Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.6e-54 216.1 130 100.0
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 3.3e-31 138.7 132 68.9
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 5.1e-16 88.2 129 41.9
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 7.3e-15 84.3 132 39.4
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.6e-14 83.2 127 37.8
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.8e-14 82.4 130 52.3
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 3.6e-14 82.0 130 39.2
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 6.2e-14 81.3 127 42.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 1.1e-13 80.5 130 40.0
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.8e-13 79.7 128 40.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.8e-13 79.7 129 41.1
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 1.8e-13 79.7 130 40.0
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 3.1e-13 79.0 134 37.3
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 4.0e-13 78.6 129 41.1
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 4.0e-13 78.6 129 40.3
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 5.3e-13 78.2 129 39.5
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 6.9e-13 77.8 134 36.6
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 6.9e-13 77.8 131 38.2
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.2e-12 77.0 127 39.4
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.5e-12 76.6 131 39.7
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 3.4e-12 75.5 131 38.9
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 4.4e-12 75.1 133 36.1
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 5.8e-12 74.7 130 38.5
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 7.6e-12 74.3 134 39.6
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.6e-12 74.3 133 38.3
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 9.9e-12 73.9 133 38.3
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.7e-11 73.2 131 38.9
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.2e-11 72.8 128 36.7
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 2.9e-11 72.4 130 38.5
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 3.8e-11 72.0 131 38.9
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 3.8e-11 72.0 131 37.4
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.9e-11 71.6 130 36.2
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.9e-11 71.6 130 36.2
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 4.9e-11 71.6 129 42.6
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 6.4e-11 71.2 129 38.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.1e-10 70.5 130 34.6
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.1e-10 70.5 130 37.7
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 1.1e-10 70.5 131 39.7
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.9e-10 69.7 131 36.6
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.4e-10 69.3 130 36.9
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 3.2e-10 68.9 122 36.1
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.2e-10 68.9 131 34.4
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 3.2e-10 68.9 130 36.2
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 4.2e-10 68.6 122 36.9
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 5.4e-10 68.2 129 47.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 7.1e-10 67.8 122 46.7
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 7.1e-10 67.8 133 38.3
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 7.1e-10 67.8 127 37.8
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-09 67.0 128 38.3
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.2e-09 67.0 128 36.7
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.2e-09 67.0 131 33.6
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.2e-09 67.0 131 33.6
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.6e-09 66.6 127 40.2
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.6e-09 66.6 129 36.4
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.1e-09 66.2 125 36.8
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.1e-09 66.2 131 35.1
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.1e-09 66.2 130 36.9
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.1e-09 66.2 127 36.2
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 2.7e-09 65.9 126 35.7
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.7e-09 65.9 130 36.9
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 2.7e-09 65.9 131 37.4
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 3.5e-09 65.5 123 48.0
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 3.5e-09 65.5 126 35.7
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 4.6e-09 65.1 131 36.6
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 4.6e-09 65.1 136 32.4
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 4.6e-09 65.1 122 41.8
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 6.0e-09 64.7 131 34.4
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 7.8e-09 64.3 133 38.3
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 7.8e-09 64.3 131 35.9
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 7.8e-09 64.3 130 36.9
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.8e-09 64.3 128 35.2
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.8e-09 64.3 128 35.2
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.0e-08 63.9 128 37.5
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.0e-08 63.9 128 37.5
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.0e-08 63.9 135 34.1
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.3e-08 63.5 133 33.8
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.3e-08 63.5 126 35.7
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.3e-08 63.5 129 47.3
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.7e-08 63.2 130 36.9
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.3e-08 62.8 131 36.6
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 2.3e-08 62.8 125 35.2
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.3e-08 62.8 130 36.9
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.3e-08 62.8 128 35.9
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.3e-08 62.8 129 38.0
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.3e-08 62.8 130 34.6
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.0e-08 62.4 131 32.8
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 3.0e-08 62.4 126 38.1
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 3.9e-08 62.0 122 33.6
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 3.9e-08 62.0 131 35.9
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 5.1e-08 61.6 131 36.6
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 5.1e-08 61.6 122 34.4
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 6.6e-08 61.2 131 34.4
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 8.7e-08 60.8 131 35.9
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 8.7e-08 60.8 123 45.5
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.1e-07 60.5 131 35.1
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.1e-07 60.5 128 32.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.1e-07 60.5 131 35.9
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.1e-07 60.5 125 32.8
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.5e-07 60.1 131 32.1
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.5e-07 60.1 125 32.8
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 1.5e-07 60.1 130 34.6
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.9e-07 59.7 131 33.6
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 2.5e-07 59.3 123 46.3
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 2.5e-07 59.3 123 46.3
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 2.5e-07 59.3 123 46.3
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.5e-07 59.3 143 34.3
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 5.6e-07 58.2 125 36.0
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 9.6e-07 57.4 125 45.6
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.3e-06 57.0 129 34.1
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.6e-06 56.6 126 34.9
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.6e-06 56.6 125 33.6
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.1e-06 56.2 131 33.6
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.8e-06 55.8 118 36.4
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.6e-06 55.5 118 35.6
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.8e-06 55.1 130 32.3
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.8e-06 55.1 130 32.3
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 4.8e-06 55.1 127 36.2
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 6.2e-06 54.7 125 44.0
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 8.1e-06 54.3 124 35.5


User provided reference genes

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