Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 4.8e-191 671.0 341 100.0
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.1e-154 549.3 344 81.4
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 3.2e-142 508.8 340 75.3
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 8.6e-140 500.7 347 73.5
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 6.8e-121 438.0 346 64.2
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 9.9e-120 434.1 343 63.6
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 1.1e-118 430.6 335 66.0
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 1.4e-118 430.3 333 67.0
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.9e-118 429.9 330 64.5
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 2.4e-118 429.5 339 63.7
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 3.2e-118 429.1 344 64.0
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 3.2e-118 429.1 335 65.1
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 5.4e-118 428.3 347 62.8
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.6e-117 426.8 331 64.4
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 3.5e-117 425.6 341 64.2
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 3.5e-117 425.6 314 65.6
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 4.6e-117 425.2 337 64.4
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 4.6e-117 425.2 336 64.0
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 4.6e-117 425.2 336 64.0
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 3.0e-116 422.5 336 63.1
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.0e-116 422.5 335 63.6
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 6.6e-116 421.4 341 62.2
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 8.7e-116 421.0 315 67.0
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 1.1e-115 420.6 341 63.9
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 1.9e-115 419.9 341 63.3
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 1.9e-115 419.9 320 64.7
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 2.5e-115 419.5 336 62.5
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.5e-115 419.5 334 63.8
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 3.3e-115 419.1 319 65.5
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 4.3e-115 418.7 346 63.3
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 5.6e-115 418.3 346 62.4
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 5.6e-115 418.3 309 65.4
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 5.6e-115 418.3 337 62.6
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 9.6e-115 417.5 360 58.1
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.6e-115 417.5 341 63.6
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.6e-114 416.8 314 66.9
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.1e-114 416.4 323 65.0
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.1e-114 416.4 337 62.3
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 3.6e-114 415.6 346 62.4
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 3.6e-114 415.6 338 61.5
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 4.8e-114 415.2 339 63.1
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.8e-114 415.2 333 62.8
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.8e-114 415.2 346 61.8
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 6.2e-114 414.8 346 61.0
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 1.8e-113 413.3 345 61.7
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.8e-113 413.3 343 63.0
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.8e-113 413.3 344 61.6
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 2.4e-113 412.9 345 61.4
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.4e-113 412.9 345 62.3
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 2.0e-112 409.8 335 60.9
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 4.4e-112 408.7 347 61.1
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 4.4e-112 408.7 340 62.9
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 5.8e-112 408.3 345 61.7
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 9.9e-112 407.5 346 61.8
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.3e-111 407.1 345 60.6
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.9e-111 405.2 343 58.9
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 6.4e-111 404.8 339 61.4
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 6.4e-111 404.8 312 65.4
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 6.4e-111 404.8 345 61.2
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 6.4e-111 404.8 344 61.0
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 8.4e-111 404.4 352 58.0
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 8.4e-111 404.4 346 60.7
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 8.4e-111 404.4 343 60.1
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.1e-110 404.1 340 59.7
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.4e-110 403.7 348 60.3
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.9e-110 403.3 338 60.1
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 4.2e-110 402.1 345 60.0
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 7.1e-110 401.4 320 64.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-109 400.6 352 59.9
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.6e-109 400.2 339 61.4
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 4.6e-109 398.7 340 61.5
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 6.0e-109 398.3 336 61.0
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-108 397.5 346 59.8
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-108 397.5 346 59.8
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.0e-108 397.5 338 58.9
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.3e-108 397.1 340 61.2
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.7e-108 396.7 328 61.9
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 2.3e-108 396.4 346 59.8
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 2.3e-108 396.4 346 59.8
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.9e-107 393.3 338 60.9
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.5e-107 392.9 347 59.4
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.5e-107 392.9 347 59.4
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.5e-107 392.9 347 59.4
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 9.6e-107 391.0 347 57.3
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 1.4e-105 387.1 339 57.8
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.1e-105 386.0 336 57.7
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 4.0e-105 385.6 340 56.5
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 4.9e-103 378.6 337 59.1
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.9e-102 376.7 336 58.6
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 4.2e-102 375.6 339 59.0
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 7.9e-101 371.3 333 56.5
