Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g236110 Amaranthus hybridus HOM05D001660 ORTHO05D003277 1.0e-48 196.4 98 100.0
Ah.09g236120 Amaranthus hybridus HOM05D001660 ORTHO05D003277 2.8e-43 178.3 108 86.1
AUR62019436 Chenopodium quinoa HOM05D001660 ORTHO05D003277 2.5e-31 138.7 96 74.0
EL10Ac8g20526 Beta vulgaris HOM05D001660 ORTHO05D003277 4.2e-31 137.9 96 70.8
AUR62039196 Chenopodium quinoa HOM05D001660 ORTHO05D003277 9.4e-31 136.7 96 72.9
Hund21276 Selenicereus undatus HOM05D001660 ORTHO05D003277 2.0e-28 129.0 96 66.7
Sabra02G0060700 Salix brachista HOM05D001660 ORTHO05D003277 3.3e-28 128.3 97 62.9
Atru.chr10.2005 Acer truncatum HOM05D001660 ORTHO05D003277 1.3e-27 126.3 97 62.9
Oeu016124.1 Olea europaea HOM05D001660 ORTHO05D003277 2.2e-27 125.6 95 65.3
Potri.002G077200 Populus trichocarpa HOM05D001660 ORTHO05D003277 2.2e-27 125.6 97 61.9
Cfa000356 Carpinus fangiana HOM05D001660 ORTHO05D003277 6.3e-27 124.0 95 64.2
Manes.16G020800 Manihot esculenta HOM05D001660 ORTHO05D003277 6.3e-27 124.0 97 63.9
Prupe.8G053000 Prunus persica HOM05D001660 ORTHO05D003277 6.3e-27 124.0 97 64.9
PGR004G2075 Punica granatum HOM05D001660 ORTHO05D003277 8.2e-27 123.6 97 61.9
MD10G1046000 Malus domestica HOM05D001660 ORTHO05D003277 1.4e-26 122.9 97 62.9
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.4e-26 122.9 97 62.9
AUR62014720 Chenopodium quinoa HOM05D001660 ORTHO05D003277 1.8e-26 122.5 96 63.5
Eucgr.G00853 Eucalyptus grandis HOM05D001660 ORTHO05D003277 2.4e-26 122.1 97 60.8
Sc08g0003500 Simmondsia chinensis HOM05D001660 ORTHO05D003277 2.4e-26 122.1 96 68.8
Dinv40485 Davidia involucrata HOM05D001660 ORTHO05D003277 3.1e-26 121.7 97 61.9
FvH4_3g04040 Fragaria vesca HOM05D001660 ORTHO05D003277 3.1e-26 121.7 97 62.9
FAN11G0361 Fragaria x ananassa HOM05D001660 ORTHO05D003277 3.1e-26 121.7 97 62.9
FAN25G0401 Fragaria x ananassa HOM05D001660 ORTHO05D003277 3.1e-26 121.7 97 62.9
PGR042G2885 Punica granatum HOM05D001660 ORTHO05D003277 3.1e-26 121.7 97 61.9
RcHm_v2.0_Chr5g0006411 Rosa chinensis HOM05D001660 ORTHO05D003277 3.1e-26 121.7 97 63.9
Lj1C1213G3 Lonicera japonica HOM05D001660 ORTHO05D003277 5.3e-26 120.9 97 62.9
Nn1g03908 Nelumbo nucifera HOM05D001660 ORTHO05D003277 5.3e-26 120.9 97 60.8
BcaNung02795 Brassica carinata HOM05D001660 ORTHO05D003277 7.0e-26 120.6 97 60.8
Lj1g0015056 Lotus japonicus HOM05D001660 ORTHO05D003277 7.0e-26 120.6 97 62.9
AT4G21470 Arabidopsis thaliana HOM05D001660 ORTHO05D003277 9.1e-26 120.2 97 59.8
BcaC09g51218 Brassica carinata HOM05D001660 ORTHO05D003277 9.1e-26 120.2 97 60.8
