Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g024740 Amaranthus hybridus HOM05D000321 ORTHO05D000204 1.0e-45 186.4 98 100.0
Ah.12g055660 Amaranthus hybridus HOM05D000321 ORTHO05D000204 5.9e-17 90.9 92 62.0
EL10Ac5g11985 Beta vulgaris HOM05D000321 ORTHO05D000204 7.2e-15 84.0 92 56.5
AUR62007374 Chenopodium quinoa HOM05D000321 ORTHO05D000204 7.2e-15 84.0 92 56.5
AUR62018614 Chenopodium quinoa HOM05D000321 ORTHO05D000204 7.2e-15 84.0 92 56.5
Ah.07g201100 Amaranthus hybridus HOM05D000321 ORTHO05D000204 2.7e-14 82.0 92 54.3
Hund11164 Selenicereus undatus HOM05D000321 ORTHO05D000204 4.7e-14 81.3 92 53.3
RcHm_v2.0_Chr7g0212871 Rosa chinensis HOM05D000321 ORTHO05D000204 1.2e-12 76.6 93 50.5
Manes.17G009300 Manihot esculenta HOM05D000321 ORTHO05D000204 1.5e-12 76.3 93 49.5
Actinidia27271 Actinidia chinensis HOM05D000321 ORTHO05D000204 2.0e-12 75.9 91 49.5
Sc07g0008450 Simmondsia chinensis HOM05D000321 ORTHO05D000204 2.6e-12 75.5 92 50.0
Prupe.5G024400 Prunus persica HOM05D000321 ORTHO05D000204 3.4e-12 75.1 93 49.5
Potri.003G099800 Populus trichocarpa HOM05D000321 ORTHO05D000204 5.7e-12 74.3 92 48.9
PGR042G2721 Punica granatum HOM05D000321 ORTHO05D000204 5.7e-12 74.3 93 48.4
FvH4_5g23560 Fragaria vesca HOM05D000321 ORTHO05D000204 7.5e-12 73.9 93 48.4
FAN04G2877 Fragaria x ananassa HOM05D000321 ORTHO05D000204 7.5e-12 73.9 93 48.4
FAN13G0765 Fragaria x ananassa HOM05D000321 ORTHO05D000204 7.5e-12 73.9 93 48.4
FAN18G3009 Fragaria x ananassa HOM05D000321 ORTHO05D000204 7.5e-12 73.9 93 48.4
FAN18G4454 Fragaria x ananassa HOM05D000321 ORTHO05D000204 7.5e-12 73.9 93 48.4
Nn1g01932 Nelumbo nucifera HOM05D000321 ORTHO05D000204 7.5e-12 73.9 92 50.0
TAR629G1770 Trochodendron aralioides HOM05D000321 ORTHO05D000204 7.5e-12 73.9 92 48.9
Ciclev10000312m.g Citrus clementina HOM05D000321 ORTHO05D000204 9.8e-12 73.6 93 49.5
AL1G46160 Arabidopsis lyrata HOM05D000321 ORTHO05D000204 1.3e-11 73.2 92 50.0
QL12p000392 Quercus lobata HOM05D000321 ORTHO05D000204 1.3e-11 73.2 92 50.0
Sp1g27760 Schrenkiella parvula HOM05D000321 ORTHO05D000204 1.3e-11 73.2 93 47.3
THA.LOC104798499 Tarenaya hassleriana HOM05D000321 ORTHO05D000204 1.3e-11 73.2 92 50.0
AT1G32090 Arabidopsis thaliana HOM05D000321 ORTHO05D000204 1.7e-11 72.8 91 50.5
BcaC05g27929 Brassica carinata HOM05D000321 ORTHO05D000204 2.2e-11 72.4 93 47.3
A05p25280 Brassica napus HOM05D000321 ORTHO05D000204 2.2e-11 72.4 93 47.3
C05p39350 Brassica napus HOM05D000321 ORTHO05D000204 2.2e-11 72.4 93 47.3
BolC5t32671H Brassica oleracea HOM05D000321 ORTHO05D000204 2.2e-11 72.4 93 47.3
CSS0006392 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 2.2e-11 72.4 91 47.3
Carub.0001s3041 Capsella rubella HOM05D000321 ORTHO05D000204 2.2e-11 72.4 92 47.8
Ca_25151_v3 Cicer arietinum L. HOM05D000321 ORTHO05D000204 2.2e-11 72.4 93 46.2
DCAR_024943 Daucus carota HOM05D000321 ORTHO05D000204 2.2e-11 72.4 91 49.5
Dinv06898 Davidia involucrata HOM05D000321 ORTHO05D000204 2.2e-11 72.4 91 48.4
Dinv29030 Davidia involucrata HOM05D000321 ORTHO05D000204 2.2e-11 72.4 91 49.5
Eucgr.D02623 Eucalyptus grandis HOM05D000321 ORTHO05D000204 2.2e-11 72.4 93 47.3
Gohir.A08G152300 Gossypium hirsutum HOM05D000321 ORTHO05D000204 2.2e-11 72.4 91 47.3
