Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g026550 Amaranthus hybridus HOM05D002225 ORTHO05D002271 2.9e-73 278.5 140 100.0
AUR62024935 Chenopodium quinoa HOM05D002225 ORTHO05D002271 5.4e-48 194.5 124 79.8
AUR62030609 Chenopodium quinoa HOM05D002225 ORTHO05D002271 7.1e-48 194.1 124 79.8
EL10Ac2g02646 Beta vulgaris HOM05D002225 ORTHO05D002271 1.2e-47 193.4 123 78.0
Hund15816 Selenicereus undatus HOM05D002225 ORTHO05D002271 7.6e-42 174.1 123 68.3
Sc11g0005850 Simmondsia chinensis HOM05D002225 ORTHO05D002271 1.2e-39 166.8 123 69.1
Dinv21847 Davidia involucrata HOM05D002225 ORTHO05D002271 3.4e-34 148.7 134 57.5
GSVIVG01032672001 Vitis vinifera HOM05D002225 ORTHO05D002271 3.4e-34 148.7 125 62.4
CSS0031158 Camellia sinensis var. sinensis HOM05D002225 ORTHO05D002271 1.4e-32 143.3 134 55.2
Dinv34486 Davidia involucrata HOM05D002225 ORTHO05D002271 1.2e-31 140.2 134 56.7
ClCG07G005120 Citrullus lanatus HOM05D002225 ORTHO05D002271 6.0e-31 137.9 132 55.3
Ca_16865_v3 Cicer arietinum L. HOM05D002225 ORTHO05D002271 1.3e-30 136.7 122 60.7
Ca_29952_v3 Cicer arietinum L. HOM05D002225 ORTHO05D002271 1.3e-30 136.7 122 60.7
Prupe.2G264200 Prunus persica HOM05D002225 ORTHO05D002271 1.8e-30 136.3 132 52.3
Actinidia31627 Actinidia chinensis HOM05D002225 ORTHO05D002271 3.0e-30 135.6 133 54.9
arahy.Tifrunner.gnm1.ann1.L24DBG Arachis hypogaea HOM05D002225 ORTHO05D002271 3.0e-30 135.6 133 57.1
Actinidia13647 Actinidia chinensis HOM05D002225 ORTHO05D002271 3.9e-30 135.2 133 53.4
arahy.Tifrunner.gnm1.ann1.4SU7B4 Arachis hypogaea HOM05D002225 ORTHO05D002271 5.1e-30 134.8 133 57.1
MD07G1233800 Malus domestica HOM05D002225 ORTHO05D002271 6.7e-30 134.4 135 54.1
TAR633G0281 Trochodendron aralioides HOM05D002225 ORTHO05D002271 1.9e-29 132.9 123 56.1
Glyma.06G142700 Glycine max HOM05D002225 ORTHO05D002271 5.6e-29 131.3 135 54.1
MELO3C018256.2 Cucumis melo HOM05D002225 ORTHO05D002271 7.4e-29 131.0 132 53.0
MD01G1167800 Malus domestica HOM05D002225 ORTHO05D002271 7.4e-29 131.0 133 51.9
Psat5g068760 Pisum sativum HOM05D002225 ORTHO05D002271 7.4e-29 131.0 132 53.0
RcHm_v2.0_Chr1g0372321 Rosa chinensis HOM05D002225 ORTHO05D002271 7.4e-29 131.0 128 56.2
CsaV3_3G044610 Cucumis sativus L. HOM05D002225 ORTHO05D002271 1.3e-28 130.2 120 56.7
Sed0009031 Sechium edule HOM05D002225 ORTHO05D002271 1.3e-28 130.2 130 52.3
Eucgr.J00112 Eucalyptus grandis HOM05D002225 ORTHO05D002271 2.8e-28 129.0 124 55.6
FvH4_7g25940 Fragaria vesca HOM05D002225 ORTHO05D002271 2.8e-28 129.0 129 55.0
FAN01G0750 Fragaria x ananassa HOM05D002225 ORTHO05D002271 2.8e-28 129.0 129 55.0