A01p12790 Brassica napus HOM05D001660 ORTHO05D003277 9.1e-26 120.2 97 60.8
C01p15390 Brassica napus HOM05D001660 ORTHO05D003277 9.1e-26 120.2 97 60.8
BolC1t01493H Brassica oleracea HOM05D001660 ORTHO05D003277 9.1e-26 120.2 97 60.8
BraA01t01222Z Brassica rapa HOM05D001660 ORTHO05D003277 9.1e-26 120.2 97 60.8
Haze_06570 Corylus avellana HOM05D001660 ORTHO05D003277 9.1e-26 120.2 97 59.8
Rhsim13G0170300 Rhododendron simsii HOM05D001660 ORTHO05D003277 9.1e-26 120.2 97 62.9
ATR0787G139 Amborella trichopoda HOM05D001660 ORTHO05D003277 1.2e-25 119.8 98 64.3
AL7G32600 Arabidopsis lyrata HOM05D001660 ORTHO05D003277 2.0e-25 119.0 97 59.8
CSS0023132 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 2.0e-25 119.0 97 61.9
Nitab4.5_0003574g0040 Nicotiana tabacum HOM05D001660 ORTHO05D003277 2.0e-25 119.0 97 60.8
RcHm_v2.0_Chr5g0006511 Rosa chinensis HOM05D001660 ORTHO05D003277 2.0e-25 119.0 97 59.8
Sabra05G0138900 Salix brachista HOM05D001660 ORTHO05D003277 2.0e-25 119.0 97 58.8
Carub.0007s1997 Capsella rubella HOM05D001660 ORTHO05D003277 2.6e-25 118.6 97 60.8
CiPaw.09G158200 Carya illinoinensis HOM05D001660 ORTHO05D003277 2.6e-25 118.6 97 58.8
PSO210G1142 Papaver somniferum HOM05D001660 ORTHO05D003277 2.6e-25 118.6 97 59.8
PSO832G0018 Papaver somniferum HOM05D001660 ORTHO05D003277 2.6e-25 118.6 97 59.8
Ca_18484_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 3.5e-25 118.2 97 60.8
Gohir.D05G168500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 3.5e-25 118.2 95 63.2
Gorai.009G173700 Gossypium raimondii HOM05D001660 ORTHO05D003277 3.5e-25 118.2 95 63.2
CARHR228140 Cardamine hirsuta HOM05D001660 ORTHO05D003277 4.5e-25 117.9 97 57.7
GSVIVG01003195001 Vitis vinifera HOM05D001660 ORTHO05D003277 4.5e-25 117.9 97 59.8
GSVIVG01003197001 Vitis vinifera HOM05D001660 ORTHO05D003277 4.5e-25 117.9 97 59.8
Thhalv10025469m.g Eutrema salsugineum HOM05D001660 ORTHO05D003277 5.9e-25 117.5 97 58.8
Sp7g19590 Schrenkiella parvula HOM05D001660 ORTHO05D003277 5.9e-25 117.5 97 58.8
Psat5g291880 Pisum sativum HOM05D001660 ORTHO05D003277 7.7e-25 117.1 97 59.8
Aa31LG6G3480 Aethionema arabicum HOM05D001660 ORTHO05D003277 1.3e-24 116.3 97 57.7
CANSAT64G2883 Cannabis sativa HOM05D001660 ORTHO05D003277 1.3e-24 116.3 96 57.3
TWI38G0734 Tripterygium wilfordii HOM05D001660 ORTHO05D003277 1.3e-24 116.3 97 58.8
CAN.G424.10 Capsicum annuum HOM05D001660 ORTHO05D003277 1.7e-24 115.9 97 59.8
Migut.M01210 Erythranthe guttata HOM05D001660 ORTHO05D003277 1.7e-24 115.9 95 60.0
Nitab4.5_0000190g0120 Nicotiana tabacum HOM05D001660 ORTHO05D003277 1.7e-24 115.9 97 58.8
