Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.00g237900 Amaranthus hybridus HOM05D002709 ORTHO05D002914 1.9e-43 178.7 88 100.0
Ah.01g011820 Amaranthus hybridus HOM05D002709 ORTHO05D002914 1.9e-43 178.7 88 100.0
Ah.10g028040 Amaranthus hybridus HOM05D002709 ORTHO05D002914 1.9e-43 178.7 88 100.0
AUR62014519 Chenopodium quinoa HOM05D002709 ORTHO05D002914 3.7e-18 94.7 78 66.7
AUR62038015 Chenopodium quinoa HOM05D002709 ORTHO05D002914 3.7e-18 94.7 78 66.7
Hund17163 Selenicereus undatus HOM05D002709 ORTHO05D002914 4.1e-17 91.3 83 61.4
AUR62032672 Chenopodium quinoa HOM05D002709 ORTHO05D002914 5.9e-16 87.4 74 64.9
AUR62035295 Chenopodium quinoa HOM05D002709 ORTHO05D002914 1.9e-14 82.4 71 64.8
EL10Ac3g06800 Beta vulgaris HOM05D002709 ORTHO05D002914 2.1e-13 79.0 72 61.1
EL10Ac1g00672 Beta vulgaris HOM05D002709 ORTHO05D002914 1.4e-12 76.3 79 55.7
SGA_v2.0_scaffold4G02211 Striga asiatica HOM05D002709 ORTHO05D002914 1.3e-10 69.7 47 74.5
Migut.N01685 Erythranthe guttata HOM05D002709 ORTHO05D002914 2.8e-10 68.6 51 70.6
Hma1.2p1_0420F.1_g149790 Hydrangea macrophylla HOM05D002709 ORTHO05D002914 4.8e-10 67.8 82 52.4
Manes.07G013000 Manihot esculenta HOM05D002709 ORTHO05D002914 8.2e-10 67.0 73 52.1
FvH4_7g07050 Fragaria vesca HOM05D002709 ORTHO05D002914 1.1e-09 66.6 73 54.8
vmacro13577 Vaccinium macrocarpon HOM05D002709 ORTHO05D002914 1.1e-09 66.6 82 47.6
GSVIVG01011330001 Vitis vinifera HOM05D002709 ORTHO05D002914 1.1e-09 66.6 71 53.5
Rhsim07G0044100 Rhododendron simsii HOM05D002709 ORTHO05D002914 1.4e-09 66.2 81 48.1
RcHm_v2.0_Chr1g0337011 Rosa chinensis HOM05D002709 ORTHO05D002914 1.4e-09 66.2 58 60.3
Sabra06G0155400 Salix brachista HOM05D002709 ORTHO05D002914 1.4e-09 66.2 51 66.7
Sc26g0002000 Simmondsia chinensis HOM05D002709 ORTHO05D002914 1.4e-09 66.2 50 70.0
Cc02_g26300 Coffea canephora HOM05D002709 ORTHO05D002914 1.8e-09 65.9 52 67.3
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 2.4e-09 65.5 73 54.8
MD02G1240500 Malus domestica HOM05D002709 ORTHO05D002914 2.4e-09 65.5 57 61.4
Manes.10G132400 Manihot esculenta HOM05D002709 ORTHO05D002914 2.4e-09 65.5 55 61.8
CAN.G700.27 Capsicum annuum HOM05D002709 ORTHO05D002914 3.1e-09 65.1 52 65.4
COL.COLO4_19335 Corchorus olitorius HOM05D002709 ORTHO05D002914 3.1e-09 65.1 69 56.5
Dinv43535 Davidia involucrata HOM05D002709 ORTHO05D002914 4.1e-09 64.7 54 66.7
Sabra16G0069500 Salix brachista HOM05D002709 ORTHO05D002914 4.1e-09 64.7 51 64.7