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 3.3e-99 365.9 310 58.4
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.3e-98 364.0 336 55.1
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.3e-98 364.0 336 55.1
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 2.1e-98 363.2 345 55.9
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 4.8e-98 362.1 310 61.9
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 8.1e-98 361.3 328 57.0
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.1e-97 359.4 266 65.8
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 3.1e-97 359.4 339 55.8
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.3e-97 358.6 313 57.2
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.9e-95 352.1 304 58.6
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 6.5e-95 351.7 312 60.6
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 6.5e-95 351.7 331 55.0
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.1e-94 350.9 342 55.3
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.2e-94 349.4 332 54.5
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.2e-94 349.0 344 54.4
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 9.3e-94 347.8 308 57.1
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.6e-93 347.1 331 54.1
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.6e-93 347.1 254 66.5
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 2.1e-93 346.7 332 53.6
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.1e-93 346.7 323 56.0
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 2.7e-93 346.3 325 55.7
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 3.5e-93 345.9 339 54.9
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 7.9e-93 344.7 344 53.8
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.0e-92 344.4 321 57.0
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.8e-92 343.6 190 86.8
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 3.0e-92 342.8 323 55.4
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.9e-92 342.4 331 53.2
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.5e-91 340.5 340 51.2
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.1e-90 336.7 318 55.7
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 4.8e-90 335.5 330 53.6
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 1.0e-87 327.8 332 53.6
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 1.7e-87 327.0 333 50.5
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.0e-87 325.5 339 51.9
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 5.0e-87 325.5 343 51.3
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.0e-84 317.8 339 51.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.7e-83 312.0 328 51.5
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.3e-82 310.8 312 50.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 8.2e-82 308.1 277 57.0
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.4e-81 307.4 399 43.9
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.6e-80 303.1 294 56.8
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 5.9e-80 302.0 337 47.8
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 7.7e-80 301.6 324 47.8
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 2.9e-79 299.7 323 47.7
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.9e-79 299.7 323 47.7
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 6.5e-79 298.5 335 49.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.5e-79 298.5 313 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.1e-78 297.7 336 47.6
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.4e-78 297.4 325 47.4
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.4e-78 297.4 325 47.4
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 2.1e-77 293.5 273 55.7
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 4.6e-77 292.4 334 43.7
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.5e-75 287.3 322 46.3
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.8e-74 283.1 325 46.5
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.2e-74 281.6 220 62.7
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 1.1e-73 281.2 254 56.7
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-73 280.8 309 48.5
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.1e-73 279.6 177 70.1
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 2.9e-71 273.1 190 68.4
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.6e-69 267.3 189 66.1
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.8e-68 263.8 189 66.1
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.6e-67 260.0 189 64.6
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 1.1e-62 244.6 230 54.3
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 4.2e-62 242.7 321 44.2
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.2e-62 242.7 183 65.0
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.2e-56 224.6 190 56.8
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.2e-54 215.3 184 57.1
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 3.5e-48 196.4 332 37.0
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 3.5e-48 196.4 229 48.9
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.3e-47 194.5 325 39.1
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 1.7e-47 194.1 224 50.9
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.2e-40 171.4 169 54.4
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 3.8e-39 166.4 167 55.1
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-33 148.3 172 46.5
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 9.2e-33 145.2 104 70.2
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.5e-30 137.9 92 69.6
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 1.2e-27 128.3 158 48.7
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 1.7e-26 124.4 95 64.2
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 1.6e-24 117.9 89 60.7
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 6.0e-24 115.9 335 29.6
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 6.6e-23 112.5 75 68.0
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.0e-19 100.9 81 53.1
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 3.4e-19 100.1 80 55.0
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 1.3e-18 98.2 75 68.0
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 8.3e-18 95.5 76 56.6
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 1.1e-14 85.1 57 70.2
SMO351G0034 Selaginella moellendorffii HOM05D003755 ORTHO05D376906 3.3e-14 83.6 326 27.6
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.2e-13 81.6 49 77.6
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 1.1e-12 78.6 74 58.1
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-09 68.6 66 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 7.8e-08 62.4 70 45.7
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 8.6e-07 58.9 83 44.6


User provided reference genes

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