Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 9.3e-189 663.3 316 100.0
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.0e-163 580.1 304 88.8
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.8e-163 579.3 304 89.1
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 7.4e-162 573.9 304 88.5
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.8e-155 552.7 301 85.0
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 3.7e-153 545.0 308 82.1
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 7.0e-152 540.8 304 82.2
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 1.2e-151 540.0 298 84.2
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 2.6e-151 538.9 302 82.1
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 1.3e-150 536.6 302 82.1
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.7e-150 536.2 301 81.4
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 2.9e-150 535.4 296 82.4
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.8e-150 535.0 304 80.9
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.4e-149 533.1 304 80.3
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 4.2e-149 531.6 301 81.4
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 5.5e-149 531.2 304 80.6
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 7.2e-149 530.8 304 80.3
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 7.2e-149 530.8 304 80.3
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 1.2e-148 530.0 289 84.4
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.6e-148 529.6 296 82.4
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.6e-148 529.6 294 83.0
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.7e-148 528.9 303 81.5
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 3.6e-148 528.5 304 80.9
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 6.1e-148 527.7 298 81.2
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 8.0e-148 527.3 304 80.3
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 1.0e-147 526.9 299 82.3
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 1.0e-147 526.9 296 81.4
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.4e-147 526.6 303 81.2
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 1.4e-147 526.6 298 81.5
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.8e-147 526.2 304 79.9
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.3e-147 525.8 299 80.6
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 2.3e-147 525.8 306 80.1
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.3e-147 525.8 299 81.9
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 3.0e-147 525.4 301 80.1
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 3.0e-147 525.4 293 81.9
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 3.9e-147 525.0 294 82.3
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.9e-147 525.0 297 82.2
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.9e-147 525.0 299 80.9
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 3.9e-147 525.0 294 81.6
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 3.9e-147 525.0 294 81.6
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 5.2e-147 524.6 299 80.6
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 5.2e-147 524.6 299 80.6
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 8.8e-147 523.9 301 80.4
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 8.8e-147 523.9 303 78.9
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.1e-146 523.5 302 81.1
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.5e-146 523.1 292 82.2
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.5e-146 523.1 296 81.1
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.0e-146 522.7 299 80.9
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 2.6e-146 522.3 296 80.7
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 3.3e-146 521.9 289 82.7
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 4.4e-146 521.5 305 79.3
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 4.4e-146 521.5 306 80.1
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 4.4e-146 521.5 309 78.3
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 4.4e-146 521.5 304 79.9
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 5.7e-146 521.2 294 81.6
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 5.7e-146 521.2 305 79.3
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 7.4e-146 520.8 299 79.6
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 9.7e-146 520.4 303 80.5
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.7e-146 520.4 299 80.6
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 9.7e-146 520.4 299 79.9
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 1.3e-145 520.0 299 80.3
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.2e-145 519.2 302 79.5
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 2.8e-145 518.8 305 77.7
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 4.8e-145 518.1 298 79.9
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 4.8e-145 518.1 291 80.4
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 8.2e-145 517.3 305 78.7
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 8.2e-145 517.3 305 78.7
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 8.2e-145 517.3 303 78.9
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 8.2e-145 517.3 304 78.9
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.4e-144 516.5 308 77.6
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 1.4e-144 516.5 308 77.3
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 1.8e-144 516.2 293 80.9
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 2.4e-144 515.8 294 79.6
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.4e-144 515.8 300 79.7
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 2.4e-144 515.8 307 78.8
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.4e-144 515.8 308 77.9
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.4e-144 515.8 308 77.9
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 3.1e-144 515.4 305 78.4
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 3.1e-144 515.4 305 78.4
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 5.3e-144 514.6 303 78.9
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 7.0e-144 514.2 308 78.9
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 9.1e-144 513.8 292 81.5
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.2e-143 513.5 300 78.0
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.2e-143 513.5 289 81.3
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.2e-143 513.5 297 79.5
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 2.0e-143 512.7 309 77.7
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 2.6e-143 512.3 308 77.6
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 4.5e-143 511.5 296 80.7
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 4.5e-143 511.5 299 79.3
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.0e-142 510.4 295 80.0
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 2.2e-142 509.2 297 78.8
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 4.2e-141 505.0 289 80.6
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 5.5e-141 504.6 298 78.9
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 5.5e-141 504.6 295 79.0
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.2e-140 503.4 295 79.0
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 6.1e-140 501.1 300 77.7
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 8.0e-140 500.7 331 71.9
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.0e-139 500.4 304 77.3
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.4e-139 500.0 279 82.8
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 4.0e-139 498.4 362 66.9
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 8.8e-139 497.3 294 77.9
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 4.4e-138 495.0 278 82.0
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 3.1e-136 488.8 299 75.9
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 3.1e-136 488.8 293 77.5
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 7.0e-136 487.6 295 75.9
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 9.1e-136 487.3 299 75.6
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 7.2e-133 477.6 295 73.9
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 3.7e-129 465.3 292 73.3
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 7.0e-128 461.1 276 75.0
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 3.5e-127 458.8 289 73.0
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 4.7e-124 448.4 296 68.9
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.3e-123 446.0 291 73.9
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 2.4e-120 436.0 289 68.2
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 4.1e-120 435.3 250 79.2
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.6e-119 433.3 288 68.1
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 1.9e-117 426.4 249 79.1
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 8.0e-116 421.0 249 77.9
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.6e-114 416.0 294 63.6
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.6e-114 416.0 294 63.6
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 4.9e-113 411.8 314 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 6.2e-108 394.8 293 60.8
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 2.7e-103 379.4 229 79.0
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 1.9e-96 356.7 297 56.9
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 2.7e-95 352.8 246 67.9
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 8.6e-94 347.8 215 75.8
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 2.0e-82 310.1 296 50.3
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 4.3e-77 292.4 329 44.4
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 2.7e-63 246.5 342 38.6
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.9e-49 199.9 123 72.4
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.0e-30 138.3 82 79.3
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 1.8e-27 127.5 89 73.0
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.2e-18 98.2 74 64.9
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 3.8e-17 93.2 66 69.7
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.8e-14 84.3 45 80.0
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 2.0e-13 80.9 50 70.0
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 2.6e-13 80.5 41 82.9
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 1.1e-11 75.1 52 69.2
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.1e-08 65.1 42 61.9


User provided reference genes

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