Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g026240 Amaranthus hybridus HOM05D001358 ORTHO05D001154 1.1e-134 483.4 256 100.0
EL10Ac2g02597 Beta vulgaris HOM05D001358 ORTHO05D001154 1.7e-71 273.5 253 58.5
AUR62024885 Chenopodium quinoa HOM05D001358 ORTHO05D001154 1.7e-68 263.5 253 57.7
AUR62030662 Chenopodium quinoa HOM05D001358 ORTHO05D001154 3.0e-68 262.7 253 59.3
Hund25727 Selenicereus undatus HOM05D001358 ORTHO05D001154 3.5e-37 159.5 251 40.6
Thecc.09G149500 Theobroma cacao HOM05D001358 ORTHO05D001154 3.0e-28 129.8 252 39.7
COL.COLO4_23979 Corchorus olitorius HOM05D001358 ORTHO05D001154 9.0e-25 118.2 263 36.1
Sabra06G0196300 Salix brachista HOM05D001358 ORTHO05D001154 9.0e-25 118.2 252 34.5
Atru.chr7.2383 Acer truncatum HOM05D001358 ORTHO05D001154 1.2e-24 117.9 265 35.1
Gohir.A13G206800 Gossypium hirsutum HOM05D001358 ORTHO05D001154 2.0e-24 117.1 263 34.2
Dinv30170 Davidia involucrata HOM05D001358 ORTHO05D001154 2.6e-24 116.7 260 38.5
Gohir.D13G211400 Gossypium hirsutum HOM05D001358 ORTHO05D001154 4.5e-24 115.9 263 34.2
Gorai.013G241500 Gossypium raimondii HOM05D001358 ORTHO05D001154 4.5e-24 115.9 263 34.2
Duzib187G1050 Durio zibethinus HOM05D001358 ORTHO05D001154 1.0e-23 114.8 263 35.4
Hma1.2p1_0000F.1_g000630 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 2.2e-23 113.6 226 38.9
Gorai.013G110900 Gossypium raimondii HOM05D001358 ORTHO05D001154 1.9e-22 110.5 232 36.6
Potri.006G251200 Populus trichocarpa HOM05D001358 ORTHO05D001154 9.3e-22 108.2 256 33.2
GSVIVG01035818001 Vitis vinifera HOM05D001358 ORTHO05D001154 2.7e-21 106.7 256 33.6
QL02p022416 Quercus lobata HOM05D001358 ORTHO05D001154 3.5e-21 106.3 253 34.0
TAR625G0494 Trochodendron aralioides HOM05D001358 ORTHO05D001154 3.5e-21 106.3 258 34.5
MD08G1145800 Malus domestica HOM05D001358 ORTHO05D001154 4.6e-21 105.9 268 34.0
Cfa013173 Carpinus fangiana HOM05D001358 ORTHO05D001154 6.0e-21 105.5 259 33.2
MD15G1121200 Malus domestica HOM05D001358 ORTHO05D001154 7.9e-21 105.1 260 33.8
TWI34G1493 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 7.9e-21 105.1 258 34.1
Sc23g0006890 Simmondsia chinensis HOM05D001358 ORTHO05D001154 1.0e-20 104.8 237 35.0
Ciclev10007369m.g Citrus clementina HOM05D001358 ORTHO05D001154 6.7e-20 102.1 261 34.1
Gohir.D03G060612 Gossypium hirsutum HOM05D001358 ORTHO05D001154 1.1e-19 101.3 238 34.5
Nn8g39374 Nelumbo nucifera HOM05D001358 ORTHO05D001154 1.1e-19 101.3 237 33.3
FvH4_2g29570 Fragaria vesca HOM05D001358 ORTHO05D001154 1.5e-19 100.9 241 34.4
FAN20G1969 Fragaria x ananassa HOM05D001358 ORTHO05D001154 1.9e-19 100.5 249 35.3
FAN24G1377 Fragaria x ananassa HOM05D001358 ORTHO05D001154 1.9e-19 100.5 241 34.4
arahy.Tifrunner.gnm1.ann1.79SPSS Arachis hypogaea HOM05D001358 ORTHO05D001154 3.3e-19 99.8 250 33.2
RcHm_v2.0_Chr6g0298531 Rosa chinensis HOM05D001358 ORTHO05D001154 4.3e-19 99.4 244 35.2
Rhsim07G0147800 Rhododendron simsii HOM05D001358 ORTHO05D001154 1.3e-18 97.8 235 32.8