Gohir.A12G204400 Gossypium hirsutum HOM05D000321 ORTHO05D000204 2.2e-11 72.4 95 46.3
Gohir.D12G206800 Gossypium hirsutum HOM05D000321 ORTHO05D000204 2.2e-11 72.4 95 46.3
Gorai.008G222200 Gossypium raimondii HOM05D000321 ORTHO05D000204 2.2e-11 72.4 95 46.3
BraA05t21412Z Brassica rapa HOM05D000321 ORTHO05D000204 2.8e-11 72.0 93 46.2
Lsat_1_v5_gn_6_73800 Lactuca sativa HOM05D000321 ORTHO05D000204 2.8e-11 72.0 91 47.3
MD06G1023400 Malus domestica HOM05D000321 ORTHO05D000204 2.8e-11 72.0 93 48.4
Oeu061070.1 Olea europaea HOM05D000321 ORTHO05D000204 2.8e-11 72.0 91 49.5
Aa31LG2G13900 Aethionema arabicum HOM05D000321 ORTHO05D000204 3.7e-11 71.6 101 42.6
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 3.7e-11 71.6 92 47.8
Cfa012554 Carpinus fangiana HOM05D000321 ORTHO05D000204 3.7e-11 71.6 93 47.3
Os10g0579100 Oryza sativa ssp. japonica HOM05D000321 ORTHO05D000204 3.7e-11 71.6 92 47.8
arahy.Tifrunner.gnm1.ann1.Q8GWNP Arachis hypogaea HOM05D000321 ORTHO05D000204 4.8e-11 71.2 93 48.4
arahy.Tifrunner.gnm1.ann1.UFY076 Arachis hypogaea HOM05D000321 ORTHO05D000204 4.8e-11 71.2 93 48.4
CsaV3_3G001190 Cucumis sativus L. HOM05D000321 ORTHO05D000204 4.8e-11 71.2 91 47.3
Potri.001G133800 Populus trichocarpa HOM05D000321 ORTHO05D000204 4.8e-11 71.2 93 47.3
Thhalv10006831m.g Eutrema salsugineum HOM05D000321 ORTHO05D000204 6.3e-11 70.9 93 45.2
Eucgr.E01258 Eucalyptus grandis HOM05D000321 ORTHO05D000204 8.3e-11 70.5 93 45.2
Lalb_Chr16g0380891 Lupinus albus HOM05D000321 ORTHO05D000204 8.3e-11 70.5 93 46.2
Medtr5g027510 Medicago truncatula HOM05D000321 ORTHO05D000204 8.3e-11 70.5 93 46.2
Psat2g139600 Pisum sativum HOM05D000321 ORTHO05D000204 8.3e-11 70.5 93 46.2
Thecc.03G314200 Theobroma cacao HOM05D000321 ORTHO05D000204 8.3e-11 70.5 93 46.2
Atru.chr6.1562 Acer truncatum HOM05D000321 ORTHO05D000204 1.1e-10 70.1 93 47.3
ClCG10G001170 Citrullus lanatus HOM05D000321 ORTHO05D000204 1.1e-10 70.1 92 45.7
Rhsim11G0027500 Rhododendron simsii HOM05D000321 ORTHO05D000204 1.1e-10 70.1 91 45.1
TPR.G9083 Trifolium pratense HOM05D000321 ORTHO05D000204 1.1e-10 70.1 93 45.2
Duzib205G1635 Durio zibethinus HOM05D000321 ORTHO05D000204 1.4e-10 69.7 93 45.2
Phvul.002G133000 Phaseolus vulgaris HOM05D000321 ORTHO05D000204 1.4e-10 69.7 93 43.0
COL.COLO4_16887 Corchorus olitorius HOM05D000321 ORTHO05D000204 1.8e-10 69.3 95 45.3
VMungo1215G3436 Vigna mungo HOM05D000321 ORTHO05D000204 1.8e-10 69.3 92 44.6
Aqoxy3G02112 Aquilegia oxysepala HOM05D000321 ORTHO05D000204 2.4e-10 68.9 92 46.7
Nitab4.5_0000809g0040 Nicotiana tabacum HOM05D000321 ORTHO05D000204 2.4e-10 68.9 91 48.4
Sed0028091 Sechium edule HOM05D000321 ORTHO05D000204 2.4e-10 68.9 91 45.1
CAN.G773.14 Capsicum annuum HOM05D000321 ORTHO05D000204 3.1e-10 68.6 92 46.7
MELO3C013809.2 Cucumis melo HOM05D000321 ORTHO05D000204 3.1e-10 68.6 92 44.6
Sabra01G0103500 Salix brachista HOM05D000321 ORTHO05D000204 3.1e-10 68.6 108 44.4
Nitab4.5_0000543g0110 Nicotiana tabacum HOM05D000321 ORTHO05D000204 4.1e-10 68.2 91 47.3
Peaxi162Scf00408g00241 Petunia axillaris HOM05D000321 ORTHO05D000204 4.1e-10 68.2 92 46.7
ATR0829G219 Amborella trichopoda HOM05D000321 ORTHO05D000204 5.4e-10 67.8 94 41.5