MSTRG.8638 Avicennia marina HOM05D001660 ORTHO05D003277 2.2e-24 115.5 95 62.1
Psat7g108520 Pisum sativum HOM05D001660 ORTHO05D003277 2.9e-24 115.2 97 58.8
Migut.I00194 Erythranthe guttata HOM05D001660 ORTHO05D003277 3.8e-24 114.8 95 58.9
Nitab4.5_0003834g0030 Nicotiana tabacum HOM05D001660 ORTHO05D003277 3.8e-24 114.8 97 58.8
QL04p018339 Quercus lobata HOM05D001660 ORTHO05D003277 3.8e-24 114.8 97 55.7
Hma1.2p1_0144F.1_g064640 Hydrangea macrophylla HOM05D001660 ORTHO05D003277 5.0e-24 114.4 96 58.3
Duzib235G1360 Durio zibethinus HOM05D001660 ORTHO05D003277 6.5e-24 114.0 95 60.0
Potri.005G183400 Populus trichocarpa HOM05D001660 ORTHO05D003277 6.5e-24 114.0 97 56.7
Nn1g06756 Nelumbo nucifera HOM05D001660 ORTHO05D003277 8.5e-24 113.6 97 56.7
Actinidia27000 Actinidia chinensis HOM05D001660 ORTHO05D003277 1.1e-23 113.2 95 58.9
DCAR_004137 Daucus carota HOM05D001660 ORTHO05D003277 1.1e-23 113.2 97 59.8
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.1e-23 113.2 91 61.5
SGA_v2.0_scaffold114G31978 Striga asiatica HOM05D001660 ORTHO05D003277 1.5e-23 112.8 95 58.9
Lsat_1_v5_gn_7_19661 Lactuca sativa HOM05D001660 ORTHO05D003277 1.9e-23 112.5 95 58.9
RcHm_v2.0_Chr5g0006501 Rosa chinensis HOM05D001660 ORTHO05D003277 1.9e-23 112.5 93 60.2
COL.COLO4_31583 Corchorus olitorius HOM05D001660 ORTHO05D003277 2.5e-23 112.1 95 60.0
Solyc02g079100.3 Solanum lycopersicum HOM05D001660 ORTHO05D003277 2.5e-23 112.1 97 57.7
Sopen02g023910 Solanum pennellii HOM05D001660 ORTHO05D003277 2.5e-23 112.1 97 57.7
Cpa.g.sc27.119 Carica papaya HOM05D001660 ORTHO05D003277 3.2e-23 111.7 93 59.1
THA.LOC104812699 Tarenaya hassleriana HOM05D001660 ORTHO05D003277 3.2e-23 111.7 97 57.7
HanXRQChr04g0124591 Helianthus annuus HOM05D001660 ORTHO05D003277 5.5e-23 110.9 95 57.9
Cc02_g12460 Coffea canephora HOM05D001660 ORTHO05D003277 7.2e-23 110.5 97 57.7
PSO541G0051 Papaver somniferum HOM05D001660 ORTHO05D003277 7.2e-23 110.5 97 56.7
Thecc.06G198900 Theobroma cacao HOM05D001660 ORTHO05D003277 9.4e-23 110.2 93 59.1
Ciclev10015592m.g Citrus clementina HOM05D001660 ORTHO05D003277 1.6e-22 109.4 94 57.4
Medtr4g091060 Medicago truncatula HOM05D001660 ORTHO05D003277 2.1e-22 109.0 90 61.1
TAR627G0958 Trochodendron aralioides HOM05D001660 ORTHO05D003277 2.7e-22 108.6 82 64.6
arahy.Tifrunner.gnm1.ann1.F92SL8 Arachis hypogaea HOM05D001660 ORTHO05D003277 3.6e-22 108.2 89 60.7
arahy.Tifrunner.gnm1.ann1.YQ76T0 Arachis hypogaea HOM05D001660 ORTHO05D003277 3.6e-22 108.2 89 60.7
MELO3C002558.2 Cucumis melo HOM05D001660 ORTHO05D003277 6.1e-22 107.5 96 50.0
