Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g236870 Amaranthus hybridus HOM05D008210 ORTHO05D010078 9.7e-77 290.0 143 100.0
Ah.09g236890 Amaranthus hybridus HOM05D008210 ORTHO05D010078 7.2e-56 220.7 109 100.0
EL10Ac8g19959 Beta vulgaris HOM05D008210 ORTHO05D010078 5.6e-24 114.8 111 58.6
Haze_17600 Corylus avellana HOM05D008210 ORTHO05D010078 2.9e-12 75.9 79 45.6
Rhsim06G0039800 Rhododendron simsii HOM05D008210 ORTHO05D010078 3.7e-12 75.5 109 40.4
Gorai.010G013900 Gossypium raimondii HOM05D008210 ORTHO05D010078 8.3e-12 74.3 105 41.9
FvH4_2g40530 Fragaria vesca HOM05D008210 ORTHO05D010078 3.2e-11 72.4 74 50.0
Cfa018466 Carpinus fangiana HOM05D008210 ORTHO05D010078 4.1e-11 72.0 81 44.4
Glyma.04G035200 Glycine max HOM05D008210 ORTHO05D010078 4.1e-11 72.0 118 39.0
VMungo1309G3066 Vigna mungo HOM05D008210 ORTHO05D010078 4.1e-11 72.0 117 41.9
Nitab4.5_0000110g0010 Nicotiana tabacum HOM05D008210 ORTHO05D010078 7.1e-11 71.2 91 44.0
Medtr3g111460 Medicago truncatula HOM05D008210 ORTHO05D010078 9.2e-11 70.9 120 40.0
FAN15G3542 Fragaria x ananassa HOM05D008210 ORTHO05D010078 1.2e-10 70.5 111 40.5
Aqoxy2G03320 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 1.6e-10 70.1 88 42.0
Aqoxy6G00952 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 1.6e-10 70.1 88 42.0
Ciclev10002912m.g Citrus clementina HOM05D008210 ORTHO05D010078 2.1e-10 69.7 116 37.9
SGA_v2.0_scaffold14G07009 Striga asiatica HOM05D008210 ORTHO05D010078 2.1e-10 69.7 95 44.2
Cpa.g.sc64.23 Carica papaya HOM05D008210 ORTHO05D010078 2.7e-10 69.3 84 41.7
CiPaw.15G068700 Carya illinoinensis HOM05D008210 ORTHO05D010078 3.5e-10 68.9 96 39.6
TAR381G1599 Trochodendron aralioides HOM05D008210 ORTHO05D010078 3.5e-10 68.9 80 40.0
Eucgr.F01503 Eucalyptus grandis HOM05D008210 ORTHO05D010078 4.6e-10 68.6 92 39.1
Gohir.A06G013600 Gossypium hirsutum HOM05D008210 ORTHO05D010078 4.6e-10 68.6 103 38.8
Nn5g29422 Nelumbo nucifera HOM05D008210 ORTHO05D010078 4.6e-10 68.6 72 45.8
Phvul.009G061375 Phaseolus vulgaris HOM05D008210 ORTHO05D010078 4.6e-10 68.6 116 40.5
COL.COLO4_26398 Corchorus olitorius HOM05D008210 ORTHO05D010078 6.0e-10 68.2 74 41.9
Prupe.1G386500 Prunus persica HOM05D008210 ORTHO05D010078 6.0e-10 68.2 111 36.9
Thecc.08G019400 Theobroma cacao HOM05D008210 ORTHO05D010078 1.0e-09 67.4 74 41.9
Gohir.D06G011200 Gossypium hirsutum HOM05D008210 ORTHO05D010078 1.3e-09 67.0 104 36.5
Atru.chr13.582 Acer truncatum HOM05D008210 ORTHO05D010078 2.3e-09 66.2 72 43.1
Hma1.2p1_0023F.1_g015200 Hydrangea macrophylla HOM05D008210 ORTHO05D010078 3.0e-09 65.9 75 46.7
Potri.002G130500 Populus trichocarpa HOM05D008210 ORTHO05D010078 3.0e-09 65.9 74 44.6
QL02p006968 Quercus lobata HOM05D008210 ORTHO05D010078 3.0e-09 65.9 84 39.3
Atru.chr13.581 Acer truncatum HOM05D008210 ORTHO05D010078 3.9e-09 65.5 72 44.4
RcHm_v2.0_Chr6g0300191 Rosa chinensis HOM05D008210 ORTHO05D010078 3.9e-09 65.5 111 38.7
TPR.G12346 Trifolium pratense HOM05D008210 ORTHO05D010078 5.1e-09 65.1 117 33.3
Nn4g22836 Nelumbo nucifera HOM05D008210 ORTHO05D010078 6.6e-09 64.7 67 52.2
Psat0s3268g0120 Pisum sativum HOM05D008210 ORTHO05D010078 6.6e-09 64.7 127 36.2
MSTRG.22279 Avicennia marina HOM05D008210 ORTHO05D010078 1.5e-08 63.5 87 44.8
Nn7g37755 Nelumbo nucifera HOM05D008210 ORTHO05D010078 1.5e-08 63.5 60 48.3
Glyma.06G035100 Glycine max HOM05D008210 ORTHO05D010078 3.3e-08 62.4 111 39.6
arahy.Tifrunner.gnm1.ann1.KBQ6U1 Arachis hypogaea HOM05D008210 ORTHO05D010078 4.3e-08 62.0 92 41.3
Manes.05G166500 Manihot esculenta HOM05D008210 ORTHO05D010078 4.3e-08 62.0 87 41.4
Ca_15536_v3 Cicer arietinum L. HOM05D008210 ORTHO05D010078 5.6e-08 61.6 92 38.0
Dinv36022 Davidia involucrata HOM05D000260 ORTHO05D002276 5.6e-08 61.6 107 35.5
TAR628G0004 Trochodendron aralioides HOM05D008210 ORTHO05D010078 5.6e-08 61.6 56 53.6
Lj1g0017592 Lotus japonicus HOM05D008210 ORTHO05D010078 7.3e-08 61.2 75 45.3
Sabra14G0027900 Salix brachista HOM05D008210 ORTHO05D010078 7.3e-08 61.2 90 38.9
Lsat_1_v5_gn_1_19601 Lactuca sativa HOM05D008210 ORTHO05D010078 2.1e-07 59.7 95 38.9
Sc02g0006720 Simmondsia chinensis HOM05D008210 ORTHO05D010078 3.6e-07 58.9 75 45.3
Aqoxy6G00950 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 6.2e-07 58.2 62 48.4
Carub.0001s3639 Capsella rubella HOM05D015684 ORTHO05D010078 1.8e-06 56.6 58 44.8
Lalb_Chr08g0245741 Lupinus albus HOM05D008210 ORTHO05D010078 2.4e-06 56.2 117 31.6
Potri.007G034700 Populus trichocarpa HOM05D008334 ORTHO05D010366 4.0e-06 55.5 85 37.6
Nn6g32154 Nelumbo nucifera HOM05D008210 ORTHO05D010078 6.8e-06 54.7 48 56.2
Potri.014G038500 Populus trichocarpa HOM05D008210 ORTHO05D010078 6.8e-06 54.7 111 32.4
SalBow8G0954 Salvia bowleyana HOM05D008210 ORTHO05D010078 6.8e-06 54.7 72 44.4


User provided reference genes

Program Settings