Lalb_Chr24g0402241 Lupinus albus HOM05D001358 ORTHO05D001154 2.2e-18 97.1 246 30.9
Prupe.1G473800 Prunus persica HOM05D001358 ORTHO05D001154 4.8e-18 95.9 251 32.7
Aqoxy7G03750 Aquilegia oxysepala HOM05D001358 ORTHO05D001154 6.3e-18 95.5 261 33.0
Glyma.17G208500 Glycine max HOM05D001358 ORTHO05D001154 8.2e-18 95.1 257 31.5
Gohir.A02G112600 Gossypium hirsutum HOM05D001358 ORTHO05D001154 8.2e-18 95.1 226 35.8
Manes.16G119900 Manihot esculenta HOM05D001358 ORTHO05D001154 1.1e-17 94.7 263 31.2
arahy.Tifrunner.gnm1.ann1.B88PIA Arachis hypogaea HOM05D001358 ORTHO05D001154 1.4e-17 94.4 243 32.5
Nn2g11942 Nelumbo nucifera HOM05D001358 ORTHO05D001154 3.1e-17 93.2 267 34.1
CDE01G0456 Ceratophyllum demersum HOM05D001358 ORTHO05D001154 6.9e-17 92.0 265 32.5
vmacro05192 Vaccinium macrocarpon HOM05D001358 ORTHO05D001154 9.0e-17 91.7 239 30.5
CAN.G98.30 Capsicum annuum HOM05D001358 ORTHO05D001154 1.5e-16 90.9 254 31.1
PGR044G1345 Punica granatum HOM05D001358 ORTHO05D001154 1.5e-16 90.9 257 33.9
CSS0023252 Camellia sinensis var. sinensis HOM05D001358 ORTHO05D001154 3.4e-16 89.7 259 34.4
Oeu030207.1 Olea europaea HOM05D001358 ORTHO05D001154 3.4e-16 89.7 240 33.3
FAN15G0716 Fragaria x ananassa HOM05D001358 ORTHO05D001154 4.5e-16 89.4 251 35.1
Dinv11622 Davidia involucrata HOM05D001358 ORTHO05D001154 7.7e-16 88.6 222 35.1
TPR.G15672 Trifolium pratense HOM05D001358 ORTHO05D001154 7.7e-16 88.6 240 30.8
Haze_21558 Corylus avellana HOM05D001358 ORTHO05D001154 1.3e-15 87.8 263 31.9
Nitab4.5_0009006g0010 Nicotiana tabacum HOM05D001358 ORTHO05D001154 1.7e-15 87.4 239 33.9
Ca_12933_v3 Cicer arietinum L. HOM05D001358 ORTHO05D001154 2.9e-15 86.7 242 31.8
Nitab4.5_0000151g0130 Nicotiana tabacum HOM05D001358 ORTHO05D001154 5.0e-15 85.9 250 33.2
TAR383G1052 Trochodendron aralioides HOM05D001358 ORTHO05D001154 1.1e-14 84.7 265 30.2
Eucgr.C02811 Eucalyptus grandis HOM05D001358 ORTHO05D001154 1.4e-14 84.3 275 31.6
Duzib150G0799 Durio zibethinus HOM05D001358 ORTHO05D001154 1.9e-14 84.0 257 31.9
Manes.04G117200 Manihot esculenta HOM05D001358 ORTHO05D001154 1.9e-14 84.0 182 37.4
TWI32G0159 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 1.9e-14 84.0 260 31.5
Lj5g0003410 Lotus japonicus HOM05D001358 ORTHO05D001154 4.2e-14 82.8 234 29.9
Medtr1g012020 Medicago truncatula HOM05D001358 ORTHO05D001154 7.2e-14 82.0 225 33.3
Psat6g029800 Pisum sativum HOM05D001358 ORTHO05D001154 9.4e-14 81.6 226 31.9
Oeu020098.1 Olea europaea HOM05D001358 ORTHO05D001154 1.2e-13 81.3 242 30.6
Migut.E01471 Erythranthe guttata HOM05D001358 ORTHO05D001154 1.6e-13 80.9 235 31.1
Cpa.g.sc115.16 Carica papaya HOM05D001358 ORTHO05D001154 2.1e-13 80.5 114 47.4
Cc11_g01890 Coffea canephora HOM05D001358 ORTHO05D001154 4.6e-13 79.3 276 32.2
Peaxi162Scf00341g00027 Petunia axillaris HOM05D001358 ORTHO05D001154 4.6e-13 79.3 246 29.7
Potri.018G030000 Populus trichocarpa HOM05D001358 ORTHO05D001154 3.0e-12 76.6 252 30.6
PSO170G0612 Papaver somniferum HOM05D001358 ORTHO05D001154 1.5e-11 74.3 267 28.1
