Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g026470 Amaranthus hybridus HOM05D000004 ORTHO05D015283 6.2e-38 160.2 77 100.0
Ah.15g100080 Amaranthus hybridus HOM05D000004 ORTHO05D000002 2.4e-21 105.1 70 68.6
EL10As7g23739 Beta vulgaris HOM05D000004 ORTHO05D000002 5.0e-19 97.4 70 70.0
CSS0003422 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.5e-18 94.0 70 62.9
CSS0009919 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 7.2e-18 93.6 70 62.9
CSS0004339 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.1e-15 86.3 72 55.6
FvH4_1g23712 Fragaria vesca HOM05D000004 ORTHO05D000002 8.2e-14 80.1 72 51.4
FvH4_1g29809 Fragaria vesca HOM05D000004 ORTHO05D000002 1.1e-13 79.7 72 51.4
EL10As7g23735 Beta vulgaris HOM05D000004 ORTHO05D000002 1.8e-13 79.0 48 72.9
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 4.1e-13 77.8 70 50.0
FvH4_6g34501 Fragaria vesca HOM05D000004 ORTHO05D000002 6.9e-13 77.0 70 50.0
SHI23100 Sapria himalayana HOM05D000004 ORTHO05D000002 6.9e-13 77.0 65 55.4
Sopen02g011110 Solanum pennellii HOM05D000004 ORTHO05D000002 9.1e-13 76.6 69 50.7
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.2e-12 76.3 69 49.3
Sopen02g009190 Solanum pennellii HOM05D000004 ORTHO05D000002 1.2e-12 76.3 69 50.7
Ah.14g080150 Amaranthus hybridus HOM05D000004 ORTHO05D000002 1.5e-12 75.9 70 48.6
CSS0037139 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.5e-12 75.9 61 55.7
Sopen05g005120 Solanum pennellii HOM05D000004 ORTHO05D000002 1.5e-12 75.9 69 50.7
SHI35607 Sapria himalayana HOM05D000004 ORTHO05D000002 2.6e-12 75.1 70 51.4
Sopen02g010830 Solanum pennellii HOM05D000004 ORTHO05D000002 4.5e-12 74.3 69 49.3
Sopen02g008090 Solanum pennellii HOM05D000004 ORTHO05D000002 5.9e-12 73.9 69 49.3
SHI01351 Sapria himalayana HOM05D000049 ORTHO05D000027 7.7e-12 73.6 69 49.3
SHI14899 Sapria himalayana HOM05D000004 ORTHO05D000378 7.7e-12 73.6 70 50.0
Sopen10g014200 Solanum pennellii HOM05D000004 ORTHO05D000002 7.7e-12 73.6 69 49.3
Sopen02g009460 Solanum pennellii HOM05D000691 ORTHO05D000378 1.0e-11 73.2 69 49.3
RcHm_v2.0_Chr7g0200201 Rosa chinensis HOM05D000004 ORTHO05D000002 1.3e-11 72.8 69 43.5
CAN.G1226.33 Capsicum annuum HOM05D000004 ORTHO05D000002 1.7e-11 72.4 69 47.8
CAN.G1250.3 Capsicum annuum HOM05D000004 ORTHO05D000002 1.7e-11 72.4 69 47.8
CAN.G1445.1 Capsicum annuum HOM05D000004 ORTHO05D000002 1.7e-11 72.4 69 47.8
CAN.G55.5 Capsicum annuum HOM05D000004 ORTHO05D000002 1.7e-11 72.4 69 47.8
CAN.G801.8 Capsicum annuum HOM05D000004 ORTHO05D000002 1.7e-11 72.4 69 47.8
CAN.G890.31 Capsicum annuum HOM05D000004 ORTHO05D000002 2.2e-11 72.0 69 47.8
FvH4_2g35961 Fragaria vesca HOM05D000004 ORTHO05D000002 2.2e-11 72.0 69 43.5
Sopen09g014160 Solanum pennellii HOM05D000004 ORTHO05D000002 2.2e-11 72.0 68 47.1
CSS0040213 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.9e-11 71.6 69 46.4
SHI30396 Sapria himalayana HOM05D003769 ORTHO05D000002 2.9e-11 71.6 65 52.3
Sopen02g010300 Solanum pennellii HOM05D000004 ORTHO05D000002 2.9e-11 71.6 68 50.0
RcHm_v2.0_Chr4g0401341 Rosa chinensis HOM05D000004 ORTHO05D000002 3.8e-11 71.2 69 42.0
SHI25081 Sapria himalayana HOM05D000004 ORTHO05D000002 3.8e-11 71.2 56 55.4
Sopen05g011340 Solanum pennellii HOM05D000004 ORTHO05D000002 3.8e-11 71.2 68 47.1
Sopen06g016840 Solanum pennellii HOM05D000004 ORTHO05D000002 3.8e-11 71.2 69 46.4