FAN03G1063 Fragaria x ananassa HOM05D002225 ORTHO05D002271 2.8e-28 129.0 129 55.0
FAN06G1908 Fragaria x ananassa HOM05D002225 ORTHO05D002271 2.8e-28 129.0 129 55.0
FAN10G3396 Fragaria x ananassa HOM05D002225 ORTHO05D002271 2.8e-28 129.0 129 55.0
QL08p064862 Quercus lobata HOM05D002225 ORTHO05D002271 4.8e-28 128.3 124 57.3
Glyma.04G222600 Glycine max HOM05D002225 ORTHO05D002271 6.2e-28 127.9 135 52.6
Hma1.2p1_0264F.1_g106150 Hydrangea macrophylla HOM05D002225 ORTHO05D002271 6.2e-28 127.9 124 54.8
CANSAT56G2293 Cannabis sativa HOM05D002225 ORTHO05D002271 8.1e-28 127.5 135 53.3
Lalb_Chr08g0239171 Lupinus albus HOM05D002225 ORTHO05D002271 8.1e-28 127.5 135 53.3
CsaV3_5G010960 Cucumis sativus L. HOM05D002225 ORTHO05D002271 1.4e-27 126.7 118 56.8
FAN03G2164 Fragaria x ananassa HOM05D002225 ORTHO05D002271 1.4e-27 126.7 129 54.3
Lj1g0007571 Lotus japonicus HOM05D002225 ORTHO05D002271 1.8e-27 126.3 132 52.3
Nn5g26846 Nelumbo nucifera HOM05D002225 ORTHO05D002271 1.8e-27 126.3 132 49.2
CiPaw.02G198900 Carya illinoinensis HOM05D002225 ORTHO05D002271 2.4e-27 125.9 143 54.5
TAR623G0431 Trochodendron aralioides HOM05D002225 ORTHO05D002271 2.4e-27 125.9 130 50.0
Cfa001208 Carpinus fangiana HOM05D002225 ORTHO05D002271 3.1e-27 125.6 110 61.8
Nn2g10301 Nelumbo nucifera HOM05D002225 ORTHO05D002271 3.1e-27 125.6 120 52.5
HanXRQChr07g0204131 Helianthus annuus HOM05D002225 ORTHO05D002271 5.3e-27 124.8 124 51.6
Haze_17358 Corylus avellana HOM05D002225 ORTHO05D002271 1.2e-26 123.6 110 60.0
HanXRQChr15g0493731 Helianthus annuus HOM05D002225 ORTHO05D002271 1.2e-26 123.6 136 48.5
Sabra19G0073700 Salix brachista HOM05D002225 ORTHO05D002271 3.4e-26 122.1 129 51.9
Aqoxy4G02423 Aquilegia oxysepala HOM05D002225 ORTHO05D002271 5.8e-26 121.3 129 54.3
Manes.10G001500 Manihot esculenta HOM05D002225 ORTHO05D002271 7.6e-26 120.9 98 63.3
Medtr3g093960 Medicago truncatula HOM05D002225 ORTHO05D002271 9.9e-26 120.6 134 53.0
PGSC0003DMG402011656 Solanum tuberosum HOM05D002225 ORTHO05D002271 1.3e-25 120.2 120 54.2
Rhsim03G0152200 Rhododendron simsii HOM05D002225 ORTHO05D002271 1.7e-25 119.8 109 54.1
Rhsim03G0152600 Rhododendron simsii HOM05D002225 ORTHO05D002271 1.7e-25 119.8 109 54.1
Potri.019G058300 Populus trichocarpa HOM05D002225 ORTHO05D002271 2.9e-25 119.0 98 63.3
vmacro06892 Vaccinium macrocarpon HOM05D002225 ORTHO05D002271 2.9e-25 119.0 112 52.7
Cpa.g.sc19.56 Carica papaya HOM05D002225 ORTHO05D002271 3.8e-25 118.6 122 56.6
VMungo1309G0791 Vigna mungo HOM05D002225 ORTHO05D002271 1.1e-24 117.1 136 50.0
PGR044G0456 Punica granatum HOM05D002225 ORTHO05D002271 1.9e-24 116.3 119 52.1
