Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 0.0e+00 1751.1 935 100.0
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 0.0e+00 1129.0 932 68.1
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 8.1e-273 944.1 936 62.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.4e-261 906.0 872 61.1
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.1e-250 870.5 817 62.3
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 5.5e-229 798.5 904 55.0
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 4.5e-191 672.5 1000 45.6
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 4.6e-175 619.4 953 45.6
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.3e-174 617.1 936 45.6
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 9.5e-173 611.7 951 44.8
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.4e-168 597.0 950 45.3
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 5.4e-168 595.9 937 44.2
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 9.2e-168 595.1 936 44.1
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 7.8e-167 592.0 947 43.4
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.3e-166 591.3 965 43.7
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.0e-166 589.3 938 45.0
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 4.3e-165 586.3 942 43.8
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.6e-164 584.3 943 43.8
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.1e-164 583.9 940 43.7
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 2.3e-163 580.5 961 43.7
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.9e-161 572.8 936 44.7
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.6e-159 567.8 794 47.9
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 3.5e-159 566.6 947 43.2
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 6.0e-159 565.8 954 43.3
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.1e-157 561.6 1031 41.8
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.5e-157 561.2 955 44.3
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 7.3e-157 558.9 948 43.5
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 8.9e-155 552.0 954 43.2
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.2e-154 551.6 806 46.4
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 6.4e-153 545.8 965 41.0
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 8.4e-153 545.4 951 42.9
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 4.1e-152 543.1 956 43.1
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 4.1e-152 543.1 962 40.2
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 4.1e-152 543.1 944 42.3
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 7.1e-152 542.3 983 41.7
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.1e-151 540.8 967 40.1
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 3.5e-151 540.0 826 46.4
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.0e-150 538.5 1005 39.4
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.3e-150 538.1 948 41.5
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 2.3e-150 537.3 980 40.4
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 3.0e-150 537.0 972 42.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 3.0e-150 537.0 952 42.0
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 6.6e-150 535.8 967 41.6
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.1e-149 535.0 959 41.7
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-149 533.9 975 41.8
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 2.5e-149 533.9 838 45.3
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 5.6e-149 532.7 994 40.4
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 9.6e-149 531.9 935 42.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 9.6e-149 531.9 831 45.2
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 4.7e-148 529.6 975 41.8
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.1e-148 528.9 1012 39.1
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 8.1e-148 528.9 950 41.4
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.1e-147 528.5 802 46.6
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.1e-147 528.5 1008 39.9
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.8e-147 527.7 945 42.0
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 8.9e-147 525.4 806 45.8
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.2e-146 525.0 965 40.4
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 2.0e-146 524.2 973 40.0
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 3.4e-146 523.5 945 41.2
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 5.8e-146 522.7 991 40.3
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.7e-145 521.2 822 44.4
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-145 521.2 1004 38.8
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.2e-145 520.8 941 41.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 4.9e-145 519.6 958 40.5
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 1.1e-144 518.5 825 44.1
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.4e-144 517.3 957 41.1
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.2e-143 515.0 982 38.9
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 6.0e-143 512.7 834 42.8
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.0e-142 511.9 842 43.1
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.1e-141 508.4 964 40.6
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.6e-140 504.6 1024 39.4
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 4.8e-140 503.1 946 41.0
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 8.1e-140 502.3 870 41.7
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.1e-139 501.9 968 40.6
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.2e-138 498.4 985 41.7
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.5e-138 498.0 936 40.1
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 2.0e-138 497.7 947 40.2
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.0e-138 497.7 945 41.1
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.0e-138 497.7 1116 37.7
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 3.4e-138 496.9 834 42.4
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 5.8e-138 496.1 945 40.8
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 7.6e-138 495.7 950 39.1
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 9.9e-138 495.4 975 39.6
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.2e-137 494.2 945 40.7
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 4.2e-136 490.0 833 41.1
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 4.2e-136 490.0 833 41.1
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 5.4e-136 489.6 1022 39.2
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 7.1e-136 489.2 955 39.6
