Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 0.0e+00 1988.4 1121 100.0
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 0.0e+00 1316.6 1243 65.4
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 0.0e+00 1313.5 1244 65.6
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1157.1 1348 53.3
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1137.5 1294 57.8
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 1.0e-290 1003.8 1304 52.9
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 1.4e-266 923.7 1272 49.0
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 3.6e-259 899.0 1541 43.0
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 2.6e-257 892.9 1430 45.7
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 1.9e-252 876.7 1337 44.6
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 5.5e-252 875.2 1430 42.7
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 2.3e-250 869.8 1422 43.0
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 8.2e-248 861.3 1372 41.5
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 7.0e-247 858.2 1411 40.0
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 7.7e-246 854.7 1389 44.1
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 6.5e-245 851.7 1411 44.1
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 1.5e-244 850.5 1365 45.3
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 5.5e-244 848.6 1379 45.5
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 8.0e-243 844.7 1370 46.1
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 8.0e-243 844.7 1278 46.6
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 1.4e-242 844.0 1409 44.6
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 5.2e-242 842.0 1424 40.9
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 1.4e-239 833.9 1502 39.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 1.8e-239 833.6 1354 40.9
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 2.4e-239 833.2 1440 42.5
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 2.4e-239 833.2 1373 45.5
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 1.9e-236 823.5 1361 44.8
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.2e-236 822.8 1228 45.0
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 3.2e-236 822.8 1390 44.2
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 1.0e-234 817.8 1382 42.5
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 5.2e-234 815.5 1346 42.9
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 8.8e-234 814.7 1369 44.6
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 5.7e-233 812.0 1535 40.4
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.8e-231 807.0 1390 43.4
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 4.5e-230 802.4 1360 40.4
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 5.9e-230 802.0 1288 44.6
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 5.9e-230 802.0 1361 40.3
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 5.0e-229 798.9 1379 45.4
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 1.5e-228 797.3 1408 41.7
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 2.8e-227 793.1 1503 40.2
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.6e-227 792.7 1347 39.6
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 3.6e-227 792.7 1381 43.2
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 2.0e-225 786.9 1287 41.3
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 3.4e-225 786.2 1534 38.7
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 5.7e-225 785.4 1387 41.7
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 9.8e-225 784.6 1285 43.0
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 1.3e-224 784.3 1496 37.7
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.7e-224 782.7 1332 39.6
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 1.1e-223 781.2 1498 41.6
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 2.4e-223 780.0 1345 40.7
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 2.0e-222 776.9 1511 37.8
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 3.9e-221 772.7 1333 42.8
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 6.6e-221 771.9 1375 42.7
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 1.1e-220 771.2 1371 40.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 2.8e-219 766.5 1365 40.3
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 8.0e-219 765.0 1358 40.0
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 2.6e-217 760.0 1503 40.1
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 3.4e-217 759.6 1261 42.7
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 3.4e-217 759.6 1551 38.2
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 2.2e-216 756.9 1356 41.4
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 3.7e-216 756.1 1561 38.3
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 4.1e-215 752.7 1483 41.2
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 5.4e-215 752.3 1355 42.1
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 3.9e-213 746.1 1497 36.3
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 6.6e-213 745.3 1491 36.9
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 6.6e-213 745.3 1475 38.6
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 5.6e-212 742.3 1406 38.2
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 5.6e-212 742.3 1438 38.6
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 7.3e-212 741.9 1452 38.8
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 4.7e-211 739.2 1466 41.7
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 7.5e-209 731.9 1588 35.7
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.9e-207 727.2 1539 40.6
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 5.1e-205 719.2 1520 35.9
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 9.5e-204 714.9 1299 41.0
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.8e-202 710.7 1311 44.2
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 4.3e-196 689.5 1334 41.4
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.6e-195 686.4 1780 34.7
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 8.1e-195 685.3 1396 41.1
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 3.2e-191 673.3 1563 37.6
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 6.0e-190 669.1 1256 38.5
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.3e-188 663.3 1148 42.2
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 9.6e-188 661.8 1435 40.3
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 7.6e-185 652.1 1373 38.2
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.2e-183 646.7 813 49.4
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 4.6e-182 642.9 1449 38.4
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.3e-173 614.8 749 49.3
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.5e-172 610.5 1128 40.2
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.6e-171 607.8 780 46.7
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 5.8e-169 599.4 876 44.2
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 2.3e-165 587.4 889 44.3
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 2.9e-144 517.3 1260 32.0
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 4.7e-142 510.0 1212 35.8
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 2.2e-139 501.1 730 43.0
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 2.3e-125 454.5 833 42.7
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.2e-124 452.2 926 35.7
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.9e-115 420.2 1172 34.9
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 1.3e-112 412.1 581 43.5
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.4e-108 397.5 1175 29.0
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.5e-108 396.4 693 37.8
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.9e-104 384.0 1239 29.8
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.3e-99 369.0 536 43.8
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 7.0e-98 363.2 1119 29.5
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.6e-97 360.5 676 34.6
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.0e-88 332.8 452 53.5
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.8e-85 322.0 502 41.6
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 6.8e-85 320.1 314 58.9
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.4e-84 317.4 483 44.9
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.2e-76 292.7 307 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 7.1e-66 256.9 1154 27.8
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 7.1e-66 256.9 364 40.7
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 4.8e-62 244.2 314 43.3
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 8.1e-62 243.4 1198 29.1
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.7e-59 235.7 1092 27.8
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.3e-55 221.5 239 49.0
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 1.3e-54 219.5 435 37.2
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.8e-54 218.4 235 51.9
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.8e-54 218.4 247 50.6
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.2e-54 217.2 249 45.4
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.6e-49 201.1 654 28.6
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.9e-47 195.7 156 64.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.2e-46 190.3 270 43.7
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 8.8e-40 170.2 235 51.1
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.2e-38 163.7 232 37.9
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.0e-35 156.8 152 55.9
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.2e-33 149.8 127 61.4
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.1e-29 135.2 393 29.5
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 1.7e-27 129.4 153 48.4
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.0e-25 120.6 99 61.6
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-23 116.7 601 24.1
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 4.8e-22 111.3 296 27.7
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 4.5e-20 104.8 209 31.6
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.7e-19 102.8 98 53.1
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 3.8e-19 101.7 179 38.0
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-18 98.2 376 23.7
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.7e-12 77.4 65 60.0
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 2.1e-09 69.3 124 35.5
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 7.5e-07 60.8 45 62.2
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 7.5e-07 60.8 59 50.8
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.3e-06 60.1 235 27.2


User provided reference genes

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