Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 5.2e-221 770.8 396 100.0
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 5.4e-85 318.9 504 44.6
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 3.5e-84 316.2 388 51.5
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 1.6e-81 307.4 487 43.5
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 8.1e-57 225.3 441 41.0
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 5.3e-32 142.9 442 31.4
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.0e-31 141.0 446 31.2
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 2.6e-31 140.6 452 33.8
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 4.5e-31 139.8 412 33.0
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 8.4e-30 135.6 409 30.1
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 2.5e-29 134.0 448 30.4
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 2.5e-26 124.0 439 31.0
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 5.7e-26 122.9 461 29.9
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 2.2e-25 120.9 411 29.2
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 2.2e-25 120.9 441 29.5
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 6.3e-25 119.4 467 28.1
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 6.3e-25 119.4 405 29.1
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 8.2e-25 119.0 444 26.8
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 1.8e-24 117.9 446 26.5
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 2.4e-24 117.5 394 31.7
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 9.0e-24 115.5 428 30.6
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 1.5e-23 114.8 409 30.3
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 2.0e-23 114.4 439 30.5
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 4.5e-23 113.2 439 30.3
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 3.8e-22 110.2 421 28.5
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 5.0e-22 109.8 439 30.1
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 8.5e-22 109.0 437 28.4
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 1.1e-21 108.6 438 29.2
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 1.9e-21 107.8 424 28.3
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 5.5e-21 106.3 431 30.9
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 1.2e-20 105.1 449 29.2
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 2.1e-20 104.4 414 30.0
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 2.1e-20 104.4 401 28.4
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.7e-20 104.0 423 28.4
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 4.6e-20 103.2 419 30.8
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 4.6e-20 103.2 446 27.4
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 1.0e-19 102.1 415 26.7
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 3.9e-19 100.1 148 44.6
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 5.1e-19 99.8 443 29.8
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 6.7e-19 99.4 405 29.4
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 1.5e-18 98.2 395 30.6
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.5e-18 98.2 306 31.0
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 2.5e-18 97.4 393 28.2
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 5.7e-18 96.3 417 28.1
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 7.4e-18 95.9 416 29.8
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 1.3e-17 95.1 339 28.9
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 1.3e-17 95.1 416 29.1
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.7e-17 94.7 420 26.0
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 1.7e-17 94.7 439 26.4
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 1.7e-17 94.7 335 31.0
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 2.2e-17 94.4 335 29.3
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 4.8e-17 93.2 423 28.4
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 6.3e-17 92.8 427 27.9
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 6.3e-17 92.8 336 30.1
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.4e-16 90.9 322 25.5
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 2.4e-16 90.9 406 29.6
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 4.1e-16 90.1 425 27.5
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 4.1e-16 90.1 409 27.6
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 6.9e-16 89.4 399 29.1
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 6.9e-16 89.4 467 26.8
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 1.2e-15 88.6 424 27.4
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 1.5e-15 88.2 383 26.4
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 7.7e-15 85.9 428 29.7
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 1.0e-14 85.5 415 26.7
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 1.0e-14 85.5 415 26.7
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 2.2e-14 84.3 419 24.8
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 2.2e-14 84.3 444 25.7
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 2.9e-14 84.0 319 27.0
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 3.8e-14 83.6 463 28.1
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 3.8e-14 83.6 427 27.6
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 5.0e-14 83.2 327 27.2
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 1.9e-13 81.3 446 27.8
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 4.2e-13 80.1 435 27.4
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 5.5e-13 79.7 425 27.3
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 5.5e-13 79.7 428 26.4
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 1.2e-12 78.6 430 27.9
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.2e-12 78.6 410 28.0
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 1.2e-12 78.6 454 26.2
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 1.6e-12 78.2 143 39.9
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 1.6e-12 78.2 298 29.9
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 1.6e-12 78.2 455 26.2
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 2.7e-12 77.4 427 25.5
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 7.9e-12 75.9 320 28.8
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 1.4e-11 75.1 398 27.1
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 3.9e-11 73.6 423 25.8
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 6.7e-11 72.8 336 27.1
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 8.8e-11 72.4 453 23.8
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 3.3e-10 70.5 149 38.3
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 3.3e-10 70.5 197 34.5
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 4.4e-10 70.1 408 25.2
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 5.7e-10 69.7 428 25.9
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 1.3e-09 68.6 466 26.6
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 1.3e-09 68.6 149 32.9
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 4.8e-09 66.6 316 28.8
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 8.2e-09 65.9 248 27.0
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 1.4e-08 65.1 99 36.4
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 2.4e-08 64.3 221 27.6
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 4.1e-08 63.5 290 25.2


User provided reference genes

Program Settings