Duzib084G0385 Durio zibethinus HOM05D000321 ORTHO05D000204 5.4e-10 67.8 93 44.1
Glyma.01G010100 Glycine max HOM05D000321 ORTHO05D000204 5.4e-10 67.8 92 44.6
Sabra03G0067800 Salix brachista HOM05D000321 ORTHO05D000204 7.0e-10 67.4 93 45.2
HanXRQChr03g0081691 Helianthus annuus HOM05D000321 ORTHO05D000204 9.1e-10 67.0 91 45.1
CARHR031440 Cardamine hirsuta HOM05D000321 ORTHO05D000204 1.2e-09 66.6 92 44.6
Migut.A00585 Erythranthe guttata HOM05D000321 ORTHO05D000204 1.2e-09 66.6 91 45.1
Lsat_1_v5_gn_6_17801 Lactuca sativa HOM05D000321 ORTHO05D000204 1.2e-09 66.6 105 39.0
PGR031G2115 Punica granatum HOM05D000321 ORTHO05D000204 1.2e-09 66.6 93 43.0
CANSAT21G1430 Cannabis sativa HOM05D000321 ORTHO05D000204 1.6e-09 66.2 93 45.2
SGA_v2.0_scaffold144G35865 Striga asiatica HOM05D000321 ORTHO05D000204 1.6e-09 66.2 92 45.7
Lj2g0002608 Lotus japonicus HOM05D000321 ORTHO05D000204 2.0e-09 65.9 93 41.9
SalBow1G3420 Salvia bowleyana HOM05D000321 ORTHO05D000204 2.0e-09 65.9 91 46.2
SalBow1G8115 Salvia bowleyana HOM05D000321 ORTHO05D000204 2.0e-09 65.9 91 46.2
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 2.7e-09 65.5 91 44.0
Haze_08109 Corylus avellana HOM05D000321 ORTHO05D000204 5.9e-09 64.3 115 39.1
Migut.E01331 Erythranthe guttata HOM05D000321 ORTHO05D000204 5.9e-09 64.3 91 45.1
Sopen08g024920 Solanum pennellii HOM05D000321 ORTHO05D000204 5.9e-09 64.3 92 45.7
Solyc08g076310.3 Solanum lycopersicum HOM05D000321 ORTHO05D000204 1.0e-08 63.5 92 45.7
SGA_v2.0_scaffold89G27425 Striga asiatica HOM05D000321 ORTHO05D000204 1.0e-08 63.5 91 45.1
Glyma.09G211000 Glycine max HOM05D000321 ORTHO05D000204 1.7e-08 62.8 92 41.3
HanXRQChr07g0194331 Helianthus annuus HOM05D000321 ORTHO05D000204 2.2e-08 62.4 91 41.8
SEGI_34692 Sequoiadendron giganteum HOM05D000321 ORTHO05D000204 2.2e-08 62.4 92 43.5
CDE11G1057 Ceratophyllum demersum HOM05D000321 ORTHO05D000204 2.9e-08 62.0 92 40.2
Lalb_Chr05g0215601 Lupinus albus HOM05D000321 ORTHO05D000204 2.9e-08 62.0 93 40.9
Cc08_g04040 Coffea canephora HOM05D000321 ORTHO05D000204 5.0e-08 61.2 93 43.0
ECA240G2929 Erigeron canadensis HOM05D000321 ORTHO05D000204 5.0e-08 61.2 91 44.0
HPP92_003308 Vanilla planifolia HOM05D000321 ORTHO05D000204 1.1e-07 60.1 91 45.1
HPP92_003339 Vanilla planifolia HOM05D000321 ORTHO05D000204 1.1e-07 60.1 91 45.1
unitig_37.g12124 Utricularia gibba HOM05D000321 ORTHO05D000204 1.5e-07 59.7 91 45.1
CiPaw.11G101400 Carya illinoinensis HOM05D000321 ORTHO05D000204 2.5e-07 58.9 79 44.3
SalBow8G1327 Salvia bowleyana HOM05D000321 ORTHO05D000204 4.2e-07 58.2 91 42.9
unitig_747.g21359 Utricularia gibba HOM05D000321 ORTHO05D000204 5.5e-07 57.8 92 38.0
Gorai.004G180800 Gossypium raimondii HOM05D000321 ORTHO05D000204 7.2e-07 57.4 73 47.9
PSO063G4234 Papaver somniferum HOM05D000321 ORTHO05D000204 9.4e-07 57.0 78 43.6
PSO782G2925 Papaver somniferum HOM05D000321 ORTHO05D000204 9.4e-07 57.0 78 43.6
vmacro00235 Vaccinium macrocarpon HOM05D000321 ORTHO05D000204 1.2e-06 56.6 92 39.1
GSVIVG01011543001 Vitis vinifera HOM05D000321 ORTHO05D000204 1.6e-06 56.2 79 43.0
MSTRG.13900 Avicennia marina HOM05D000321 ORTHO05D000204 8.0e-06 53.9 91 38.5


User provided reference genes

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