TPR.G16112 Trifolium pratense HOM05D002225 ORTHO05D002271 2.4e-24 115.9 138 50.0
VMungo1309G3021 Vigna mungo HOM05D002225 ORTHO05D002271 2.4e-24 115.9 136 50.0
Solyc05g052220.3 Solanum lycopersicum HOM05D002225 ORTHO05D002271 3.2e-24 115.5 120 52.5
Sopen05g030760 Solanum pennellii HOM05D002225 ORTHO05D002271 3.2e-24 115.5 120 52.5
MBI15_g01600_MAGBIO Magnolia biondii HOM05D002225 ORTHO05D002271 4.2e-24 115.2 124 49.2
Phvul.009G043900 Phaseolus vulgaris HOM05D002225 ORTHO05D002271 4.2e-24 115.2 133 51.9
CiPaw.01G306700 Carya illinoinensis HOM05D002225 ORTHO05D002271 7.1e-24 114.4 143 48.3
Lsat_1_v5_gn_2_126241 Lactuca sativa HOM05D002225 ORTHO05D002271 2.7e-23 112.5 105 55.2
COL.COLO4_19417 Corchorus olitorius HOM05D002225 ORTHO05D002271 3.5e-23 112.1 133 48.9
Peaxi162Scf00167g01215 Petunia axillaris HOM05D002225 ORTHO05D002271 4.6e-23 111.7 107 54.2
Gohir.A05G402900 Gossypium hirsutum HOM05D002225 ORTHO05D002271 7.9e-23 110.9 101 58.4
Lsat_1_v5_gn_9_60121 Lactuca sativa HOM05D002225 ORTHO05D002271 1.0e-22 110.5 125 48.8
TAR636G1271 Trochodendron aralioides HOM05D002225 ORTHO05D002271 1.8e-22 109.8 103 54.4
Duzib106G1786 Durio zibethinus HOM05D002225 ORTHO05D002271 1.1e-21 107.1 105 54.3
TWI53G0084 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 1.9e-21 106.3 141 46.1
Cc02_g05360 Coffea canephora HOM05D002225 ORTHO05D002271 5.6e-21 104.8 104 53.8
CDE12G0364 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 7.4e-21 104.4 123 42.3
PSO384G2911 Papaver somniferum HOM05D002225 ORTHO05D002271 7.4e-21 104.4 136 45.6
PSO339G3502 Papaver somniferum HOM05D002225 ORTHO05D002271 1.6e-20 103.2 136 46.3
Gohir.D04G012600 Gossypium hirsutum HOM05D002225 ORTHO05D002271 3.7e-20 102.1 98 57.1
Gorai.012G014900 Gossypium raimondii HOM05D002225 ORTHO05D002271 3.7e-20 102.1 98 57.1
Ciclev10031722m.g Citrus clementina HOM05D002225 ORTHO05D002271 6.2e-20 101.3 101 59.4
DCAR_018038 Daucus carota HOM05D002225 ORTHO05D002271 1.8e-19 99.8 100 55.0
Migut.F01243 Erythranthe guttata HOM05D002225 ORTHO05D002271 1.8e-19 99.8 124 46.0
CDE04G1638 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 4.0e-19 98.6 123 40.7
Gohir.A13G006400 Gossypium hirsutum HOM05D002225 ORTHO05D002271 4.0e-19 98.6 116 50.9
Gorai.013G006800 Gossypium raimondii HOM05D002225 ORTHO05D002271 9.0e-19 97.4 99 52.5
Atru.chr12.184 Acer truncatum HOM05D002225 ORTHO05D002271 1.2e-18 97.1 121 50.4
THA.LOC104816508 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 2.0e-18 96.3 117 46.2
ECA232G4636 Erigeron canadensis HOM05D002225 ORTHO05D002271 3.4e-18 95.5 98 48.0
