Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 3.2e-153 545.0 273 100.0
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 2.7e-43 179.9 191 51.8
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 2.2e-29 133.7 267 40.1
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 2.2e-29 133.7 196 43.9
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 4.9e-29 132.5 271 36.2
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.1e-28 131.3 278 34.5
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 1.1e-28 131.3 278 34.5
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.9e-28 130.6 265 35.8
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.4e-28 130.2 265 35.8
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 1.2e-27 127.9 202 39.6
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.6e-27 127.5 278 34.2
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 1.0e-26 124.8 240 36.7
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.3e-26 124.4 198 38.4
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.3e-26 124.4 198 38.4
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 1.8e-26 124.0 192 39.6
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 6.7e-26 122.1 219 37.4
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.5e-25 120.9 195 37.9
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 1.5e-25 120.9 186 39.8
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 3.3e-25 119.8 228 35.1
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 4.3e-25 119.4 232 38.8
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 5.6e-25 119.0 192 39.6
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 7.4e-25 118.6 271 33.6
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 7.4e-25 118.6 207 38.6
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 1.3e-24 117.9 198 40.4
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.6e-24 117.5 202 38.6
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 1.6e-24 117.5 194 38.7
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 2.1e-24 117.1 253 35.6
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 2.8e-24 116.7 196 40.8
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 2.8e-24 116.7 205 41.5
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 4.8e-24 115.9 260 32.3
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.1e-23 114.8 270 31.9
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 1.4e-23 114.4 208 36.5
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.4e-23 114.4 254 35.0
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 1.4e-23 114.4 273 34.1
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.4e-23 114.4 237 34.6
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 1.8e-23 114.0 196 38.3
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 2.4e-23 113.6 190 36.3
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 3.1e-23 113.2 273 34.1
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 3.1e-23 113.2 266 32.0
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 4.0e-23 112.8 193 39.9
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 4.0e-23 112.8 193 36.3
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 6.9e-23 112.1 211 36.5
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 1.2e-22 111.3 214 35.5
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.5e-22 110.9 208 34.6
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 2.0e-22 110.5 199 36.2
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 2.0e-22 110.5 199 36.2
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 2.6e-22 110.2 277 30.7
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 3.4e-22 109.8 192 39.6
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 3.4e-22 109.8 192 40.1
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.4e-22 109.8 193 37.3
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 4.5e-22 109.4 215 35.3
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 5.8e-22 109.0 269 35.7
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 7.6e-22 108.6 220 33.6
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 1.0e-21 108.2 272 32.7
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 1.3e-21 107.8 205 34.1
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.3e-21 107.8 234 32.1
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.7e-21 107.5 216 36.6
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.2e-21 107.1 193 38.9
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 2.2e-21 107.1 203 34.0
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 2.9e-21 106.7 211 36.5
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 2.9e-21 106.7 265 30.2
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 8.4e-21 105.1 262 31.7
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.1e-20 104.8 190 34.7
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 1.1e-20 104.8 257 33.5
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 1.9e-20 104.0 203 33.5
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.9e-20 104.0 197 33.5
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 2.5e-20 103.6 188 36.7
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 4.6e-19 99.4 195 33.8
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 4.6e-19 99.4 191 35.1
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 6.0e-19 99.0 207 33.3
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 6.0e-19 99.0 197 34.0
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 6.0e-19 99.0 185 33.5
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.3e-18 97.8 248 32.3
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 2.3e-18 97.1 185 34.1
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 3.0e-18 96.7 197 32.5
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 3.9e-18 96.3 297 32.0
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 3.9e-18 96.3 297 32.0
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 3.9e-18 96.3 199 35.2
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 5.1e-18 95.9 195 34.9
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 5.1e-18 95.9 195 34.9
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 5.1e-18 95.9 260 29.2
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 5.1e-18 95.9 197 35.0
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 6.7e-18 95.5 199 32.7
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 6.7e-18 95.5 260 30.0
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 1.1e-17 94.7 188 35.1
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 1.1e-17 94.7 188 32.4
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 1.1e-17 94.7 205 32.2
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.5e-17 94.4 186 33.9
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 1.9e-17 94.0 194 34.0
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 2.5e-17 93.6 186 34.4
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 2.5e-17 93.6 189 33.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 3.3e-17 93.2 279 31.2