Thecc.10G002900 Theobroma cacao HOM05D002709 ORTHO05D002914 4.1e-09 64.7 64 60.9
Oeu060684.1 Olea europaea HOM05D002709 ORTHO05D002914 5.3e-09 64.3 46 71.7
unitig_85.g27218 Utricularia gibba HOM05D002709 ORTHO05D002914 5.3e-09 64.3 54 63.0
Atru.chr12.829 Acer truncatum HOM05D002709 ORTHO05D002914 6.9e-09 63.9 47 72.3
Migut.N01686 Erythranthe guttata HOM05D002709 ORTHO05D002914 6.9e-09 63.9 47 70.2
Lj7A558T39 Lonicera japonica HOM05D002709 ORTHO05D002914 6.9e-09 63.9 46 71.7
Oeu060682.1 Olea europaea HOM05D002709 ORTHO05D002914 6.9e-09 63.9 47 68.1
Oeu060686.1 Olea europaea HOM05D002709 ORTHO05D002914 6.9e-09 63.9 47 68.1
TWI23G0406 Tripterygium wilfordii HOM05D002709 ORTHO05D002914 6.9e-09 63.9 48 70.8
CSS0035517 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 9.1e-09 63.5 54 63.0
DCAR_025008 Daucus carota HOM05D002709 ORTHO05D002914 9.1e-09 63.5 68 51.5
Dinv43981 Davidia involucrata HOM05D002709 ORTHO05D002914 9.1e-09 63.5 47 72.3
MD07G1076500 Malus domestica HOM05D002709 ORTHO05D002914 9.1e-09 63.5 60 55.0
Potri.006G202100 Populus trichocarpa HOM05D002709 ORTHO05D002914 9.1e-09 63.5 51 64.7
QL04p052179 Quercus lobata HOM05D002709 ORTHO05D002914 9.1e-09 63.5 50 68.0
PGSC0003DMG400001791 Solanum tuberosum HOM05D002709 ORTHO05D002914 9.1e-09 63.5 75 49.3
TWI14G0450 Tripterygium wilfordii HOM05D002709 ORTHO05D002914 9.1e-09 63.5 57 66.7
FvH4_7g02380 Fragaria vesca HOM05D002709 ORTHO05D002914 1.2e-08 63.2 73 53.4
Peaxi162Scf00592g00446 Petunia axillaris HOM05D002709 ORTHO05D002914 1.2e-08 63.2 52 61.5
Atru.chr6.2608 Acer truncatum HOM05D002709 ORTHO05D002914 1.5e-08 62.8 46 73.9
Actinidia31749 Actinidia chinensis HOM05D002709 ORTHO05D002914 1.5e-08 62.8 71 53.5
Gohir.D06G164500 Gossypium hirsutum HOM05D002709 ORTHO05D002914 1.5e-08 62.8 64 59.4
Prupe.2G097200 Prunus persica HOM05D002709 ORTHO05D002914 1.5e-08 62.8 54 64.8
CSS0026946 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 2.0e-08 62.4 54 61.1
Lj7A558T38 Lonicera japonica HOM05D002709 ORTHO05D002914 2.0e-08 62.4 71 54.9
Aqoxy3G02033 Aquilegia oxysepala HOM05D002709 ORTHO05D002914 2.6e-08 62.0 46 71.7
FAN01G2882 Fragaria x ananassa HOM05D002709 ORTHO05D002914 2.6e-08 62.0 73 52.1
Glyma.05G134400 Glycine max HOM05D002709 ORTHO05D002914 2.6e-08 62.0 47 70.2
Gorai.010G191900 Gossypium raimondii HOM05D002709 ORTHO05D002914 2.6e-08 62.0 64 59.4
MD02G1240400 Malus domestica HOM05D002709 ORTHO05D002914 2.6e-08 62.0 63 58.7