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.6e-135 488.0 1070 37.2
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 2.7e-135 487.3 953 39.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 7.9e-135 485.7 955 40.0
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.3e-134 484.2 1061 37.9
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.9e-133 481.1 938 38.4
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.9e-133 481.1 946 39.1
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 3.3e-133 480.3 939 40.3
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 7.4e-133 479.2 801 42.2
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.1e-132 477.6 1054 37.2
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 6.2e-132 476.1 951 38.6
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.4e-131 474.9 981 38.5
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.8e-131 474.6 942 38.6
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 4.0e-131 473.4 1050 37.8
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 5.3e-131 473.0 936 38.1
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 5.3e-131 473.0 951 38.9
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 5.3e-131 473.0 1017 38.0
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.0e-130 471.1 947 37.7
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 8.4e-129 465.7 812 41.6
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.9e-128 464.5 845 41.1
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 7.1e-128 462.6 904 39.0
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 9.3e-128 462.2 859 39.2
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.6e-127 461.5 833 41.3
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 2.7e-127 460.7 897 38.1
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.3e-126 457.6 854 41.9
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-125 454.9 837 40.6
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.9e-125 454.5 827 41.0
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.6e-124 451.4 968 37.9
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 2.1e-124 451.1 879 39.0
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.8e-123 448.0 867 40.0
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.8e-123 448.0 867 40.0
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.6e-122 444.1 910 37.8
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 4.2e-120 436.8 962 36.9
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 6.0e-119 433.0 942 36.7
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.3e-117 427.2 932 36.9
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.3e-116 425.2 786 39.4
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.3e-116 425.2 838 37.5
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 3.6e-111 407.1 838 36.2
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 2.0e-90 338.2 944 33.8
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 5.9e-90 336.7 811 35.3
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.1e-85 322.4 934 33.3
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.1e-85 322.4 927 33.2
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 2.6e-85 321.2 900 32.6
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 9.7e-85 319.3 834 33.2
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 9.7e-85 319.3 834 33.2
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 3.2e-80 304.3 809 32.1
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.3e-73 282.3 564 39.2
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 3.2e-72 277.7 675 33.5
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.1e-67 262.7 382 45.5
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-60 239.2 286 48.3
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.1e-56 226.1 350 43.4
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 5.8e-53 213.8 965 25.2
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 7.0e-51 206.8 380 41.8
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.6e-50 204.1 390 39.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 1.8e-46 192.2 404 36.6
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.1e-40 172.9 260 41.9
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 2.5e-40 171.8 381 37.0
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-38 165.6 260 43.1
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 4.4e-29 134.4 169 49.7
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 3.8e-28 131.3 133 58.6
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.1e-27 127.1 92 66.3
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 5.6e-24 117.5 251 35.9
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 1.4e-22 112.8 499 28.9
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 2.0e-21 109.0 160 42.5
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.5e-21 107.8 209 39.7
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 5.8e-21 107.5 220 36.8
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 5.4e-19 100.9 111 52.3
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.0e-17 96.7 89 50.6
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 4.3e-16 91.3 89 48.3
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.6e-16 90.9 189 38.6
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 3.4e-13 81.6 122 42.6
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 2.2e-12 79.0 72 56.9
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.4e-11 76.3 102 41.2
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 4.2e-11 74.7 57 61.4
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 5.5e-11 74.3 59 57.6
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 7.1e-11 73.9 79 53.2
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 7.1e-11 73.9 79 53.2
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-10 72.8 105 41.9
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 6.0e-10 70.9 62 58.1
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 1.0e-09 70.1 113 39.8
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.8e-09 69.3 70 44.3
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.3e-09 68.9 126 34.9
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 3.9e-09 68.2 62 56.5
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 5.1e-09 67.8 127 37.8
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.1e-08 66.6 97 42.3
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.6e-07 62.8 94 43.6
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.8e-07 61.2 55 69.1
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 1.8e-06 59.3 60 48.3
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 2.4e-06 58.9 107 36.4


User provided reference genes

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