ClCG10G007950 Citrullus lanatus HOM05D000004 ORTHO05D000002 5.0e-11 70.9 68 47.1
FvH4_4g13904 Fragaria vesca HOM05D000004 ORTHO05D000002 5.0e-11 70.9 69 43.5
Sopen02g006530 Solanum pennellii HOM05D000004 ORTHO05D000002 6.5e-11 70.5 69 46.4
Sopen02g006770 Solanum pennellii HOM05D000004 ORTHO05D000002 6.5e-11 70.5 66 48.5
PGSC0003DMG400000388 Solanum tuberosum HOM05D000004 ORTHO05D000002 6.5e-11 70.5 68 47.1
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 8.5e-11 70.1 68 47.1
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 8.5e-11 70.1 68 47.1
SHI22221 Sapria himalayana HOM05D000004 ORTHO05D000002 1.4e-10 69.3 62 46.8
Sopen06g011880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-10 69.3 69 46.4
Sopen12g011100 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-10 69.3 68 47.1
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 1.4e-10 69.3 68 45.6
THA.LOC104816062 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.4e-10 69.3 70 45.7
Sopen07g006750 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-10 68.9 68 45.6
Sopen04g009170 Solanum pennellii HOM05D000004 ORTHO05D000002 3.2e-10 68.2 69 46.4
Sopen12g008510 Solanum pennellii HOM05D000691 ORTHO05D000378 3.2e-10 68.2 68 44.1
Sopen07g013260 Solanum pennellii HOM05D000691 ORTHO05D000378 4.2e-10 67.8 68 45.6
Sopen10g017900 Solanum pennellii HOM05D000004 ORTHO05D000002 4.2e-10 67.8 69 46.4
Sopen10g020660 Solanum pennellii HOM05D000004 ORTHO05D000002 4.2e-10 67.8 68 45.6
Duzib132G0756 Durio zibethinus HOM05D000004 ORTHO05D000002 5.5e-10 67.4 60 46.7
Sopen01g021200 Solanum pennellii HOM05D000004 ORTHO05D000378 5.5e-10 67.4 69 43.5
ClCG08G000140 Citrullus lanatus HOM05D000004 ORTHO05D000002 7.2e-10 67.0 58 48.3
Rhsim10G0189700 Rhododendron simsii HOM05D000004 ORTHO05D000002 7.2e-10 67.0 72 54.2
Sopen01g024770 Solanum pennellii HOM05D000691 ORTHO05D000378 7.2e-10 67.0 68 42.6
Sopen02g010700 Solanum pennellii HOM05D000004 ORTHO05D000002 7.2e-10 67.0 68 45.6
Sopen05g011350 Solanum pennellii HOM05D000004 ORTHO05D000378 7.2e-10 67.0 68 45.6
Sopen08g004730 Solanum pennellii HOM05D000004 ORTHO05D000002 7.2e-10 67.0 62 48.4
CsaV3_1G028570 Cucumis sativus L. HOM05D000004 ORTHO05D000002 1.2e-09 66.2 56 50.0
CsaV3_5G023160 Cucumis sativus L. HOM05D001517 ORTHO05D001424 1.2e-09 66.2 56 50.0
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 1.2e-09 66.2 67 46.3
Sopen01g026700 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-09 65.9 68 42.6
Sopen10g015090 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-09 65.9 66 45.5
SEGI_15568 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.7e-09 65.1 69 44.9
Sopen07g009500 Solanum pennellii HOM05D001275 ORTHO05D001570 2.7e-09 65.1 69 43.5
COL.COLO4_07941 Corchorus olitorius HOM05D011008 ORTHO05D015283 3.6e-09 64.7 67 43.3
Sopen01g009130 Solanum pennellii HOM05D000691 ORTHO05D000378 3.6e-09 64.7 68 44.1
Sopen07g019030 Solanum pennellii HOM05D000691 ORTHO05D000378 3.6e-09 64.7 65 44.6
Sopen01g016830 Solanum pennellii HOM05D000691 ORTHO05D000378 4.6e-09 64.3 67 41.8
Sopen08g011270 Solanum pennellii HOM05D000004 ORTHO05D000002 4.6e-09 64.3 69 40.6
CSS0006424 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 6.1e-09 63.9 70 51.4
CSS0013920 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 6.1e-09 63.9 70 51.4
CSS0034382 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 6.1e-09 63.9 70 51.4
