Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 1.6e-53 212.6 116 100.0
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 1.8e-41 172.6 112 81.2
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 2.4e-41 172.2 112 81.2
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 2.6e-32 142.1 112 70.5
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 1.2e-29 133.3 102 70.6
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 5.2e-28 127.9 111 64.0
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 1.1e-27 126.7 104 64.4
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 4.4e-27 124.8 103 66.0
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 5.7e-27 124.4 110 61.8
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 5.7e-27 124.4 109 62.4
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 7.4e-27 124.0 112 61.6
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 1.3e-26 123.2 107 62.6
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 2.2e-26 122.5 104 63.5
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 2.2e-26 122.5 103 64.1
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 2.2e-26 122.5 103 65.0
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 2.8e-26 122.1 95 69.5
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 3.7e-26 121.7 103 65.0
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 3.7e-26 121.7 113 60.2
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 6.3e-26 120.9 102 63.7
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 8.2e-26 120.6 103 61.2
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 1.1e-25 120.2 112 57.1
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 1.4e-25 119.8 109 59.6
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 1.4e-25 119.8 104 61.5
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.8e-25 119.4 101 63.4
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.8e-25 119.4 101 63.4
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 2.4e-25 119.0 101 63.4
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 2.4e-25 119.0 111 61.3
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 2.4e-25 119.0 107 59.8
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 5.3e-25 117.9 103 64.1
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 5.3e-25 117.9 103 63.1
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 7.0e-25 117.5 102 63.7
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 1.2e-24 116.7 114 57.0
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 1.6e-24 116.3 102 59.8
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 1.6e-24 116.3 105 60.0
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 2.0e-24 115.9 113 57.5
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 2.6e-24 115.5 112 58.0
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 2.6e-24 115.5 104 60.6
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 2.6e-24 115.5 103 60.2
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 4.5e-24 114.8 106 59.4
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 5.9e-24 114.4 109 56.0
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 5.9e-24 114.4 113 59.3
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 7.7e-24 114.0 103 59.2
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 7.7e-24 114.0 99 61.6
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 7.7e-24 114.0 103 60.2
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 1.3e-23 113.2 104 59.6
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 2.2e-23 112.5 103 59.2
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 2.2e-23 112.5 101 60.4
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 3.8e-23 111.7 98 62.2
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 3.8e-23 111.7 105 61.0
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 3.8e-23 111.7 105 57.1
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 5.0e-23 111.3 105 58.1
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 8.5e-23 110.5 113 56.6
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 8.5e-23 110.5 113 56.6
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 8.5e-23 110.5 109 56.9
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 1.1e-22 110.2 112 56.2
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 1.5e-22 109.8 106 55.7
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 1.9e-22 109.4 103 60.2
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 2.5e-22 109.0 95 58.9
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 2.5e-22 109.0 96 62.5
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 3.2e-22 108.6 111 55.9
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 4.2e-22 108.2 96 62.5
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 5.5e-22 107.8 112 56.2
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 1.2e-21 106.7 103 53.4
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 1.2e-21 106.7 112 53.6
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 1.2e-21 106.7 106 54.7
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 1.6e-21 106.3 98 57.1
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 1.6e-21 106.3 111 54.1
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 2.1e-21 105.9 103 57.3
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 2.7e-21 105.5 111 54.1
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 2.7e-21 105.5 100 59.0
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 2.7e-21 105.5 93 62.4
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 4.7e-21 104.8 104 57.7
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 4.7e-21 104.8 112 50.9
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 6.1e-21 104.4 103 54.4
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 6.1e-21 104.4 103 56.3
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 8.0e-21 104.0 107 53.3
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 1.0e-20 103.6 107 53.3
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 1.0e-20 103.6 107 53.3
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 2.3e-20 102.4 113 53.1
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 4.0e-20 101.7 93 57.0
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 6.8e-20 100.9 101 54.5
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 3.7e-18 95.1 129 48.1
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 4.8e-18 94.7 125 46.4
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 2.4e-17 92.4 93 51.6
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 2.4e-17 92.4 161 39.1
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 2.7e-16 89.0 97 54.6
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 3.5e-16 88.6 79 58.2
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 4.5e-16 88.2 109 51.4
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 1.7e-15 86.3 82 59.8
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 6.5e-15 84.3 107 48.6
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 2.7e-13 79.0 82 54.9
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 3.6e-13 78.6 77 57.1
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 8.0e-13 77.4 109 43.1
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 1.4e-12 76.6 98 44.9
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 1.4e-12 76.6 80 53.8
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 3.0e-12 75.5 68 58.8
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 2.6e-11 72.4 103 43.7
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 5.7e-11 71.2 83 50.6
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 1.7e-10 69.7 71 53.5
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 2.2e-10 69.3 95 46.3
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.7e-10 68.6 93 44.1
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 2.0e-08 62.8 110 40.9
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 6.6e-07 57.8 75 42.7
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 4.2e-06 55.1 92 42.4


User provided reference genes

Program Settings