CsaV3_1G011810 Cucumis sativus L. HOM05D001660 ORTHO05D003277 8.0e-22 107.1 96 50.0
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 1.0e-21 106.7 91 59.3
VMungo0251G1038 Vigna mungo HOM05D001660 ORTHO05D003277 1.4e-21 106.3 97 57.7
Glyma.07G190300 Glycine max HOM05D001660 ORTHO05D003277 1.8e-21 105.9 97 57.7
AUR62016900 Chenopodium quinoa HOM05D001660 ORTHO05D003277 2.3e-21 105.5 152 43.4
Lj4g0007113 Lotus japonicus HOM05D001660 ORTHO05D003277 3.0e-21 105.1 98 56.1
SGA_v2.0_scaffold7G03952 Striga asiatica HOM05D001660 ORTHO05D003277 3.0e-21 105.1 97 53.6
TPR.G36995 Trifolium pratense HOM05D001660 ORTHO05D003277 3.0e-21 105.1 91 58.2
CDE02G1461 Ceratophyllum demersum HOM05D001660 ORTHO05D003277 6.7e-21 104.0 97 49.5
Phvul.002G222300 Phaseolus vulgaris HOM05D001660 ORTHO05D003277 6.7e-21 104.0 97 57.7
Lalb_Chr05g0218171 Lupinus albus HOM05D001660 ORTHO05D003277 8.8e-21 103.6 89 57.3
HPP92_027184 Vanilla planifolia HOM05D001660 ORTHO05D003277 8.8e-21 103.6 88 56.8
Gohir.A05G165500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 1.1e-20 103.2 95 55.8
Lalb_Chr09g0327381 Lupinus albus HOM05D001660 ORTHO05D003277 1.5e-20 102.8 89 56.2
Eucgr.G00852 Eucalyptus grandis HOM05D001660 ORTHO05D003277 2.0e-20 102.4 63 68.3
HanXRQChr09g0263881 Helianthus annuus HOM05D001660 ORTHO05D003277 7.4e-20 100.5 95 53.7
Os10g0464400 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D003277 9.7e-20 100.1 97 51.5
ClCG03G005540 Citrullus lanatus HOM05D001660 ORTHO05D003277 1.3e-19 99.8 88 51.1
Aqoxy2G02549 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 2.4e-18 95.5 96 49.0
Sed0021522 Sechium edule HOM05D001660 ORTHO05D003277 4.1e-18 94.7 95 48.4
Aqoxy5G02848 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 2.6e-17 92.0 88 52.3
Os10g0209300 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D003277 5.9e-17 90.9 92 50.0
Peaxi162Scf00355g00915 Petunia axillaris HOM05D001660 ORTHO05D003277 1.3e-16 89.7 62 62.9
vmacro03813 Vaccinium macrocarpon HOM05D001660 ORTHO05D003277 2.9e-16 88.6 66 62.1
MBI10_g16793_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D003277 5.0e-16 87.8 59 64.4
unitig_749.g14095 Utricularia gibba HOM05D001660 ORTHO05D003277 1.9e-15 85.9 87 50.6
RcHm_v2.0_Chr5g0006461 Rosa chinensis HOM05D001660 ORTHO05D003277 5.5e-15 84.3 85 54.1
SEGI_20739 Sequoiadendron giganteum HOM05D001660 ORTHO05D003277 7.2e-15 84.0 87 47.1
SMO174G0108 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 9.4e-15 83.6 80 53.8
Pp3c1_26770 Physcomitrium patens HOM05D001660 ORTHO05D003277 1.5e-12 76.3 79 50.6
ClCG07G002810 Citrullus lanatus HOM05D001660 ORTHO05D003277 4.4e-12 74.7 88 45.5