Sopen02g006790 Solanum pennellii HOM05D000004 ORTHO05D000002 6.1e-09 63.9 68 45.6
Sopen02g009180 Solanum pennellii HOM05D000004 ORTHO05D000002 7.9e-09 63.5 52 51.9
Sopen07g006770 Solanum pennellii HOM05D000004 ORTHO05D000002 7.9e-09 63.5 68 42.6
Sopen04g014740 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-08 62.8 68 41.2
Sopen11g024700 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-08 62.8 69 43.5
SHI15815 Sapria himalayana HOM05D000004 ORTHO05D000002 1.8e-08 62.4 53 50.9
SEGI_28366 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.3e-08 62.0 69 43.5
Sopen02g012140 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-08 62.0 69 44.9
CAN.G500.93 Capsicum annuum HOM05D000004 ORTHO05D000002 3.0e-08 61.6 52 50.0
Sopen07g006330 Solanum pennellii HOM05D000004 ORTHO05D000002 3.0e-08 61.6 50 52.0
SHI33645 Sapria himalayana HOM05D000004 ORTHO05D000002 3.9e-08 61.2 54 50.0
SEGI_34206 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 3.9e-08 61.2 69 40.6
Sopen02g011330 Solanum pennellii HOM05D000004 ORTHO05D008835 3.9e-08 61.2 63 41.3
Sopen05g012240 Solanum pennellii HOM05D000004 ORTHO05D000002 3.9e-08 61.2 68 41.2
CSS0009193 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.1e-08 60.8 70 48.6
COL.COLO4_06923 Corchorus olitorius HOM05D011008 ORTHO05D015283 8.8e-08 60.1 61 39.3
Manes.10G083832 Manihot esculenta HOM05D000004 ORTHO05D000002 8.8e-08 60.1 56 42.9
QL05p016549 Quercus lobata HOM05D000004 ORTHO05D000002 8.8e-08 60.1 72 47.2
Sopen02g009450 Solanum pennellii HOM05D000691 ORTHO05D000378 8.8e-08 60.1 48 52.1
QL01p005990 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-07 59.7 72 47.2
QL04p041450 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-07 59.7 72 47.2
QL05p055474 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-07 59.7 72 47.2
QL93p1800_0008 Quercus lobata HOM05D000004 ORTHO05D000002 1.1e-07 59.7 72 47.2
SEGI_21685 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.1e-07 59.7 69 43.5
Sopen02g010330 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-07 59.7 72 45.8
Sopen09g014170 Solanum pennellii HOM05D000691 ORTHO05D000378 1.1e-07 59.7 68 39.7
CSS0010412 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.5e-07 59.3 71 50.7
SEGI_06946 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.5e-07 59.3 69 42.0
EL10Ac9g20846 Beta vulgaris HOM05D000004 ORTHO05D000002 2.0e-07 58.9 72 47.2
Sopen01g024670 Solanum pennellii HOM05D000691 ORTHO05D000378 2.0e-07 58.9 68 45.6
Sopen07g008430 Solanum pennellii HOM05D000004 ORTHO05D000378 2.6e-07 58.5 62 45.2
SpUn0451_0010 Schrenkiella parvula HOM05D000004 ORTHO05D000002 3.3e-07 58.2 71 40.8
Sopen08g005590 Solanum pennellii HOM05D000004 ORTHO05D000002 3.3e-07 58.2 72 44.4
Sopen09g023470 Solanum pennellii HOM05D000004 ORTHO05D000002 3.3e-07 58.2 72 44.4
Sopen12g017890 Solanum pennellii HOM05D000004 ORTHO05D000002 3.3e-07 58.2 72 44.4
EL10Ac9g20976 Beta vulgaris HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 47.2
EL10Ac9g22405 Beta vulgaris HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 47.2
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 4.4e-07 57.8 69 37.7