Medtr4g094762 Medicago truncatula HOM05D002709 ORTHO05D002914 2.6e-08 62.0 47 70.2
Solyc01g081100.3 Solanum lycopersicum HOM05D002709 ORTHO05D002914 2.6e-08 62.0 45 68.9
arahy.Tifrunner.gnm1.ann1.ALCT10 Arachis hypogaea HOM05D002709 ORTHO05D002914 3.4e-08 61.6 47 68.1
arahy.Tifrunner.gnm1.ann1.UPIP6Z Arachis hypogaea HOM05D002709 ORTHO05D002914 3.4e-08 61.6 47 68.1
Glyma.08G089100 Glycine max HOM05D002709 ORTHO05D002914 3.4e-08 61.6 47 68.1
Gorai.012G081100 Gossypium raimondii HOM05D002709 ORTHO05D002914 3.4e-08 61.6 50 66.0
Gohir.A06G158500 Gossypium hirsutum HOM05D002709 ORTHO05D002914 4.5e-08 61.2 64 57.8
MD07G1076400 Malus domestica HOM05D002709 ORTHO05D002914 4.5e-08 61.2 58 56.9
Nn3g19279 Nelumbo nucifera HOM05D002709 ORTHO05D002914 4.5e-08 61.2 79 51.9
SalBow4G0249 Salvia bowleyana HOM05D002709 ORTHO05D002914 4.5e-08 61.2 47 70.2
SalBow4G1080 Salvia bowleyana HOM05D002709 ORTHO05D002914 4.5e-08 61.2 46 69.6
SalBow4G1996 Salvia bowleyana HOM05D002709 ORTHO05D002914 4.5e-08 61.2 47 70.2
CSS0031913 Camellia sinensis var. sinensis HOM05D002709 ORTHO05D002914 5.9e-08 60.8 71 52.1
Lalb_Chr12g0209161 Lupinus albus HOM05D002709 ORTHO05D002914 5.9e-08 60.8 44 70.5
Sopen01g032710 Solanum pennellii HOM05D002709 ORTHO05D002914 5.9e-08 60.8 75 48.0
VMungo0251G2843 Vigna mungo HOM05D002709 ORTHO05D002914 5.9e-08 60.8 56 60.7
DCAR_029561 Daucus carota HOM05D002709 ORTHO05D002914 7.7e-08 60.5 46 65.2
Gohir.A06G158600 Gossypium hirsutum HOM05D002709 ORTHO05D002914 7.7e-08 60.5 64 57.8
Gohir.D06G164400 Gossypium hirsutum HOM05D002709 ORTHO05D002914 7.7e-08 60.5 64 57.8
Gorai.010G191800 Gossypium raimondii HOM05D002709 ORTHO05D002914 7.7e-08 60.5 64 57.8
Lsat_1_v5_gn_4_40321 Lactuca sativa HOM05D002709 ORTHO05D002914 7.7e-08 60.5 47 63.8
Nitab4.5_0004412g0070 Nicotiana tabacum HOM05D002709 ORTHO05D002914 7.7e-08 60.5 53 58.5
Phvul.002G187950 Phaseolus vulgaris HOM05D002709 ORTHO05D002914 7.7e-08 60.5 47 68.1
TPR.G23841 Trifolium pratense HOM05D002709 ORTHO05D002914 7.7e-08 60.5 47 68.1
unitig_43.g31046 Utricularia gibba HOM05D002709 ORTHO05D002914 7.7e-08 60.5 47 66.0
unitig_578.g16500 Utricularia gibba HOM05D002709 ORTHO05D002914 7.7e-08 60.5 47 66.0
CiPaw.13G149800 Carya illinoinensis HOM05D002709 ORTHO05D002914 1.0e-07 60.1 45 71.1
Ciclev10019669m.g Citrus clementina HOM05D002709 ORTHO05D002914 1.0e-07 60.1 47 68.1
MELO3C020370.2 Cucumis melo HOM05D002709 ORTHO05D002914 1.0e-07 60.1 46 69.6
