Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g025820 Amaranthus hybridus HOM05D007522 ORTHO05D009518 1.1e-81 306.6 163 100.0
AUR62032367 Chenopodium quinoa HOM05D007522 ORTHO05D009518 4.4e-49 198.4 142 77.5
EL10Ac2g02553 Beta vulgaris HOM05D007522 ORTHO05D009518 7.4e-49 197.6 162 68.5
Carub.0007s0799 Capsella rubella HOM05D007522 ORTHO05D009518 6.3e-40 167.9 154 59.1
COL.COLO4_24044 Corchorus olitorius HOM05D007522 ORTHO05D009518 4.1e-39 165.2 159 58.5
Aa31LG4G11730 Aethionema arabicum HOM05D007522 ORTHO05D009518 5.3e-39 164.9 159 57.2
CSS0007980 Camellia sinensis var. sinensis HOM05D007522 ORTHO05D009518 5.3e-39 164.9 159 55.3
AT4G32560 Arabidopsis thaliana HOM05D007522 ORTHO05D009518 1.6e-38 163.3 154 59.1
Sp7g30340 Schrenkiella parvula HOM05D007522 ORTHO05D009518 1.6e-38 163.3 159 57.2
AL7G19200 Arabidopsis lyrata HOM05D007522 ORTHO05D009518 2.7e-38 162.5 160 55.6
BraA01t00551Z Brassica rapa HOM05D007522 ORTHO05D009518 3.5e-38 162.2 153 60.8
BcaC09g52047 Brassica carinata HOM05D007522 ORTHO05D009518 5.9e-38 161.4 158 58.2
A01p05830 Brassica napus HOM05D007522 ORTHO05D009518 7.7e-38 161.0 153 60.8
Gohir.D13G209500 Gossypium hirsutum HOM05D007522 ORTHO05D009518 1.7e-37 159.8 162 54.9
Duzib187G1360 Durio zibethinus HOM05D007522 ORTHO05D009518 2.9e-37 159.1 159 55.3
C01p06400 Brassica napus HOM05D007522 ORTHO05D009518 3.8e-37 158.7 158 58.2
BolC1t00636H Brassica oleracea HOM05D007522 ORTHO05D009518 3.8e-37 158.7 158 58.2
Gohir.A13G204200 Gossypium hirsutum HOM05D007522 ORTHO05D009518 6.5e-37 157.9 162 54.3
Thecc.09G145600 Theobroma cacao HOM05D007522 ORTHO05D009518 6.5e-37 157.9 159 56.6
Actinidia13430 Actinidia chinensis HOM05D007522 ORTHO05D009518 1.1e-36 157.1 144 61.1
Gorai.013G238600 Gossypium raimondii HOM05D007522 ORTHO05D009518 1.5e-36 156.8 162 54.3
Thhalv10025779m.g Eutrema salsugineum HOM05D007522 ORTHO05D009518 2.5e-36 156.0 159 54.7
CARHR240530 Cardamine hirsuta HOM05D007522 ORTHO05D009518 5.5e-36 154.8 159 55.3
Cc11_g01290 Coffea canephora HOM05D007522 ORTHO05D009518 7.2e-36 154.5 159 53.5
Sed0015375 Sechium edule HOM05D007522 ORTHO05D009518 1.2e-35 153.7 153 56.2
Eucgr.C02854 Eucalyptus grandis HOM05D007522 ORTHO05D009518 1.6e-35 153.3 148 58.1
TAR383G0977 Trochodendron aralioides HOM05D007522 ORTHO05D009518 2.1e-35 152.9 154 56.5
PGR044G0714 Punica granatum HOM05D007522 ORTHO05D009518 2.7e-35 152.5 163 55.8
QL12p031480 Quercus lobata HOM05D007522 ORTHO05D009518 2.7e-35 152.5 162 54.9
Eucgr.C02843 Eucalyptus grandis HOM05D007522 ORTHO05D009518 4.7e-35 151.8 149 57.7
