Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g237060 Amaranthus hybridus HOM05D007916 ORTHO05D010074 5.6e-49 197.2 94 100.0
AUR62029252 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.4e-23 112.1 94 56.4
EL10Ac4g07997 Beta vulgaris HOM05D007916 ORTHO05D010074 5.3e-23 110.9 93 55.9
AUR62034212 Chenopodium quinoa HOM05D007916 ORTHO05D010074 6.9e-23 110.5 93 54.8
AUR62034214 Chenopodium quinoa HOM05D007916 ORTHO05D010074 9.0e-23 110.2 92 55.4
AUR62029249 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.9e-21 105.1 92 51.1
AUR62014631 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.2e-19 99.8 85 54.1
Ca_22424_v3 Cicer arietinum L. HOM05D007916 ORTHO05D010074 8.2e-16 87.0 90 45.6
ATR0661G436 Amborella trichopoda HOM05D007916 ORTHO05D010074 1.8e-15 85.9 89 46.1
Medtr8g073770 Medicago truncatula HOM05D007916 ORTHO05D010074 5.3e-15 84.3 90 43.3
Medtr8g073850 Medicago truncatula HOM05D007916 ORTHO05D010074 5.3e-15 84.3 90 43.3
TPR.G18290 Trifolium pratense HOM05D007916 ORTHO05D010074 5.3e-15 84.3 90 43.3
CAN.G1238.3 Capsicum annuum HOM05D007916 ORTHO05D010074 9.0e-15 83.6 94 44.7
Lj4P234T30 Lonicera japonica HOM05D007916 ORTHO05D010074 2.6e-14 82.0 89 43.8
arahy.Tifrunner.gnm1.ann1.B3G9N7 Arachis hypogaea HOM05D007916 ORTHO05D010074 4.5e-14 81.3 89 43.8
arahy.Tifrunner.gnm1.ann1.IBR8Q2 Arachis hypogaea HOM05D007916 ORTHO05D010074 4.5e-14 81.3 89 43.8
Glyma.09G198900 Glycine max HOM05D007916 ORTHO05D010074 4.5e-14 81.3 89 46.1
Sopen02g027500 Solanum pennellii HOM05D007916 ORTHO05D010074 4.5e-14 81.3 93 44.1
TAR381G0850 Trochodendron aralioides HOM05D007916 ORTHO05D010074 4.5e-14 81.3 92 42.4
PGSC0003DMG403001521 Solanum tuberosum HOM05D007916 ORTHO05D010074 5.9e-14 80.9 93 44.1
Aqoxy6G01679 Aquilegia oxysepala HOM05D007916 ORTHO05D010074 7.7e-14 80.5 88 43.2
Lj2g0011068 Lotus japonicus HOM05D007916 ORTHO05D010074 1.0e-13 80.1 89 42.7
Lalb_Chr09g0321231 Lupinus albus HOM05D007916 ORTHO05D010074 1.0e-13 80.1 89 43.8
Nn5g30966 Nelumbo nucifera HOM05D007916 ORTHO05D010074 1.3e-13 79.7 90 42.2
Dinv40180 Davidia involucrata HOM05D000046 ORTHO05D000195 1.7e-13 79.3 90 43.3
Lj2g0002075 Lotus japonicus HOM05D007916 ORTHO05D010074 1.7e-13 79.3 89 42.7
Thecc.01G006300 Theobroma cacao HOM05D007916 ORTHO05D010074 1.7e-13 79.3 89 43.8
Hma1.2p1_0085F.1_g044830 Hydrangea macrophylla HOM05D007916 ORTHO05D010074 2.2e-13 79.0 90 43.3
VMungo0251G0273 Vigna mungo HOM05D007916 ORTHO05D010074 2.2e-13 79.0 89 43.8
AUR62040166 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.9e-13 78.6 90 42.2
Psat4g104200 Pisum sativum HOM05D007916 ORTHO05D010074 2.9e-13 78.6 89 43.8
Sabra05G0083300 Salix brachista HOM05D007916 ORTHO05D010074 2.9e-13 78.6 89 43.8
Solyc02g082740.1 Solanum lycopersicum HOM05D007916 ORTHO05D010074 2.9e-13 78.6 93 43.0
PGR102G1177 Punica granatum HOM05D007916 ORTHO05D010074 3.8e-13 78.2 90 42.2
MBI08_g04809_MAGBIO Magnolia biondii HOM05D007916 ORTHO05D010074 6.5e-13 77.4 89 43.8
CANSAT25G0415 Cannabis sativa HOM05D007916 ORTHO05D010074 8.5e-13 77.0 89 42.7
CiPaw.08G181000 Carya illinoinensis HOM05D007916 ORTHO05D010074 8.5e-13 77.0 89 41.6
Duzib264G1152 Durio zibethinus HOM05D007916 ORTHO05D010074 1.1e-12 76.6 89 42.7