Sopen02g012390 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen03g033370 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen04g020730 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen04g026810 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen05g012140 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen05g026540 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen05g029610 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 73 45.2
Sopen07g011130 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen07g017800 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen07g025250 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen08g015300 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 71 45.1
Sopen10g005990 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen12g024530 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-07 57.8 72 44.4
Sopen05g028570 Solanum pennellii HOM05D000004 ORTHO05D000002 5.7e-07 57.4 72 43.1
Sopen08g009610 Solanum pennellii HOM05D000004 ORTHO05D000002 5.7e-07 57.4 59 44.1
Sopen12g011680 Solanum pennellii HOM05D000004 ORTHO05D000002 5.7e-07 57.4 47 51.1
Sopen03g012390 Solanum pennellii HOM05D000004 ORTHO05D000002 7.4e-07 57.0 72 41.7
Sopen04g024190 Solanum pennellii HOM05D000004 ORTHO05D000002 7.4e-07 57.0 72 44.4
SHI27144 Sapria himalayana HOM05D000004 ORTHO05D000002 9.7e-07 56.6 49 51.0
SHI32724 Sapria himalayana HOM05D000004 ORTHO05D000002 9.7e-07 56.6 48 50.0
SEGI_08882 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 9.7e-07 56.6 70 35.7
Sopen03g024480 Solanum pennellii HOM05D000004 ORTHO05D000002 9.7e-07 56.6 67 41.8
Sopen06g004710 Solanum pennellii HOM05D000004 ORTHO05D000378 9.7e-07 56.6 69 40.6
Sopen11g019750 Solanum pennellii HOM05D000004 ORTHO05D000002 9.7e-07 56.6 74 41.9
Sopen01g011390 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-06 56.2 72 43.1
Sopen04g014160 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-06 56.2 72 44.4
Sopen10g018240 Solanum pennellii HOM05D000691 ORTHO05D000378 1.3e-06 56.2 68 39.7
Sopen11g013950 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-06 56.2 72 43.1
Sopen03g009560 Solanum pennellii HOM05D000004 ORTHO05D000002 1.7e-06 55.8 44 50.0
Sopen04g009050 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-06 55.8 68 36.8
Sopen04g016000 Solanum pennellii HOM05D000004 ORTHO05D000378 1.7e-06 55.8 41 53.7
Sp7g07390 Schrenkiella parvula HOM05D000004 ORTHO05D000002 2.2e-06 55.5 70 40.0
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 2.2e-06 55.5 54 50.0
Sopen07g006780 Solanum pennellii HOM05D000014 ORTHO05D000002 2.2e-06 55.5 48 50.0
Sopen01g009890 Solanum pennellii HOM05D000004 ORTHO05D000378 3.7e-06 54.7 59 44.1
Sopen05g023350 Solanum pennellii HOM05D000004 ORTHO05D000002 3.7e-06 54.7 72 41.7
Sopen09g009570 Solanum pennellii HOM05D000004 ORTHO05D000002 3.7e-06 54.7 71 43.7
EL10Ac7g17805 Beta vulgaris HOM05D004909 ORTHO05D009316 4.8e-06 54.3 72 43.1
Sopen03g025570 Solanum pennellii HOM05D000290 ORTHO05D007356 4.8e-06 54.3 72 41.7
Sopen05g009900 Solanum pennellii HOM05D000004 ORTHO05D000002 4.8e-06 54.3 71 42.3
Sopen08g009080 Solanum pennellii HOM05D000004 ORTHO05D000002 4.8e-06 54.3 72 43.1
Sopen10g017950 Solanum pennellii HOM05D000014 ORTHO05D000016 6.3e-06 53.9 71 40.8
Sopen09g025530 Solanum pennellii HOM05D000004 ORTHO05D000002 8.2e-06 53.5 66 45.5
Sopen11g021550 Solanum pennellii HOM05D000004 ORTHO05D000002 8.2e-06 53.5 72 43.1


User provided reference genes

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