Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 1.8e-143 512.7 280 100.0
EL10Ac8g20284 Beta vulgaris HOM05D004441 ORTHO05D003109 1.1e-47 194.5 322 49.1
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 6.2e-27 125.6 334 36.5
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 4.3e-20 102.8 326 35.0
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 6.2e-19 99.0 298 35.2
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 8.9e-18 95.1 295 36.3
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.5e-17 94.4 333 33.3
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 2.0e-17 94.0 292 36.0
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 2.0e-17 94.0 292 36.0
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 5.8e-17 92.4 297 35.0
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 7.6e-17 92.0 329 32.8
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 1.7e-16 90.9 323 34.4
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 6.4e-16 89.0 312 34.6
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 6.4e-16 89.0 303 33.7
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.4e-15 87.8 302 34.4
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.4e-15 87.8 302 34.4
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.9e-15 87.4 304 33.6
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 1.9e-15 87.4 318 32.7
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 2.4e-15 87.0 332 34.3
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 3.2e-15 86.7 318 36.2
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 5.4e-15 85.9 304 34.5
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 5.4e-15 85.9 300 35.0
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 9.3e-15 85.1 296 34.8
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.6e-14 84.3 327 33.0
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.6e-14 84.3 313 32.3
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.1e-14 84.0 320 32.2
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.5e-14 83.2 333 32.4
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.5e-14 83.2 332 32.5
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.3e-13 81.3 309 30.1
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 6.6e-13 79.0 310 32.6
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.1e-12 78.2 305 32.5
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.5e-12 77.8 247 34.8
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.9e-12 77.4 307 31.3
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 4.3e-12 76.3 307 30.6
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 7.3e-12 75.5 192 38.0
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 9.6e-12 75.1 296 31.1
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 9.6e-12 75.1 312 33.0
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 9.6e-12 75.1 299 32.1
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 2.8e-11 73.6 300 31.3
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.8e-11 73.6 309 30.4
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 2.8e-11 73.6 310 31.9
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 3.6e-11 73.2 294 32.3
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 4.8e-11 72.8 318 28.6
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.1e-10 71.6 347 30.8
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 1.4e-10 71.2 324 32.7
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.4e-10 71.2 303 31.7
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.4e-10 71.2 328 32.9
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 1.8e-10 70.9 311 31.8
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.8e-10 70.9 298 32.9
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 3.1e-10 70.1 331 30.5
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 3.1e-10 70.1 306 33.0
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.3e-10 69.3 312 32.1
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 6.9e-10 68.9 306 32.0
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 1.2e-09 68.2 319 29.8
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.2e-09 68.2 306 31.4
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.2e-09 68.2 345 30.1
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.5e-09 67.8 305 30.8
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.5e-09 67.8 322 33.9
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 3.4e-09 66.6 125 46.4
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 4.4e-09 66.2 191 38.2
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 4.4e-09 66.2 318 32.4
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 5.8e-09 65.9 254 31.5
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 9.9e-09 65.1 260 33.5
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 9.9e-09 65.1 272 29.8
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 2.2e-08 63.9 297 30.0
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.2e-08 63.9 251 31.1
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 4.9e-08 62.8 305 33.4
Nitab4.5_0001833g0010 Nicotiana tabacum HOM05D021131 ORTHO05D022971 1.4e-07 61.2 100 45.0
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 1.4e-07 61.2 352 31.0
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.9e-07 60.8 316 31.6
Nitab4.5_0008104g0020 Nicotiana tabacum HOM05D021131 ORTHO05D022971 1.9e-07 60.8 99 45.5
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 2.4e-07 60.5 298 29.9
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 2.4e-07 60.5 305 31.8
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 2.4e-07 60.5 219 33.3
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 3.2e-07 60.1 300 31.7
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 4.2e-07 59.7 301 32.6
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.4e-07 59.3 309 29.4
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 5.4e-07 59.3 308 30.2
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 7.1e-07 58.9 326 29.1
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 9.3e-07 58.5 191 33.0
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 9.3e-07 58.5 328 31.4
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.2e-06 58.2 191 36.1
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.2e-06 58.2 314 31.8
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.6e-06 57.8 301 29.9
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.1e-06 57.4 191 33.0
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 2.1e-06 57.4 287 26.5
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.7e-06 57.0 318 31.8
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 6.0e-06 55.8 302 30.1
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 6.0e-06 55.8 188 36.2
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 6.0e-06 55.8 291 27.1
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 7.9e-06 55.5 309 30.7
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 7.9e-06 55.5 309 28.8


User provided reference genes

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