Actinidia15685 Actinidia chinensis HOM05D001358 ORTHO05D001154 2.5e-11 73.6 224 30.4
PGSC0003DMG400023147 Solanum tuberosum HOM05D001358 ORTHO05D001154 9.7e-11 71.6 100 46.0
Sabra18G0031800 Salix brachista HOM05D001358 ORTHO05D001154 1.3e-10 71.2 190 32.6
Lsat_1_v5_gn_5_31600 Lactuca sativa HOM05D001358 ORTHO05D001154 4.8e-10 69.3 82 46.3
Solyc08g067150.4 Solanum lycopersicum HOM05D001358 ORTHO05D001154 4.8e-10 69.3 103 43.7
Atru.chr1.3107 Acer truncatum HOM05D001358 ORTHO05D001154 8.2e-10 68.6 153 35.3
SGA_v2.0_scaffold169G38612 Striga asiatica HOM05D001358 ORTHO05D001154 8.2e-10 68.6 87 43.7
CDE03G0048 Ceratophyllum demersum HOM05D001358 ORTHO05D001154 1.4e-09 67.8 211 30.3
FAN05G3742 Fragaria x ananassa HOM05D001358 ORTHO05D001154 1.4e-09 67.8 154 37.0
PSO455G0156 Papaver somniferum HOM05D001358 ORTHO05D001154 1.4e-09 67.8 259 26.6
SEGI_26140 Sequoiadendron giganteum HOM05D001358 ORTHO05D001154 1.8e-09 67.4 278 29.1
ECA246G3351 Erigeron canadensis HOM05D001358 ORTHO05D001154 4.1e-09 66.2 243 26.3
MBI04_g10415_MAGBIO Magnolia biondii HOM05D001358 ORTHO05D001154 4.1e-09 66.2 255 28.6
Prupe.3G078800 Prunus persica HOM05D001358 ORTHO05D001154 4.1e-09 66.2 114 42.1
Sopen08g021070 Solanum pennellii HOM05D001358 ORTHO05D001154 4.1e-09 66.2 256 32.0
MSTRG.25850 Avicennia marina HOM05D001358 ORTHO05D001154 1.2e-08 64.7 243 28.8
Peaxi162Scf00520g00614 Petunia axillaris HOM05D001358 ORTHO05D001154 2.0e-08 63.9 80 42.5
QL05p027578 Quercus lobata HOM05D001358 ORTHO05D001154 2.0e-08 63.9 151 35.8
FvH4_6g30420 Fragaria vesca HOM05D001358 ORTHO05D001154 3.4e-08 63.2 153 35.9
FAN14G5711 Fragaria x ananassa HOM05D001358 ORTHO05D001154 3.4e-08 63.2 153 35.9
PGR142G0675 Punica granatum HOM05D001358 ORTHO05D001154 5.9e-08 62.4 119 33.6
Potri.001G173600 Populus trichocarpa HOM05D001358 ORTHO05D001154 7.7e-08 62.0 222 30.2
THA.LOC104799223 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 7.7e-08 62.0 238 29.4
Actinidia18534 Actinidia chinensis HOM05D001358 ORTHO05D001154 1.3e-07 61.2 127 36.2
Eucgr.B01031 Eucalyptus grandis HOM05D001358 ORTHO05D001154 1.3e-07 61.2 60 50.0
TAR362G0329 Trochodendron aralioides HOM05D001358 ORTHO05D001154 1.7e-07 60.8 121 40.5
Hma1.2p1_0549F.1_g176810 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 2.2e-07 60.5 60 46.7
RcHm_v2.0_Chr2g0136761 Rosa chinensis HOM05D001358 ORTHO05D001154 2.2e-07 60.5 154 36.4
Ciclev10004441m.g Citrus clementina HOM05D001358 ORTHO05D001154 2.9e-07 60.1 60 48.3
FAN09G0345 Fragaria x ananassa HOM05D001358 ORTHO05D001154 2.9e-07 60.1 145 35.9
TWI12G0268 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 2.9e-07 60.1 135 37.8
Gohir.A02G033800 Gossypium hirsutum HOM05D001358 ORTHO05D001154 3.8e-07 59.7 60 50.0
Gorai.005G044800 Gossypium raimondii HOM05D001358 ORTHO05D001154 3.8e-07 59.7 60 50.0
HPP92_021807 Vanilla planifolia HOM05D001358 ORTHO05D001154 3.8e-07 59.7 115 33.0
Duzib212G0525 Durio zibethinus HOM05D001358 ORTHO05D001154 5.0e-07 59.3 61 47.5