CsaV3_2G011050 Cucumis sativus L. HOM05D002709 ORTHO05D002914 1.0e-07 60.1 46 69.6
Glyma.16G090900 Glycine max HOM05D002709 ORTHO05D002914 1.0e-07 60.1 39 76.9
Lalb_Chr07g0188211 Lupinus albus HOM05D002709 ORTHO05D002914 1.0e-07 60.1 47 68.1
PSO063G5588 Papaver somniferum HOM05D002709 ORTHO05D002914 1.0e-07 60.1 50 66.0
Haze_15815 Corylus avellana HOM05D002709 ORTHO05D002914 1.3e-07 59.7 54 61.1
HanXRQChr03g0088191 Helianthus annuus HOM05D002709 ORTHO05D002914 1.3e-07 59.7 59 55.9
ECA234G2181 Erigeron canadensis HOM05D002709 ORTHO05D002914 1.7e-07 59.3 47 61.7
Lj4g0026815 Lotus japonicus HOM05D002709 ORTHO05D002914 1.7e-07 59.3 46 65.2
Nitab4.5_0004594g0050 Nicotiana tabacum HOM05D002709 ORTHO05D002914 1.7e-07 59.3 53 56.6
Potri.016G068500 Populus trichocarpa HOM05D002709 ORTHO05D002914 1.7e-07 59.3 49 65.3
VMungo0251G0109 Vigna mungo HOM05D002709 ORTHO05D002914 1.7e-07 59.3 72 54.2
Lj4g0001908 Lotus japonicus HOM05D002709 ORTHO05D002914 2.2e-07 58.9 75 50.7
Lj4g0018416 Lotus japonicus HOM05D002709 ORTHO05D002914 2.2e-07 58.9 75 50.7
Nitab4.5_0012200g0010 Nicotiana tabacum HOM05D002709 ORTHO05D002914 2.2e-07 58.9 44 68.2
SalBow4G3022 Salvia bowleyana HOM05D002709 ORTHO05D002914 2.2e-07 58.9 46 67.4
Actinidia05815 Actinidia chinensis HOM05D002709 ORTHO05D002914 2.9e-07 58.5 51 62.7
Lj4g0027774 Lotus japonicus HOM05D002709 ORTHO05D002914 2.9e-07 58.5 72 51.4
Nitab4.5_0000050g0090 Nicotiana tabacum HOM05D002709 ORTHO05D002914 2.9e-07 58.5 48 62.5
PSO782G1354 Papaver somniferum HOM05D002709 ORTHO05D002914 2.9e-07 58.5 50 64.0
CANSAT25G2627 Cannabis sativa HOM05D002709 ORTHO05D002914 3.8e-07 58.2 71 50.7
Cfa003674 Carpinus fangiana HOM05D002709 ORTHO05D002914 3.8e-07 58.2 51 62.7
ClCG06G008120 Citrullus lanatus HOM05D002709 ORTHO05D002914 3.8e-07 58.2 52 61.5
Eucgr.E04247 Eucalyptus grandis HOM05D002709 ORTHO05D002914 3.8e-07 58.2 70 51.4
HanXRQChr11g0344001 Helianthus annuus HOM05D002709 ORTHO05D002914 3.8e-07 58.2 71 47.9
Phvul.003G281300 Phaseolus vulgaris HOM05D002709 ORTHO05D002914 3.8e-07 58.2 56 58.9
Rhsim01G0134100 Rhododendron simsii HOM05D002709 ORTHO05D000001 3.8e-07 58.2 47 63.8
Sed0003196 Sechium edule HOM05D002709 ORTHO05D002914 3.8e-07 58.2 49 65.3
arahy.Tifrunner.gnm1.ann1.05VK9G Arachis hypogaea HOM05D002709 ORTHO05D002914 5.0e-07 57.8 47 66.0
arahy.Tifrunner.gnm1.ann1.P97QTY Arachis hypogaea HOM05D002709 ORTHO05D002914 5.0e-07 57.8 47 66.0
Haze_15816 Corylus avellana HOM05D002709 ORTHO05D002914 5.0e-07 57.8 54 61.1
