Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 7.6e-153 543.9 293 100.0
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.1e-124 450.3 293 82.9
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.7e-120 436.4 293 79.9
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 9.1e-114 414.1 293 77.1
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.5e-103 380.2 293 71.0
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 5.5e-103 378.3 372 59.7
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 3.0e-101 372.5 295 70.5
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.5e-100 370.2 295 69.5
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.3e-99 367.1 295 69.2
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 1.7e-99 366.7 298 68.8
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.1e-98 364.0 296 67.9
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.0e-96 357.5 281 69.4
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 2.9e-96 355.9 294 67.7
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 2.9e-96 355.9 295 69.2
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 3.3e-95 352.4 296 66.6
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 4.2e-95 352.1 295 66.8
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 5.5e-95 351.7 294 66.7
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.2e-94 350.5 296 66.6
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.1e-94 349.7 295 66.4
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 5.2e-93 345.1 297 65.3
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 6.8e-93 344.7 294 65.3
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 6.8e-93 344.7 269 69.1
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.5e-92 343.6 299 66.2
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 3.4e-92 342.4 294 66.0
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.4e-92 342.0 295 66.1
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 7.5e-92 341.3 301 64.8
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 7.5e-92 341.3 295 65.4
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 7.5e-92 341.3 295 65.4
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 7.5e-92 341.3 295 65.4
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 9.8e-92 340.9 294 64.3
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.3e-91 340.5 296 64.2
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.3e-91 340.5 295 65.8
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.7e-91 340.1 295 65.1
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.2e-91 339.7 295 65.8
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 2.8e-91 339.3 299 65.2
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.8e-91 339.3 258 71.7
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.8e-91 339.3 295 65.8
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.7e-91 339.0 295 65.4
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 8.3e-91 337.8 295 64.4
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 1.1e-90 337.4 295 65.1
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 2.4e-90 336.3 294 64.6
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 3.1e-90 335.9 306 64.4
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 5.4e-90 335.1 294 65.6
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 5.4e-90 335.1 268 68.7
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 7.0e-90 334.7 293 64.5
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 9.2e-90 334.3 311 61.4
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.7e-89 332.8 297 63.3
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 4.5e-89 332.0 297 63.6
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 7.8e-89 331.3 283 65.0
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.7e-88 330.1 297 63.0
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 2.9e-88 329.3 295 63.4
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 5.0e-88 328.6 298 62.1
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.1e-87 327.4 329 58.4
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.5e-87 327.0 271 67.2
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.9e-87 326.6 296 62.5
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 3.3e-87 325.9 296 63.2
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.2e-86 323.9 303 63.4
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 3.6e-86 322.4 301 62.1
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 8.0e-86 321.2 260 68.1
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 1.4e-85 320.5 298 62.8
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 2.0e-84 316.6 302 59.6
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 2.6e-84 316.2 295 62.7
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 7.5e-84 314.7 305 61.0
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 7.5e-84 314.7 296 61.1
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 9.8e-84 314.3 325 57.8
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 9.8e-84 314.3 296 62.8
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.3e-83 313.9 294 60.5
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 2.2e-83 313.2 303 61.1
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 2.2e-83 313.2 296 61.5
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 2.2e-83 313.2 296 61.5
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 3.7e-83 312.4 293 61.4
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 3.7e-83 312.4 293 61.4
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.1e-82 310.8 293 61.1
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.1e-82 310.8 294 61.2
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.4e-82 310.5 254 67.3
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 5.4e-82 308.5 269 63.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 9.2e-82 307.8 251 66.1
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.6e-81 307.0 298 60.1
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 2.0e-81 306.6 295 59.0
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 3.5e-81 305.8 386 50.3
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 4.6e-81 305.4 259 63.3
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 1.7e-80 303.5 251 64.1
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 3.9e-80 302.4 303 59.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 5.0e-80 302.0 267 63.3
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 6.6e-80 301.6 360 52.5
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 8.6e-80 301.2 294 59.5
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 5.6e-79 298.5 295 60.3
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 5.6e-79 298.5 321 56.4
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 7.3e-79 298.1 295 60.3
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 6.2e-78 295.0 388 49.0
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.1e-77 294.3 295 58.0
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 6.8e-77 291.6 295 57.6
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.5e-76 290.4 213 74.6
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.0e-76 290.0 250 62.4
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 3.4e-76 289.3 310 55.5
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 5.8e-76 288.5 294 57.5
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 7.5e-76 288.1 303 58.4
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 9.8e-76 287.7 294 57.5
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 4.1e-74 282.3 257 61.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.3e-72 277.3 300 58.0
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.7e-72 276.9 296 57.8
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 8.9e-69 264.6 298 55.7
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 2.0e-68 263.5 219 67.1
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 8.3e-67 258.1 238 63.0
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.4e-66 257.3 199 73.9
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 4.1e-66 255.8 290 53.8
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 7.1e-66 255.0 249 57.8
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 3.4e-60 236.1 214 62.6
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 7.1e-58 228.4 186 71.0
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.2e-57 227.6 298 51.3
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.9e-55 220.3 174 68.4
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.1e-54 216.9 304 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 6.4e-51 205.3 242 47.1
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 1.4e-50 204.1 242 46.7
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.2e-49 201.1 251 48.2
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.3e-48 197.6 143 78.3
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 4.3e-47 192.6 183 60.1
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 7.6e-44 181.8 273 43.6
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.7e-43 180.6 220 45.0
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.1e-42 177.9 141 70.2
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.4e-42 176.8 242 42.1
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 4.0e-37 159.5 162 54.9
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.1e-34 151.4 230 42.2
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 3.3e-31 139.8 180 52.2
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.3e-30 137.9 224 39.3
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 6.2e-30 135.6 130 57.7
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.3e-27 127.9 119 61.3
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.3e-27 127.9 122 61.5
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.7e-27 127.5 80 85.0
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 2.7e-25 120.2 174 44.8
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 5.1e-24 115.9 130 48.5
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 8.7e-24 115.2 118 50.8
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.3e-19 101.3 105 50.5
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.3e-19 101.3 105 50.5
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 1.9e-18 97.4 105 49.5
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.4e-16 91.3 105 51.4
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 6.9e-13 79.0 62 62.9
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 5.0e-11 72.8 197 28.4
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 1.6e-09 67.8 205 31.7
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 2.3e-08 63.9 49 63.3
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 2.3e-08 63.9 49 63.3
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 2.3e-08 63.9 49 63.3
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 2.3e-08 63.9 49 63.3
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 6.3e-06 55.8 170 32.4


User provided reference genes

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