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 4.3e-17 92.8 192 33.9
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 5.7e-17 92.4 188 35.1
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 5.7e-17 92.4 189 31.7
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 5.7e-17 92.4 191 34.6
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 5.7e-17 92.4 186 34.4
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 7.4e-17 92.0 225 33.8
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 7.4e-17 92.0 198 32.8
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.3e-16 91.3 209 32.5
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.3e-16 91.3 259 30.5
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-16 90.9 197 33.0
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 1.6e-16 90.9 197 33.0
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.1e-16 90.5 209 32.5
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 2.1e-16 90.5 206 34.5
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 2.8e-16 90.1 214 30.4
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 3.7e-16 89.7 182 33.0
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 4.8e-16 89.4 192 32.8
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 4.8e-16 89.4 246 30.1
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 6.2e-16 89.0 197 32.5
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 6.2e-16 89.0 197 32.5
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.1e-15 88.2 192 30.7
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.4e-15 87.8 181 33.7
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 1.8e-15 87.4 190 33.2
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.4e-15 87.0 192 30.7
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 2.4e-15 87.0 192 30.7
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 3.1e-15 86.7 195 32.3
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 4.1e-15 86.3 192 31.8
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 6.9e-15 85.5 205 32.7
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 1.2e-14 84.7 205 34.1
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 1.5e-14 84.3 211 30.3
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 2.0e-14 84.0 194 32.0
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 2.0e-14 84.0 182 31.9
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 2.0e-14 84.0 191 29.8
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 2.0e-14 84.0 173 32.9
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 2.6e-14 83.6 194 35.1
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 2.6e-14 83.6 196 31.1
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 2.6e-14 83.6 157 34.4
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 3.4e-14 83.2 195 31.8
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 3.4e-14 83.2 194 33.5
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 3.4e-14 83.2 186 36.6
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 5.8e-14 82.4 190 34.2
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 5.8e-14 82.4 209 34.4
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.3e-13 81.3 194 31.4
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 1.3e-13 81.3 231 30.3
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 1.7e-13 80.9 169 33.1
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 1.7e-13 80.9 169 33.1
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.7e-13 80.9 157 33.8
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.0e-13 79.3 199 34.7
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 8.4e-13 78.6 200 30.0
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.1e-12 78.2 200 31.5
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.5e-12 77.0 194 27.3
SEGI_18442 Sequoiadendron giganteum HOM05D003268 ORTHO05D003719 2.5e-12 77.0 248 27.8
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.5e-12 77.0 192 34.9
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 3.2e-12 76.6 193 31.6
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 4.2e-12 76.3 191 31.4
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 4.2e-12 76.3 192 29.2
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 4.2e-12 76.3 192 29.2
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 4.2e-12 76.3 192 29.2
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 4.2e-12 76.3 186 30.6
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 7.1e-12 75.5 175 30.9
HanXRQChr07g0197201 Helianthus annuus HOM05D003268 ORTHO05D003719 7.1e-12 75.5 203 25.6
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 7.1e-12 75.5 197 36.0
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 9.3e-12 75.1 198 27.3
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 9.3e-12 75.1 161 31.7
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 1.6e-11 74.3 186 30.6
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 2.1e-11 73.9 191 31.9
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 4.6e-11 72.8 215 28.8
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 4.6e-11 72.8 196 30.1
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 4.6e-11 72.8 197 35.0
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 6.1e-11 72.4 197 35.0
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 6.1e-11 72.4 117 40.2
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.0e-10 71.6 193 30.6
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 1.3e-10 71.2 175 30.9
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 1.8e-10 70.9 199 28.6
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 5.1e-10 69.3 88 42.0
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 8.7e-10 68.6 110 35.5
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 1.1e-09 68.2 192 29.7
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 1.5e-09 67.8 164 31.7
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.9e-09 67.4 163 33.7
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 3.3e-09 66.6 163 33.1
AUR62006811 Chenopodium quinoa HOM05D003268 ORTHO05D003719 7.4e-09 65.5 69 52.2
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-08 64.3 193 27.5
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-08 64.3 184 29.9
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 1.6e-08 64.3 184 29.9
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 1.6e-08 64.3 184 28.3
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 8.2e-08 62.0 197 27.9
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 1.8e-07 60.8 189 29.6
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 6.9e-07 58.9 184 29.3
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.2e-06 58.2 159 30.2
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 2.0e-06 57.4 197 22.8
Dinv24510 Davidia involucrata HOM05D003268 ORTHO05D003719 2.0e-06 57.4 108 35.2
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 5.9e-06 55.8 216 26.4
Aa31LG1G5600 Aethionema arabicum HOM05D003268 ORTHO05D003719 7.7e-06 55.5 128 35.9


User provided reference genes

Program Settings