FAN02G1631 Fragaria x ananassa HOM05D001358 ORTHO05D001154 5.0e-07 59.3 143 35.7
Nn6g34134 Nelumbo nucifera HOM05D001358 ORTHO05D001154 6.5e-07 58.9 176 31.2
Solyc09g082500.4 Solanum lycopersicum HOM05D001358 ORTHO05D001154 6.5e-07 58.9 62 46.8
Sopen09g031360 Solanum pennellii HOM05D001358 ORTHO05D001154 6.5e-07 58.9 62 46.8
Actinidia40126 Actinidia chinensis HOM05D001358 ORTHO05D001154 8.5e-07 58.5 59 45.8
Duzib151G0531 Durio zibethinus HOM05D001358 ORTHO05D001154 8.5e-07 58.5 60 48.3
SGA_v2.0_scaffold4G02183 Striga asiatica HOM05D001358 ORTHO05D001154 8.5e-07 58.5 80 42.5
Actinidia08472 Actinidia chinensis HOM05D001358 ORTHO05D001154 1.1e-06 58.2 63 47.6
Gohir.D02G040400 Gossypium hirsutum HOM05D001358 ORTHO05D001154 1.1e-06 58.2 60 48.3
Lj6C610G1 Lonicera japonica HOM05D001358 ORTHO05D001154 1.1e-06 58.2 60 48.3
Sabra08G0118900 Salix brachista HOM05D001358 ORTHO05D001154 1.4e-06 57.8 60 45.0
GSVIVG01018021001 Vitis vinifera HOM05D001358 ORTHO05D001154 1.4e-06 57.8 61 49.2
Atru.chr4.2387 Acer truncatum HOM05D001358 ORTHO05D001154 1.9e-06 57.4 60 46.7
Atru.chr4.2410 Acer truncatum HOM05D001358 ORTHO05D001154 1.9e-06 57.4 60 46.7
CAN.G1402.8 Capsicum annuum HOM05D001358 ORTHO05D001154 1.9e-06 57.4 62 45.2
Cc03_g04130 Coffea canephora HOM05D001358 ORTHO05D001154 1.9e-06 57.4 60 43.3
Potri.010G083400 Populus trichocarpa HOM05D001358 ORTHO05D001154 1.9e-06 57.4 59 47.5
PGSC0003DMG400032257 Solanum tuberosum HOM05D001358 ORTHO05D001154 1.9e-06 57.4 62 45.2
Hund12096 Selenicereus undatus HOM05D001358 ORTHO05D001154 2.5e-06 57.0 59 47.5
CiPaw.02G122500 Carya illinoinensis HOM05D001358 ORTHO05D001154 3.2e-06 56.6 60 45.0
Dinv11533 Davidia involucrata HOM05D001358 ORTHO05D001154 3.2e-06 56.6 74 37.8
QL06p001413 Quercus lobata HOM05D001358 ORTHO05D001154 3.2e-06 56.6 61 45.9
Sc13g0004620 Simmondsia chinensis HOM05D001358 ORTHO05D001154 3.2e-06 56.6 59 49.2
TWI09G1240 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 3.2e-06 56.6 62 48.4
Cfa008460 Carpinus fangiana HOM05D001358 ORTHO05D001154 4.2e-06 56.2 60 45.0
Nitab4.5_0002406g0010 Nicotiana tabacum HOM05D001358 ORTHO05D001154 4.2e-06 56.2 70 42.9
Thecc.04G236400 Theobroma cacao HOM05D001358 ORTHO05D001154 4.2e-06 56.2 60 46.7
Aqoxy2G03440 Aquilegia oxysepala HOM05D001358 ORTHO05D001154 5.5e-06 55.8 59 42.4
CiPaw.01G197300 Carya illinoinensis HOM05D001358 ORTHO05D001154 5.5e-06 55.8 60 46.7
Haze_11214 Corylus avellana HOM05D001358 ORTHO05D001154 5.5e-06 55.8 60 45.0
TWI53G1527 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 5.5e-06 55.8 62 46.8
CSS0000128 Camellia sinensis var. sinensis HOM05D001358 ORTHO05D001154 7.2e-06 55.5 60 43.3
Nn1g02402 Nelumbo nucifera HOM05D001358 ORTHO05D001154 9.4e-06 55.1 120 35.8
Sc19g0004020 Simmondsia chinensis HOM05D001358 ORTHO05D001154 9.4e-06 55.1 59 49.2
TPR.G37873 Trifolium pratense HOM05D001358 ORTHO05D001154 9.4e-06 55.1 60 45.0


User provided reference genes

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