Phvul.003G269500 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 1.1e-12 76.6 89 42.7
QL06p052846 Quercus lobata HOM05D007916 ORTHO05D010074 1.1e-12 76.6 89 41.6
COL.COLO4_22545 Corchorus olitorius HOM05D007916 ORTHO05D010074 1.4e-12 76.3 87 41.4
HanXRQChr14g0442451 Helianthus annuus HOM05D007916 ORTHO05D010074 2.5e-12 75.5 90 41.1
Ah.08g211140 Amaranthus hybridus HOM05D007916 ORTHO05D010074 5.5e-12 74.3 89 42.7
MELO3C013719.2 Cucumis melo HOM05D007916 ORTHO05D010074 7.2e-12 73.9 89 41.6
Manes.01G154600 Manihot esculenta HOM05D007916 ORTHO05D010074 7.2e-12 73.9 93 39.8
Manes.17G004000 Manihot esculenta HOM05D007916 ORTHO05D010074 7.2e-12 73.9 93 39.8
Prupe.7G181300 Prunus persica HOM05D007916 ORTHO05D010074 7.2e-12 73.9 89 38.2
ClCG10G000210 Citrullus lanatus HOM05D007916 ORTHO05D010074 9.4e-12 73.6 89 41.6
HanXRQChr14g0442461 Helianthus annuus HOM05D007916 ORTHO05D010074 9.4e-12 73.6 89 40.4
Manes.02G113500 Manihot esculenta HOM05D007916 ORTHO05D010074 9.4e-12 73.6 93 39.8
Potri.005G100700 Populus trichocarpa HOM05D007916 ORTHO05D010074 9.4e-12 73.6 89 40.4
AUR62037915 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.6e-11 72.8 90 38.9
Os01g0879200 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 1.6e-11 72.8 90 40.0
Phvul.002G115700 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 2.1e-11 72.4 90 37.8
VMungo1215G2711 Vigna mungo HOM05D007916 ORTHO05D010074 2.1e-11 72.4 86 38.4
MD02G1118100 Malus domestica HOM05D007916 ORTHO05D010074 2.7e-11 72.0 89 37.1
FAN28G0654 Fragaria x ananassa HOM05D007916 ORTHO05D010074 3.6e-11 71.6 89 38.2
Cfa007071 Carpinus fangiana HOM05D007916 ORTHO05D010074 4.6e-11 71.2 89 40.4
Cfa021284 Carpinus fangiana HOM05D007916 ORTHO05D010074 4.6e-11 71.2 89 40.4
Potri.005G100600 Populus trichocarpa HOM05D007916 ORTHO05D010074 4.6e-11 71.2 87 39.1
RcHm_v2.0_Chr2g0097361 Rosa chinensis HOM05D007916 ORTHO05D010074 4.6e-11 71.2 89 38.2
FvH4_1g10500 Fragaria vesca HOM05D007916 ORTHO05D010074 6.1e-11 70.9 89 37.1
FAN19G0206 Fragaria x ananassa HOM05D007916 ORTHO05D010074 6.1e-11 70.9 89 37.1
FAN26G2729 Fragaria x ananassa HOM05D007916 ORTHO05D010074 7.9e-11 70.5 89 37.1
FAN26G3374 Fragaria x ananassa HOM05D007916 ORTHO05D010074 7.9e-11 70.5 89 37.1
Sabra05G0083200 Salix brachista HOM05D007916 ORTHO05D010074 7.9e-11 70.5 88 43.2
Glyma.11G085200 Glycine max HOM05D007916 ORTHO05D010074 1.4e-10 69.7 88 38.6
EL10Ac1g00145 Beta vulgaris HOM05D007916 ORTHO05D010074 1.8e-10 69.3 85 44.7
CSS0010065 Camellia sinensis var. sinensis HOM05D007916 ORTHO05D010074 3.9e-10 68.2 89 38.2
AUR62029251 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.5e-09 66.2 54 53.7
Zm00001eb145860 Zea mays HOM05D007916 ORTHO05D010074 1.5e-09 66.2 89 33.7
Lsat_1_v5_gn_2_73460 Lactuca sativa HOM05D007916 ORTHO05D010074 2.0e-09 65.9 86 38.4
Ah.05g178650 Amaranthus hybridus HOM05D007916 ORTHO05D010074 5.7e-09 64.3 89 40.4
MD02G1118400 Malus domestica HOM05D007916 ORTHO05D010074 5.7e-09 64.3 88 33.0
Zm00001eb051440 Zea mays HOM05D007916 ORTHO05D010074 8.2e-08 60.5 72 34.7
Os01g0879300 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 1.2e-06 56.6 89 32.6


User provided reference genes

Program Settings