ECA248G1803 Erigeron canadensis HOM05D002709 ORTHO05D002914 5.0e-07 57.8 72 45.8
Nn1g02001 Nelumbo nucifera HOM05D002709 ORTHO05D002914 5.0e-07 57.8 61 54.1
Duzib128G1731 Durio zibethinus HOM05D002709 ORTHO05D002914 8.5e-07 57.0 64 53.1
HanXRQChr16g0522691 Helianthus annuus HOM05D002709 ORTHO05D002914 8.5e-07 57.0 72 45.8
Atru.chr8.7 Acer truncatum HOM05D002709 ORTHO05D002914 1.1e-06 56.6 48 66.7
CiPaw.13G149600 Carya illinoinensis HOM05D002709 ORTHO05D002914 1.1e-06 56.6 54 61.1
CDE02G2384 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 1.1e-06 56.6 46 63.0
Nitab4.5_0000592g0300 Nicotiana tabacum HOM05D002709 ORTHO05D002914 1.1e-06 56.6 53 52.8
SalBow4G0764 Salvia bowleyana HOM05D002709 ORTHO05D002914 1.1e-06 56.6 47 59.6
SalBow4G2369 Salvia bowleyana HOM05D002709 ORTHO05D002914 1.1e-06 56.6 47 59.6
Lsat_1_v5_gn_1_85520 Lactuca sativa HOM05D002709 ORTHO05D002914 1.4e-06 56.2 47 59.6
Medtr4g094758 Medicago truncatula HOM05D002709 ORTHO05D002914 1.4e-06 56.2 46 67.4
Ca_18230_v3 Cicer arietinum L. HOM05D002709 ORTHO05D002914 1.9e-06 55.8 47 63.8
CDE11G0990 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 2.5e-06 55.5 46 63.0
Lalb_Chr09g0334541 Lupinus albus HOM05D002709 ORTHO05D002914 2.5e-06 55.5 52 59.6
arahy.Tifrunner.gnm1.ann1.1NS2SJ Arachis hypogaea HOM05D002709 ORTHO05D002914 3.2e-06 55.1 46 67.4
arahy.Tifrunner.gnm1.ann1.KVSP8M Arachis hypogaea HOM05D002709 ORTHO05D002914 3.2e-06 55.1 46 67.4
Zm00001eb251650 Zea mays HOM05D002709 ORTHO05D002914 3.2e-06 55.1 57 57.9
Ah.04g153250 Amaranthus hybridus HOM05D000417 ORTHO05D000342 4.2e-06 54.7 56 53.6
Psat7g087680 Pisum sativum HOM05D002709 ORTHO05D002914 4.2e-06 54.7 46 65.2
Aa31LG5G5710 Aethionema arabicum HOM05D002709 ORTHO05D002914 5.5e-06 54.3 57 52.6
CDE12G0280 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 5.5e-06 54.3 43 62.8
Ca_18228_v3 Cicer arietinum L. HOM05D002709 ORTHO05D002914 5.5e-06 54.3 47 61.7
SMO367G0040 Selaginella moellendorffii HOM05D002709 ORTHO05D002914 5.5e-06 54.3 53 54.7
ATR0829G155 Amborella trichopoda HOM05D002709 ORTHO05D002914 9.4e-06 53.5 51 56.9
CDE01G0783 Ceratophyllum demersum HOM05D002709 ORTHO05D002914 9.4e-06 53.5 43 62.8
Os04g0599300 Oryza sativa ssp. japonica HOM05D002709 ORTHO05D002914 9.4e-06 53.5 52 57.7
Rhsim01G0134800 Rhododendron simsii HOM05D002709 ORTHO05D002914 9.4e-06 53.5 43 65.1


User provided reference genes

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