Rhsim02G0189000 Rhododendron simsii HOM05D007522 ORTHO05D009518 1.0e-34 150.6 146 57.5
Eucgr.C02839 Eucalyptus grandis HOM05D007522 ORTHO05D009518 1.4e-34 150.2 155 56.1
vmacro11126 Vaccinium macrocarpon HOM05D007522 ORTHO05D009518 2.3e-34 149.4 146 58.9
CiPaw.07G218500 Carya illinoinensis HOM05D007522 ORTHO05D009518 4.0e-34 148.7 160 53.8
Sabra06G0193900 Salix brachista HOM05D007522 ORTHO05D009518 4.0e-34 148.7 154 56.5
HanXRQChr13g0402121 Helianthus annuus HOM05D007522 ORTHO05D009518 5.2e-34 148.3 144 55.6
Oeu014660.1 Olea europaea HOM05D007522 ORTHO05D009518 1.2e-33 147.1 163 52.1
GSVIVG01035795001 Vitis vinifera HOM05D007522 ORTHO05D009518 1.5e-33 146.7 152 53.3
Eucgr.C02850 Eucalyptus grandis HOM05D007522 ORTHO05D009518 3.4e-33 145.6 148 56.1
MELO3C011219.2 Cucumis melo HOM05D007522 ORTHO05D009518 5.7e-33 144.8 153 54.9
Eucgr.L02345 Eucalyptus grandis HOM05D007522 ORTHO05D009518 5.7e-33 144.8 148 55.4
Peaxi162Scf00267g00097 Petunia axillaris HOM05D007522 ORTHO05D009518 7.5e-33 144.4 158 50.0
Ciclev10009234m.g Citrus clementina HOM05D007522 ORTHO05D009518 1.3e-32 143.7 162 53.1
Solyc06g011403.1 Solanum lycopersicum HOM05D007522 ORTHO05D009518 1.3e-32 143.7 159 50.3
CsaV3_2G031690 Cucumis sativus L. HOM05D007522 ORTHO05D009518 2.2e-32 142.9 154 54.5
Sopen06g006080 Solanum pennellii HOM05D007522 ORTHO05D009518 2.2e-32 142.9 159 50.3
FAN15G2839 Fragaria x ananassa HOM05D007522 ORTHO05D009518 4.8e-32 141.7 149 53.7
Potri.006G247900 Populus trichocarpa HOM05D007522 ORTHO05D009518 4.8e-32 141.7 159 53.5
Prupe.1G467900 Prunus persica HOM05D007522 ORTHO05D009518 6.3e-32 141.4 144 54.2
THA.LOC104819887 Tarenaya hassleriana HOM05D007522 ORTHO05D009518 1.1e-31 140.6 187 46.5
Atru.chr7.2341 Acer truncatum HOM05D007522 ORTHO05D009518 1.4e-31 140.2 156 52.6
FvH4_2g30000 Fragaria vesca HOM05D007522 ORTHO05D009518 3.1e-31 139.0 149 53.0
Manes.03G065616 Manihot esculenta HOM05D007522 ORTHO05D009518 5.4e-31 138.3 144 54.2
FAN27G1610 Fragaria x ananassa HOM05D007522 ORTHO05D009518 9.1e-31 137.5 149 52.3
Lsat_1_v5_gn_6_22860 Lactuca sativa HOM05D007522 ORTHO05D009518 9.1e-31 137.5 143 53.8
ECA233G0736 Erigeron canadensis HOM05D007522 ORTHO05D009518 1.2e-30 137.1 145 55.2
Psat0s1782g0120 Pisum sativum HOM05D007522 ORTHO05D009518 1.2e-30 137.1 150 52.0
RcHm_v2.0_Chr6g0312911 Rosa chinensis HOM05D007522 ORTHO05D009518 1.2e-30 137.1 149 50.3
TPR.G34679 Trifolium pratense HOM05D007522 ORTHO05D009518 1.2e-30 137.1 148 52.0
PSO063G3677 Papaver somniferum HOM05D007522 ORTHO05D009518 1.6e-30 136.7 162 51.9
Aqoxy2G01954 Aquilegia oxysepala HOM05D007522 ORTHO05D009518 4.5e-30 135.2 156 51.9
