Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g236380 Amaranthus hybridus HOM05D000155 ORTHO05D000022 2.4e-48 195.3 105 100.0
Rhsim13G0169200 Rhododendron simsii HOM05D000155 ORTHO05D000022 2.0e-26 122.5 98 63.3
AUR62012503 Chenopodium quinoa HOM05D000155 ORTHO05D000022 1.7e-25 119.4 102 62.7
Atru.chr10.2028 Acer truncatum HOM05D000155 ORTHO05D000022 2.2e-25 119.0 99 59.6
Lj1P1214T60 Lonicera japonica HOM05D000155 ORTHO05D000022 4.8e-25 117.9 76 72.4
Lalb_Chr18g0059991 Lupinus albus HOM05D000155 ORTHO05D000022 4.1e-24 114.8 98 59.2
Lsat_1_v5_gn_4_58600 Lactuca sativa HOM05D000774 ORTHO05D000602 5.3e-24 114.4 77 70.1
AUR62014692 Chenopodium quinoa HOM05D000155 ORTHO05D000022 1.6e-23 112.8 102 60.8
QL05p080949 Quercus lobata HOM05D000155 ORTHO05D000022 1.6e-23 112.8 99 58.6
TPR.G36747 Trifolium pratense HOM05D000155 ORTHO05D000022 1.6e-23 112.8 98 58.2
PGSC0003DMG400005085 Solanum tuberosum HOM05D000155 ORTHO05D000022 2.0e-23 112.5 79 69.6
Lj6g0012103 Lotus japonicus HOM05D000155 ORTHO05D000022 2.7e-23 112.1 98 60.2
arahy.Tifrunner.gnm1.ann1.GCX8RD Arachis hypogaea HOM05D000155 ORTHO05D000022 1.3e-22 109.8 99 57.6
Psat1g209280 Pisum sativum HOM05D000155 ORTHO05D000022 1.3e-22 109.8 98 57.1
Psat1g209320 Pisum sativum HOM05D000155 ORTHO05D000022 1.3e-22 109.8 98 57.1
RcHm_v2.0_Chr5g0005841 Rosa chinensis HOM05D000155 ORTHO05D000022 2.2e-22 109.0 98 57.1
COL.COLO4_31628 Corchorus olitorius HOM05D000774 ORTHO05D000602 2.9e-22 108.6 74 67.6
arahy.Tifrunner.gnm1.ann1.XP25HR Arachis hypogaea HOM05D000774 ORTHO05D000602 1.5e-21 106.3 77 66.2
SGA_v2.0_scaffold7G03920 Striga asiatica HOM05D000155 ORTHO05D000022 1.5e-21 106.3 89 60.7
VMungo0540G0582 Vigna mungo HOM05D000774 ORTHO05D000602 1.5e-21 106.3 76 67.1
FvH4_3g03751 Fragaria vesca HOM05D000155 ORTHO05D000022 1.9e-21 105.9 98 55.1
Cc02_g12270 Coffea canephora HOM05D000155 ORTHO05D000022 2.5e-21 105.5 77 62.3
SGA_v2.0_scaffold7G03916 Striga asiatica HOM05D000155 ORTHO05D000022 1.2e-20 103.2 88 59.1
Sc05g0008160 Simmondsia chinensis HOM05D000155 ORTHO05D000022 4.7e-20 101.3 100 55.0
Lalb_Chr20g0122381 Lupinus albus HOM05D000155 ORTHO05D000022 8.0e-20 100.5 98 54.1
ClCG03G005440 Citrullus lanatus HOM05D000155 ORTHO05D000022 1.4e-19 99.8 100 51.0
Actinidia26986 Actinidia chinensis HOM05D000774 ORTHO05D000602 2.3e-19 99.0 82 61.0
SGA_v2.0_scaffold7G03918 Striga asiatica HOM05D000155 ORTHO05D000022 2.0e-18 95.9 75 60.0
AL7G32660 Arabidopsis lyrata HOM05D000155 ORTHO05D000022 2.6e-18 95.5 77 57.1
ECA234G2338 Erigeron canadensis HOM05D000774 ORTHO05D000602 2.6e-18 95.5 71 64.8
Nn1g06818 Nelumbo nucifera HOM05D000155 ORTHO05D000022 2.6e-18 95.5 101 51.5
Sp7g19540 Schrenkiella parvula HOM05D000155 ORTHO05D000022 3.4e-18 95.1 77 59.7
CARHR228090 Cardamine hirsuta HOM05D000155 ORTHO05D000022 9.8e-18 93.6 100 48.0
CSS0005291 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 6.3e-17 90.9 98 51.0
Sed0011096 Sechium edule HOM05D000155 ORTHO05D000022 8.3e-17 90.5 77 58.4
Aqoxy1G03921 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 1.4e-16 89.7 80 57.5
BraA01t01216Z Brassica rapa HOM05D000155 ORTHO05D000022 2.4e-16 89.0 99 48.5
A01p12730 Brassica napus HOM05D000155 ORTHO05D000022 3.1e-16 88.6 99 47.5
MELO3C002549.2 Cucumis melo HOM05D000155 ORTHO05D000022 3.1e-16 88.6 92 52.2
BcaC09g51229 Brassica carinata HOM05D000155 ORTHO05D000022 5.4e-16 87.8 76 57.9
C01p15320 Brassica napus HOM05D000155 ORTHO05D000022 5.4e-16 87.8 76 57.9
BolC1t01486H Brassica oleracea HOM05D000155 ORTHO05D000022 5.4e-16 87.8 76 57.9
CsaV3_1G011700 Cucumis sativus L. HOM05D000155 ORTHO05D000022 1.6e-15 86.3 79 59.5
Os06g0683500 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 2.1e-12 75.9 64 60.9
Os02g0630250 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 1.8e-11 72.8 64 57.8
Os03g0158600 Oryza sativa ssp. japonica HOM05D000155 ORTHO05D000022 2.6e-10 68.9 64 54.7
CiPaw.01G053100 Carya illinoinensis HOM05D000155 ORTHO05D000022 9.2e-08 60.5 49 44.9
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 2.7e-07 58.9 47 46.8
Nitab4.5_0006480g0010 Nicotiana tabacum HOM05D000155 ORTHO05D000022 7.7e-07 57.4 45 51.1
MBI14_g11704_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-06 57.0 46 47.8
MBI07_g24347_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-06 56.6 72 40.3
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 1.7e-06 56.2 66 42.4
SEGI_27105 Sequoiadendron giganteum HOM05D015923 ORTHO05D018120 1.7e-06 56.2 59 49.2
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 2.3e-06 55.8 46 50.0
Prupe.1G291700 Prunus persica HOM05D000061 ORTHO05D000050 2.3e-06 55.8 53 43.4
MBI07_g09569_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.9e-06 55.5 46 50.0
MBI11_g19465_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.8e-06 55.1 75 40.0
MBI11_g19496_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.8e-06 55.1 50 48.0
MBI07_g25508_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.0e-06 54.7 63 39.7
MBI15_g36799_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.0e-06 54.7 68 38.2
MBI17_g43446_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.6e-06 54.3 45 51.1
MBI19_g25269_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.6e-06 54.3 45 48.9
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-06 53.9 51 45.1
COL.COLO4_33037 Corchorus olitorius HOM05D000155 ORTHO05D000022 8.6e-06 53.9 67 40.3
Hma1.2p1_0897F.1_g234290 Hydrangea macrophylla HOM05D000155 ORTHO05D000022 8.6e-06 53.9 69 39.1
MBI16_g35230_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.6e-06 53.9 49 49.0


User provided reference genes

Program Settings