TWI73G0482 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 2.9e-17 92.4 127 44.1
MSTRG.27259 Avicennia marina HOM05D002225 ORTHO05D002271 3.8e-17 92.0 82 58.5
SalBow5G4698 Salvia bowleyana HOM05D002225 ORTHO05D002271 6.5e-17 91.3 97 48.5
HPP92_000772 Vanilla planifolia HOM05D002225 ORTHO05D002271 1.4e-16 90.1 131 41.2
HPP92_026797 Vanilla planifolia HOM05D002225 ORTHO05D002271 1.4e-16 90.1 131 41.2
MSTRG.170 Avicennia marina HOM05D002225 ORTHO05D002271 1.9e-16 89.7 92 52.2
ECA238G4625 Erigeron canadensis HOM05D002225 ORTHO05D002271 1.9e-16 89.7 119 49.6
ATR1127G185 Amborella trichopoda HOM05D002225 ORTHO05D002271 2.5e-16 89.4 111 50.5
SGA_v2.0_scaffold160G37717 Striga asiatica HOM05D002225 ORTHO05D002271 3.2e-16 89.0 127 44.1
Oeu018735.1 Olea europaea HOM05D002225 ORTHO05D002271 7.1e-16 87.8 135 40.0
Aa31LG11G6080 Aethionema arabicum HOM05D002225 ORTHO05D002271 2.7e-15 85.9 105 47.6
Thhalv10013906m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 6.0e-15 84.7 121 43.8
THA.LOC104826871 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 7.9e-15 84.3 88 50.0
Thecc.10G179500 Theobroma cacao HOM05D002225 ORTHO05D002271 7.9e-15 84.3 100 49.0
unitig_736.g22956 Utricularia gibba HOM05D002225 ORTHO05D002271 7.9e-15 84.3 83 54.2
Lj8A54T71 Lonicera japonica HOM05D002225 ORTHO05D002271 1.8e-14 83.2 99 49.5
AT5G05230 Arabidopsis thaliana HOM05D002225 ORTHO05D002271 3.9e-14 82.0 90 51.1
SEGI_03327 Sequoiadendron giganteum HOM05D002225 ORTHO05D002271 3.9e-14 82.0 141 39.0
AL6G15070 Arabidopsis lyrata HOM05D002225 ORTHO05D002271 5.1e-14 81.6 90 51.1
C09p71470 Brassica napus HOM05D002225 ORTHO05D002271 1.1e-13 80.5 88 52.3
A10p30960 Brassica napus HOM05D002225 ORTHO05D002271 1.5e-13 80.1 109 45.0
BraA10t45141Z Brassica rapa HOM05D002225 ORTHO05D002271 1.5e-13 80.1 109 45.0
Carub.0006s0416 Capsella rubella HOM05D002225 ORTHO05D002271 1.9e-13 79.7 90 52.2
BcaC06g32232 Brassica carinata HOM05D002225 ORTHO05D002271 2.5e-13 79.3 88 52.3
BolC9t59910H Brassica oleracea HOM05D002225 ORTHO05D002271 2.5e-13 79.3 115 46.1
Gohir.D13G006600 Gossypium hirsutum HOM05D002225 ORTHO05D002271 2.5e-13 79.3 69 56.5
Sp6g37600 Schrenkiella parvula HOM05D002225 ORTHO05D002271 1.3e-12 77.0 85 52.9
THA.LOC104813586 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 8.2e-12 74.3 104 39.4
Aa31LG3G1480 Aethionema arabicum HOM05D002225 ORTHO05D002271 2.0e-10 69.7 88 45.5
Pp3c12_23350 Physcomitrium patens HOM05D002225 ORTHO05D002271 2.6e-10 69.3 95 46.3
AL4G38510 Arabidopsis lyrata HOM05D002225 ORTHO05D002271 1.7e-09 66.6 54 59.3