SMO201G0196 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 1.7e-11 72.8 84 45.2
SalBow7G3120 Salvia bowleyana HOM05D001660 ORTHO05D003277 3.7e-11 71.6 84 45.2
CsaV3_7G005640 Cucumis sativus L. HOM05D001660 ORTHO05D003277 6.3e-11 70.9 88 45.5
Mapoly0005s0066 Marchantia polymorpha HOM05D001660 ORTHO05D003277 6.3e-11 70.9 77 44.2
MELO3C018727.2 Cucumis melo HOM05D001660 ORTHO05D003277 1.1e-10 70.1 88 43.2
Aqoxy331s002 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 1.4e-10 69.7 55 54.5
QL08p041569 Quercus lobata HOM05D001660 ORTHO05D003277 2.4e-10 68.9 94 41.5
Migut.M00258 Erythranthe guttata HOM05D001660 ORTHO05D003277 7.0e-10 67.4 84 44.0
CiPaw.04G132800 Carya illinoinensis HOM05D001660 ORTHO05D003277 9.1e-10 67.0 94 43.6
Nn1g09107 Nelumbo nucifera HOM05D001660 ORTHO05D003277 9.1e-10 67.0 87 39.1
arahy.Tifrunner.gnm1.ann1.PY7LAP Arachis hypogaea HOM05D001660 ORTHO05D003277 1.6e-09 66.2 88 39.8
Oeu018756.1 Olea europaea HOM05D001660 ORTHO05D003277 1.6e-09 66.2 88 40.9
arahy.Tifrunner.gnm1.ann1.KZ47MP Arachis hypogaea HOM05D001660 ORTHO05D003277 2.7e-09 65.5 88 39.8
Sed0008639 Sechium edule HOM05D001660 ORTHO05D003277 2.7e-09 65.5 87 39.1
FAN14G3929 Fragaria x ananassa HOM05D001660 ORTHO05D003277 3.5e-09 65.1 87 39.1
Haze_13366 Corylus avellana HOM05D001660 ORTHO05D003277 4.5e-09 64.7 93 39.8
AagrBONN_evm.TU.Sc2ySwM_117.1412 Anthoceros agrestis HOM05D001660 ORTHO05D003277 5.9e-09 64.3 76 48.7
CSS0003043 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 5.9e-09 64.3 87 41.4
CSS0022098 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 5.9e-09 64.3 87 41.4
Cc05_g08290 Coffea canephora HOM05D001660 ORTHO05D003277 5.9e-09 64.3 93 34.4
GSVIVG01020703001 Vitis vinifera HOM05D001660 ORTHO05D003277 7.7e-09 63.9 87 37.9
Cfa023342 Carpinus fangiana HOM05D001660 ORTHO05D003277 1.0e-08 63.5 94 39.4
Glyma.13G291000 Glycine max HOM05D001660 ORTHO05D003277 1.0e-08 63.5 88 38.6
DCAR_021287 Daucus carota HOM05D001660 ORTHO05D003277 1.3e-08 63.2 87 39.1
Pp3c14_9170 Physcomitrium patens HOM05D001660 ORTHO05D003277 1.3e-08 63.2 87 37.9
ECA233G1954 Erigeron canadensis HOM05D001660 ORTHO05D003277 2.2e-08 62.4 87 35.6
RcHm_v2.0_Chr2g0129511 Rosa chinensis HOM05D001660 ORTHO05D003277 2.2e-08 62.4 88 37.5
Aqoxy1G02071 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 2.9e-08 62.0 84 39.3
Glyma.12G210300 Glycine max HOM05D001660 ORTHO05D003277 2.9e-08 62.0 88 37.5
Lsat_1_v5_gn_8_137980 Lactuca sativa HOM05D001660 ORTHO05D003277 3.8e-08 61.6 87 36.8
