Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.4e-109 399.8 235 100.0
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 4.3e-58 228.8 198 65.7
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.5e-50 203.8 211 57.8
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 2.2e-38 163.3 160 61.2
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.5e-37 160.6 207 52.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 4.7e-36 155.6 198 48.0
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.6e-31 140.6 191 50.3
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.4e-24 117.5 193 48.2
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 1.6e-23 114.0 189 40.7
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.6e-23 114.0 189 40.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 3.5e-23 112.8 177 40.1
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 7.7e-23 111.7 198 40.9
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 2.9e-22 109.8 195 42.1
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.5e-21 107.5 201 39.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.5e-21 107.5 187 39.0
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.3e-21 105.9 211 38.4
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 9.5e-21 104.8 211 38.9
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.2e-20 104.4 177 41.8
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.6e-20 104.0 203 37.4
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.6e-20 104.0 178 39.9
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.1e-20 103.6 188 41.5
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 4.7e-20 102.4 196 40.8
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 4.0e-19 99.4 197 41.6
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.8e-19 98.6 179 39.7
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.5e-18 97.4 194 38.1
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 2.0e-18 97.1 191 39.8
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.6e-18 96.7 211 44.1
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 3.4e-18 96.3 178 46.6
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.4e-18 96.3 202 39.1
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.4e-18 96.3 198 37.9
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 5.7e-18 95.5 200 38.5
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 7.5e-18 95.1 204 35.8
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-17 94.4 200 37.5
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.7e-17 94.0 180 40.0
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.7e-17 94.0 200 37.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.2e-17 93.6 188 39.9
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 3.7e-17 92.8 187 40.6
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 3.7e-17 92.8 211 34.6
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.1e-16 91.3 201 35.3
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.4e-16 90.9 192 37.5
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.4e-16 90.9 197 37.6
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-16 90.5 200 34.5
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.8e-16 90.5 200 34.5
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.8e-16 90.5 175 37.7
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.4e-16 90.1 210 36.2
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 3.2e-16 89.7 188 38.8
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 3.2e-16 89.7 211 36.5
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.2e-16 89.7 221 33.0
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 7.0e-16 88.6 192 39.1
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.0e-16 88.6 176 38.1
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.2e-15 87.8 193 37.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.6e-15 87.4 214 34.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 2.0e-15 87.0 178 33.7
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 2.7e-15 86.7 188 38.8
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.7e-15 86.7 211 34.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 2.7e-15 86.7 181 37.6
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 3.5e-15 86.3 187 34.2
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.5e-15 86.3 186 36.0
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.5e-15 86.3 186 36.0
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 3.5e-15 86.3 181 34.8
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 3.5e-15 86.3 194 35.1
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 3.5e-15 86.3 143 44.1
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.5e-15 86.3 196 35.7
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.9e-15 85.5 186 38.2
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 7.8e-15 85.1 198 33.8
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.0e-14 84.7 185 35.7
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.0e-14 84.7 167 34.1
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.0e-14 83.2 185 39.5
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 3.9e-14 82.8 175 37.1
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.0e-14 82.4 189 35.4
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 5.0e-14 82.4 173 37.0
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 8.6e-14 81.6 172 33.1
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 8.6e-14 81.6 185 37.8
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.5e-13 80.9 170 33.5
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.5e-13 80.9 171 34.5
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 2.5e-13 80.1 193 32.6
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.5e-13 80.1 197 37.1
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 3.3e-13 79.7 200 34.5
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 4.3e-13 79.3 169 40.8
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 4.3e-13 79.3 173 38.2
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 9.5e-13 78.2 165 38.8
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-12 77.8 204 31.9
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.6e-12 77.4 175 36.6
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.6e-12 77.4 170 37.1
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 2.1e-12 77.0 179 35.2
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.1e-12 77.0 201 33.8
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.8e-12 76.6 191 36.6
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 3.6e-12 76.3 149 44.3
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.6e-12 76.3 175 37.1
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 4.7e-12 75.9 175 36.0
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 6.2e-12 75.5 149 42.3
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 8.0e-12 75.1 178 37.1
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 8.0e-12 75.1 184 33.7
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.8e-11 73.9 190 34.7
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 4.0e-11 72.8 189 33.9
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 6.8e-11 72.0 167 35.3
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 1.2e-10 71.2 172 33.7
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 2.6e-10 70.1 151 39.7
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.6e-10 70.1 53 64.2
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 3.4e-10 69.7 180 34.4
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 4.4e-10 69.3 179 31.8
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 4.4e-10 69.3 163 37.4
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 7.5e-10 68.6 190 32.6
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.3e-09 67.8 167 34.1
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.7e-09 67.4 186 37.1
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.7e-09 67.4 161 31.7
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 2.2e-09 67.0 186 32.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 2.2e-09 67.0 186 32.3
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 2.2e-09 67.0 180 35.0
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 2.9e-09 66.6 184 32.1
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 3.7e-09 66.2 203 32.5
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 4.9e-09 65.9 210 31.9
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 8.3e-09 65.1 153 34.6
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.4e-08 64.3 194 31.4
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.4e-08 64.3 178 31.5
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 1.4e-08 64.3 189 32.3
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 1.9e-08 63.9 72 48.6
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.4e-08 63.5 161 34.8
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 2.4e-08 63.5 164 36.6
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.4e-08 63.5 161 34.8
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 3.2e-08 63.2 177 31.1
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 3.2e-08 63.2 164 34.8
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 4.1e-08 62.8 159 34.6
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 7.0e-08 62.0 52 59.6
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.0e-08 62.0 172 35.5
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 9.2e-08 61.6 155 34.8
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 9.2e-08 61.6 155 34.8
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.6e-07 60.8 199 41.7
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.0e-07 60.5 189 31.2
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.7e-07 60.1 178 33.7
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 3.5e-07 59.7 188 30.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 4.6e-07 59.3 52 59.6
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.0e-06 58.2 194 26.8
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.7e-06 57.4 179 33.5
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 2.3e-06 57.0 173 31.8
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 5.0e-06 55.8 42 66.7


User provided reference genes

Program Settings