AT2G40640 Arabidopsis thaliana HOM05D002225 ORTHO05D002271 1.7e-09 66.6 54 57.4
Zm00001eb062220 Zea mays HOM05D002225 ORTHO05D002271 1.7e-09 66.6 62 51.6
CARHR135750 Cardamine hirsuta HOM05D002225 ORTHO05D002271 2.2e-09 66.2 139 31.7
Thhalv10003285m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 2.9e-09 65.9 46 65.2
Carub.0004s2293 Capsella rubella HOM05D002225 ORTHO05D002271 5.0e-09 65.1 127 31.5
Thhalv10016770m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 5.0e-09 65.1 128 31.2
Mapoly0009s0158 Marchantia polymorpha HOM05D002225 ORTHO05D002271 6.5e-09 64.7 114 39.5
BcaC01g05390 Brassica carinata HOM05D002225 ORTHO05D002271 8.5e-09 64.3 46 63.0
Nitab4.5_0002279g0020 Nicotiana tabacum HOM05D002225 ORTHO05D002271 1.1e-08 63.9 91 42.9
Os03g0816000 Oryza sativa ssp. japonica HOM05D002225 ORTHO05D002271 1.1e-08 63.9 110 36.4
CSS0028921 Camellia sinensis var. sinensis HOM05D002225 ORTHO05D002271 1.4e-08 63.5 99 37.4
A03p22850 Brassica napus HOM05D002225 ORTHO05D002271 2.5e-08 62.8 46 60.9
C03p27100 Brassica napus HOM05D002225 ORTHO05D002271 2.5e-08 62.8 46 60.9
Pp3c4_6540 Physcomitrium patens HOM05D002225 ORTHO05D002271 2.5e-08 62.8 95 41.1
Pp3c4_6562 Physcomitrium patens HOM05D002225 ORTHO05D002271 2.5e-08 62.8 95 41.1
SMO358G0236 Selaginella moellendorffii HOM05D002225 ORTHO05D002271 4.2e-08 62.0 60 48.3
BcaB01g03525 Brassica carinata HOM05D002225 ORTHO05D002271 5.5e-08 61.6 100 37.0
SMO142G0006 Selaginella moellendorffii HOM05D002225 ORTHO05D002271 9.3e-08 60.8 69 44.9
AagrBONN_evm.TU.Sc2ySwM_368.1356 Anthoceros agrestis HOM05D002225 ORTHO05D002271 2.7e-07 59.3 49 55.1
Sp4g22970 Schrenkiella parvula HOM05D002225 ORTHO05D002271 4.6e-07 58.5 136 30.1
AagrBONN_evm.TU.Sc2ySwM_228.3524 Anthoceros agrestis HOM05D002225 ORTHO05D002271 6.1e-07 58.2 84 42.9
arahy.Tifrunner.gnm1.ann1.X31W74 Arachis hypogaea HOM05D002225 ORTHO05D002271 7.9e-07 57.8 75 42.7
arahy.Tifrunner.gnm1.ann1.RAZH9U Arachis hypogaea HOM05D002225 ORTHO05D002271 1.0e-06 57.4 75 42.7
Nitab4.5_0000375g0260 Nicotiana tabacum HOM05D002225 ORTHO05D002271 3.0e-06 55.8 54 53.7
Rhsim09G0072600 Rhododendron simsii HOM05D002225 ORTHO05D002271 3.0e-06 55.8 70 40.0
Lj6A722G88 Lonicera japonica HOM05D002225 ORTHO05D002271 3.9e-06 55.5 47 51.1
AagrBONN_evm.TU.Sc2ySwM_344.429 Anthoceros agrestis HOM05D002225 ORTHO05D002271 5.1e-06 55.1 38 60.5
SalBow2G1711 Salvia bowleyana HOM05D002225 ORTHO05D002271 5.1e-06 55.1 40 57.5
Zm00001eb259400 Zea mays HOM05D002225 ORTHO05D002271 5.1e-06 55.1 37 56.8


User provided reference genes

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