010G059900 Populus trichocarpa HOM05D000693 ORTHO05D001102 5.3e-12 76.3 247 25.9
Sabra10G0046200 Salix brachista HOM05D000693 ORTHO05D001102 5.3e-12 76.3 318 22.3
Cc11_g14760 Coffea canephora HOM05D000693 ORTHO05D001102 6.9e-12 75.9 308 26.3
Potri.010G059700 Populus trichocarpa HOM05D000693 ORTHO05D001102 6.9e-12 75.9 247 26.3
MBI19_g05288_MAGBIO Magnolia biondii HOM05D000693 ORTHO05D001102 9.0e-12 75.5 301 26.2
Os01g0794400 Oryza sativa ssp. japonica HOM05D000693 ORTHO05D001102 1.2e-11 75.1 288 24.7
Aqoxy1G02164 Aquilegia oxysepala HOM05D000693 ORTHO05D001102 1.5e-11 74.7 273 24.9
Ciclev10010235m.g Citrus clementina HOM05D000693 ORTHO05D001102 1.5e-11 74.7 265 24.9
Rhsim12G0116600 Rhododendron simsii HOM05D000693 ORTHO05D001102 1.5e-11 74.7 264 26.9
CSS0020878 Camellia sinensis var. sinensis HOM05D000693 ORTHO05D001102 2.0e-11 74.3 266 25.9
CSS0047412 Camellia sinensis var. sinensis HOM05D000693 ORTHO05D001102 2.0e-11 74.3 266 25.9
Sc04g0009190 Simmondsia chinensis HOM05D000693 ORTHO05D001102 2.0e-11 74.3 258 26.0
Sabra10G0046300 Salix brachista HOM05D000693 ORTHO05D001102 2.6e-11 73.9 320 22.8
MBI11_g13785_MAGBIO Magnolia biondii HOM05D000693 ORTHO05D001102 3.4e-11 73.6 304 26.0
EL10Ac9g21343 Beta vulgaris HOM05D000499 ORTHO05D006811 9.9e-11 72.0 69 56.5
Duzib268G1238 Durio zibethinus HOM05D000693 ORTHO05D001102 9.9e-11 72.0 307 25.1
CDE07G0436 Ceratophyllum demersum HOM05D000693 ORTHO05D001102 1.7e-10 71.2 270 27.4
ATR0794G054 Amborella trichopoda HOM05D000693 ORTHO05D001102 2.2e-10 70.9 279 24.7
Eucgr.H02589 Eucalyptus grandis HOM05D000693 ORTHO05D001102 2.9e-10 70.5 318 25.2
CDE07G1078 Ceratophyllum demersum HOM05D000693 ORTHO05D001102 4.9e-10 69.7 263 25.9
EL10Ac6g13686 Beta vulgaris HOM05D000693 ORTHO05D001102 6.4e-10 69.3 244 25.8
CAN.G682.6 Capsicum annuum HOM05D000693 ORTHO05D001102 6.4e-10 69.3 300 27.0
AUR62038989 Chenopodium quinoa HOM05D012323 ORTHO05D000077 1.4e-09 68.2 86 40.7
Sopen05g001490 Solanum pennellii HOM05D000693 ORTHO05D001102 1.4e-09 68.2 308 24.7
Hund25355 Selenicereus undatus HOM05D000693 ORTHO05D001102 2.4e-09 67.4 261 24.9
Potri.008G175600 Populus trichocarpa HOM05D000693 ORTHO05D001102 3.2e-09 67.0 262 27.5
Sabra10G0046000 Salix brachista HOM05D000693 ORTHO05D001102 5.4e-09 66.2 238 24.4
MELO3C022140.2 Cucumis melo HOM05D000693 ORTHO05D001102 7.1e-09 65.9 263 24.7
Duzib251G0642 Durio zibethinus HOM05D000693 ORTHO05D001102 9.3e-09 65.5 270 25.2
Eucgr.H02593 Eucalyptus grandis HOM05D000693 ORTHO05D001102 2.1e-08 64.3 273 23.1
Glyma.08G285900 Glycine max HOM05D000693 ORTHO05D001102 2.7e-08 63.9 247 26.3
TPR.G6178 Trifolium pratense HOM05D000693 ORTHO05D001102 6.0e-08 62.8 247 25.5
TAR626G0471 Trochodendron aralioides HOM05D000693 ORTHO05D001102 6.0e-08 62.8 247 23.9
Sp2g04400 Schrenkiella parvula HOM05D000693 ORTHO05D001102 1.3e-07 61.6 269 26.0
MBI11_g32267_MAGBIO Magnolia biondii HOM05D000693 ORTHO05D001102 3.0e-07 60.5 304 23.7
PGR142G3263 Punica granatum HOM05D000005 ORTHO05D336890 3.0e-07 60.5 113 33.6
PGR119G0380 Punica granatum HOM05D000693 ORTHO05D001102 3.9e-07 60.1 249 24.5
HPP92_016233 Vanilla planifolia HOM05D000693 ORTHO05D001102 6.6e-07 59.3 249 24.1
Cpa.g.sc26.273 Carica papaya HOM05D000693 ORTHO05D001102 8.7e-07 58.9 272 25.0
PGR142G3211 Punica granatum HOM05D000005 ORTHO05D000012 1.9e-06 57.8 129 29.5
vmacro16244 Vaccinium macrocarpon HOM05D000693 ORTHO05D001102 3.3e-06 57.0 256 24.2
TPR.G24630 Trifolium pratense HOM05D000693 ORTHO05D001102 7.3e-06 55.8 113 33.6
COL.COLO4_26095 Corchorus olitorius HOM05D000693 ORTHO05D001102 9.6e-06 55.5 265 24.5
Eucgr.G01004 Eucalyptus grandis HOM05D000693 ORTHO05D001102 9.6e-06 55.5 105 32.4


User provided reference genes

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