Lalb_Chr24g0400121 Lupinus albus HOM05D001660 ORTHO05D003277 3.8e-08 61.6 88 40.9
AUR62039011 Chenopodium quinoa HOM05D001660 ORTHO05D003277 5.0e-08 61.2 84 40.5
AUR62039013 Chenopodium quinoa HOM05D001660 ORTHO05D003277 5.0e-08 61.2 84 40.5
FAN02G2256 Fragaria x ananassa HOM05D001660 ORTHO05D003277 5.0e-08 61.2 88 38.6
FAN05G0387 Fragaria x ananassa HOM05D001660 ORTHO05D003277 5.0e-08 61.2 88 38.6
FAN09G4823 Fragaria x ananassa HOM05D001660 ORTHO05D003277 5.0e-08 61.2 88 38.6
PGR142G0811 Punica granatum HOM05D001660 ORTHO05D003277 5.0e-08 61.2 90 36.7
TPR.G11515 Trifolium pratense HOM05D001660 ORTHO05D003277 5.0e-08 61.2 88 37.5
FvH4_6g27330 Fragaria vesca HOM05D001660 ORTHO05D003277 8.5e-08 60.5 88 38.6
Actinidia10959 Actinidia chinensis HOM05D001660 ORTHO05D003277 1.1e-07 60.1 87 39.1
EL10Ac9g20924 Beta vulgaris HOM05D001660 ORTHO05D003277 1.1e-07 60.1 84 40.5
DCAR_021288 Daucus carota HOM05D001660 ORTHO05D003277 1.1e-07 60.1 87 40.2
Manes.01G132700 Manihot esculenta HOM05D001660 ORTHO05D003277 1.1e-07 60.1 88 36.4
Manes.01G133000 Manihot esculenta HOM05D001660 ORTHO05D003277 1.1e-07 60.1 88 36.4
AUR62038935 Chenopodium quinoa HOM05D001660 ORTHO05D003277 1.5e-07 59.7 83 41.0
HanXRQChr17g0557941 Helianthus annuus HOM05D001660 ORTHO05D003277 2.5e-07 58.9 87 35.6
Prupe.3G121200 Prunus persica HOM05D001660 ORTHO05D003277 2.5e-07 58.9 95 33.7
VMungo1080G1636 Vigna mungo HOM05D001660 ORTHO05D003277 2.5e-07 58.9 88 37.5
Zm00001eb370610 Zea mays HOM05D001660 ORTHO05D003277 2.5e-07 58.9 84 39.3
Phvul.005G095600 Phaseolus vulgaris HOM05D001660 ORTHO05D003277 4.2e-07 58.2 88 36.4
vmacro12373 Vaccinium macrocarpon HOM05D001660 ORTHO05D003277 4.2e-07 58.2 87 35.6
Ca_01456_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 7.2e-07 57.4 88 34.1
PSO541G3637 Papaver somniferum HOM05D001660 ORTHO05D003277 9.4e-07 57.0 79 44.3
PSO675G8608 Papaver somniferum HOM05D001660 ORTHO05D003277 9.4e-07 57.0 79 44.3
TWI14G0310 Tripterygium wilfordii HOM05D001660 ORTHO05D003277 9.4e-07 57.0 88 36.4
unitig_46.g18259 Utricularia gibba HOM05D001660 ORTHO05D003277 9.4e-07 57.0 84 35.7
unitig_49.g30746 Utricularia gibba HOM05D001660 ORTHO05D003277 9.4e-07 57.0 84 35.7
Medtr2g091220 Medicago truncatula HOM05D001660 ORTHO05D003277 1.2e-06 56.6 88 36.4
MD00G1176400 Malus domestica HOM05D001660 ORTHO05D003277 4.7e-06 54.7 95 33.7
Actinidia11148 Actinidia chinensis HOM05D001660 ORTHO05D003277 8.0e-06 53.9 87 40.2
Nitab4.5_0004426g0030 Nicotiana tabacum HOM05D001660 ORTHO05D003277 8.0e-06 53.9 91 29.7


User provided reference genes

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