MSTRG.25867 Avicennia marina HOM05D007522 ORTHO05D009518 4.5e-30 135.2 144 54.2
FAN24G0147 Fragaria x ananassa HOM05D007522 ORTHO05D009518 5.9e-30 134.8 149 51.7
Medtr3g108530 Medicago truncatula HOM05D007522 ORTHO05D009518 7.7e-30 134.4 150 51.3
Lalb_Chr08g0243841 Lupinus albus HOM05D007522 ORTHO05D009518 1.0e-29 134.0 148 51.4
Migut.A00284 Erythranthe guttata HOM05D007522 ORTHO05D009518 1.3e-29 133.7 145 55.2
MD15G1116400 Malus domestica HOM05D007522 ORTHO05D009518 1.7e-29 133.3 144 52.1
PSO782G1743 Papaver somniferum HOM05D007522 ORTHO05D009518 2.3e-29 132.9 162 51.2
VMungo1309G1471 Vigna mungo HOM05D007522 ORTHO05D009518 2.9e-29 132.5 162 47.5
arahy.Tifrunner.gnm1.ann1.EE81AI Arachis hypogaea HOM05D007522 ORTHO05D009518 6.6e-29 131.3 159 48.4
arahy.Tifrunner.gnm1.ann1.J4BCXN Arachis hypogaea HOM05D007522 ORTHO05D009518 6.6e-29 131.3 159 48.4
Glyma.06G072500 Glycine max HOM05D007522 ORTHO05D009518 6.6e-29 131.3 159 47.8
Lj1g0002015 Lotus japonicus HOM05D007522 ORTHO05D009518 1.5e-28 130.2 148 50.7
Ca_15704_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001124 1.9e-28 129.8 149 51.0
Phvul.009G097000 Phaseolus vulgaris HOM05D007522 ORTHO05D009518 2.5e-28 129.4 148 49.3
Dinv30202 Davidia involucrata HOM05D007522 ORTHO05D009518 5.5e-28 128.3 136 55.1
CANSAT11G2673 Cannabis sativa HOM05D007522 ORTHO05D009518 6.1e-27 124.8 142 49.3
Nn8g39310 Nelumbo nucifera HOM05D007522 ORTHO05D009518 6.1e-27 124.8 148 49.3
SalBow8G3415 Salvia bowleyana HOM05D007522 ORTHO05D009518 1.8e-26 123.2 104 62.5
HPP92_008699 Vanilla planifolia HOM05D002348 ORTHO05D002512 4.0e-26 122.1 119 54.6
Pp3c10_19840 Physcomitrium patens HOM05D007522 ORTHO05D009518 3.4e-25 119.0 154 42.9
CDE02G2364 Ceratophyllum demersum HOM05D007522 ORTHO05D009518 5.7e-25 118.2 104 58.7
ATR0083G062 Amborella trichopoda HOM05D007522 ORTHO05D009518 2.8e-24 115.9 154 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2977 Anthoceros agrestis HOM05D007522 ORTHO05D009518 6.3e-24 114.8 120 50.0
Mapoly0015s0053 Marchantia polymorpha HOM05D007522 ORTHO05D009518 6.3e-24 114.8 156 43.6
AUR62024852 Chenopodium quinoa HOM05D007522 ORTHO05D009518 9.5e-20 100.9 82 69.5
CBR_g51241 Chara braunii HOM05D007522 ORTHO05D009518 6.1e-19 98.2 145 37.9
Cpa.g.sc91.26 Carica papaya HOM05D007522 ORTHO05D009518 8.3e-16 87.8 154 41.6
CBR_g75925 Chara braunii HOM05D007522 ORTHO05D009518 2.4e-15 86.3 85 48.2
Haze_21613 Corylus avellana HOM05D007522 ORTHO05D009518 6.4e-08 61.6 162 30.9


User provided reference genes

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