Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.0e-94 350.1 182 100.0
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.9e-87 324.3 182 92.3
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 1.5e-85 319.7 172 96.5
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 3.2e-85 318.5 182 91.2
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 1.2e-84 316.6 192 87.5
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.0e-83 313.5 185 89.2
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 4.0e-83 311.6 185 89.2
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 7.5e-82 307.4 190 86.3
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 2.4e-80 302.4 185 85.9
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 3.1e-80 302.0 192 82.8
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 1.2e-79 300.1 185 84.9
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 5.9e-79 297.7 195 81.0
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 5.9e-79 297.7 195 81.0
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 5.9e-79 297.7 185 84.3
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 7.7e-79 297.4 181 86.2
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 8.5e-78 293.9 186 84.9
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 2.5e-77 292.4 196 79.6
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 3.2e-77 292.0 190 82.1
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 3.2e-77 292.0 190 82.1
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 7.2e-77 290.8 188 82.4
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.1e-76 289.3 182 85.2
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 6.1e-76 287.7 197 79.2
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 5.2e-75 284.6 188 80.9
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 6.8e-75 284.3 194 78.9
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 3.4e-74 282.0 198 79.3
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 4.4e-74 281.6 229 69.4
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.9e-70 268.9 188 79.3
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 1.1e-69 266.9 156 90.4
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 1.1e-69 266.9 156 90.4
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 1.1e-69 266.9 156 90.4
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 1.1e-69 266.9 156 90.4
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 1.1e-69 266.9 156 90.4
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 8.0e-68 260.8 182 78.0
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 4.0e-67 258.5 189 76.7
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.2e-65 252.7 182 76.4
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.1e-64 250.4 137 97.1
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.3e-59 232.6 131 93.1
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.3e-59 232.6 131 93.1
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 9.8e-58 227.3 132 91.7
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.1e-56 223.8 132 90.2
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.1e-56 223.8 132 90.2
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.1e-56 223.8 132 90.2
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 5.9e-55 218.0 132 86.4
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 1.1e-53 213.8 137 83.2
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 1.5e-53 213.4 169 70.4
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 4.3e-53 211.8 139 82.7
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-52 209.9 129 86.0
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 6.8e-51 204.5 132 82.6
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 9.8e-50 200.7 133 82.0
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 1.7e-49 199.9 121 87.6
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 1.7e-49 199.9 157 72.6
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 4.9e-49 198.4 141 75.9
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.3e-49 197.6 121 86.0
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.1e-48 197.2 131 81.7
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 4.1e-48 195.3 128 82.8
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.6e-47 193.4 133 78.2
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.6e-47 193.4 157 68.8
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-47 193.4 182 63.7
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 1.0e-46 190.7 118 84.7
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 5.0e-46 188.3 115 86.1
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 8.6e-46 187.6 126 77.8
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 3.3e-45 185.7 129 78.3
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 4.7e-44 181.8 124 77.4
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 5.2e-43 178.3 113 83.2
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 6.8e-43 177.9 116 82.8
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 6.8e-43 177.9 116 82.8
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 6.8e-43 177.9 116 82.8
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-42 177.2 106 87.7
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 5.8e-42 174.9 152 67.1
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.3e-41 171.0 112 82.1
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 1.4e-40 170.2 133 72.9
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 3.2e-40 169.1 108 83.3
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 3.2e-40 169.1 100 88.0
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 2.7e-39 166.0 96 87.5
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 7.8e-39 164.5 119 74.8
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 7.8e-39 164.5 145 66.9
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.5e-37 160.2 116 78.4
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 2.5e-37 159.5 92 87.0
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 5.6e-37 158.3 105 81.0
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 3.6e-36 155.6 95 89.5
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 3.6e-36 155.6 95 89.5
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.6e-36 155.6 130 68.5
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.6e-36 155.6 199 50.8
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.4e-35 153.7 89 87.6
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.8e-35 153.3 90 90.0
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 2.6e-34 149.4 156 60.3
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.2e-33 146.4 137 60.6
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.2e-33 146.4 137 60.6
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 3.8e-33 145.6 135 62.2
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.6e-30 134.8 101 72.3
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.6e-30 134.8 116 65.5
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 4.7e-28 128.6 84 79.8
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 8.1e-28 127.9 94 73.4
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 1.2e-26 124.0 73 87.7
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.9e-25 119.4 72 88.9
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 1.4e-24 117.1 90 72.2
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.2e-24 115.9 77 81.8
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 7.1e-24 114.8 80 77.5
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 9.3e-24 114.4 104 66.3
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.2e-23 114.0 76 81.6
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 6.0e-23 111.7 188 37.8
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.0e-22 110.9 71 85.9
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.5e-21 106.3 76 73.7
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 3.3e-21 105.9 71 78.9
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.3e-21 105.5 68 80.9
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 9.6e-21 104.4 66 80.3
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 2.1e-20 103.2 61 86.9
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 2.8e-20 102.8 61 85.2
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 4.0e-19 99.0 72 76.4
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.0e-19 99.0 72 75.0
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.9e-19 98.2 67 77.6
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 6.9e-19 98.2 49 95.9
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 3.4e-18 95.9 54 87.0
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 4.5e-18 95.5 49 91.8
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 9.9e-18 94.4 65 75.4
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-17 94.0 50 90.0
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 1.7e-17 93.6 54 90.7
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.7e-17 93.6 50 88.0
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.4e-17 91.3 50 90.0
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 1.1e-16 90.9 74 70.3
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.4e-16 89.7 51 90.2
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 9.3e-16 87.8 52 82.7
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.2e-15 87.4 46 89.1
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 3.5e-15 85.9 61 73.8
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 1.0e-14 84.3 48 85.4
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 6.7e-14 81.6 58 74.1
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 2.8e-12 76.3 52 75.0
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 4.8e-12 75.5 52 73.1
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 4.8e-12 75.5 64 64.1
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.1e-12 74.7 48 81.2
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 8.1e-12 74.7 48 81.2
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-10 70.9 38 89.5
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.2e-10 70.9 38 89.5
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.6e-10 69.7 41 82.9
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 4.5e-10 68.9 79 55.7
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 1.4e-08 63.9 41 82.9
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 2.4e-08 63.2 83 49.4
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 3.2e-08 62.8 66 54.5


User provided reference genes

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