Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g234130 Amaranthus hybridus HOM05D044380 ORTHO05D000517 2.4e-122 442.2 230 100.0
Ah.01g004940 Amaranthus hybridus HOM05D044380 ORTHO05D062153 4.3e-18 95.9 63 85.7
Ah.01g006090 Amaranthus hybridus HOM05D000240 ORTHO05D001153 6.9e-08 62.0 37 75.7
Ah.01g018940 Amaranthus hybridus HOM05D000240 ORTHO05D001153 1.5e-07 60.8 37 75.7
AUR62010414 Chenopodium quinoa HOM05D000240 ORTHO05D001153 3.4e-07 59.7 37 70.3
AUR62016802 Chenopodium quinoa HOM05D000240 ORTHO05D001153 3.4e-07 59.7 37 70.3
Sc08g0000780 Simmondsia chinensis HOM05D000240 ORTHO05D001153 5.8e-07 58.9 37 73.0
Sc18g0005290 Simmondsia chinensis HOM05D000240 ORTHO05D001153 5.8e-07 58.9 37 70.3
FAN03G0876 Fragaria x ananassa HOM05D000482 ORTHO05D000349 7.6e-07 58.5 41 58.5
Lalb_Chr08g0239921 Lupinus albus HOM05D000634 ORTHO05D000517 7.6e-07 58.5 39 66.7
COL.COLO4_14337 Corchorus olitorius HOM05D000634 ORTHO05D000517 1.0e-06 58.2 31 80.6
SGA_v2.0_scaffold58G20477 Striga asiatica HOM05D000240 ORTHO05D001153 1.0e-06 58.2 40 65.0
TAR374G0170 Trochodendron aralioides HOM05D000482 ORTHO05D000349 1.7e-06 57.4 46 54.3
Atru.chr12.2330 Acer truncatum HOM05D000634 ORTHO05D000517 2.2e-06 57.0 31 71.0
Gohir.D03G116500 Gossypium hirsutum HOM05D000634 ORTHO05D000517 2.2e-06 57.0 37 67.6
Medtr4g071210 Medicago truncatula HOM05D000240 ORTHO05D001153 2.2e-06 57.0 55 50.9
EL10Ac3g05215 Beta vulgaris HOM05D000634 ORTHO05D000517 2.9e-06 56.6 31 77.4
BcaB03g12238 Brassica carinata HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
BcaC01g00275 Brassica carinata HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
BcaNung01285 Brassica carinata HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
BcaNung01942 Brassica carinata HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
A06p48710 Brassica napus HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
A08p23880 Brassica napus HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
C03p77550 Brassica napus HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
C07p63370 Brassica napus HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
BolC3t20011H Brassica oleracea HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
BolC7t46748H Brassica oleracea HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
BraA06t27737Z Brassica rapa HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
BraA08t34340Z Brassica rapa HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
Hma1.2p1_0094F.1_g047110 Hydrangea macrophylla HOM05D000634 ORTHO05D000517 2.9e-06 56.6 31 74.2
Sp7g36780 Schrenkiella parvula HOM05D000240 ORTHO05D001153 2.9e-06 56.6 40 65.0
Solyc03g082600.4 Solanum lycopersicum HOM05D000634 ORTHO05D000517 2.9e-06 56.6 32 71.9
MSTRG.20054 Avicennia marina HOM05D000240 ORTHO05D001153 3.8e-06 56.2 37 64.9
EL10Ac9g21667 Beta vulgaris HOM05D000240 ORTHO05D001153 3.8e-06 56.2 37 67.6
AUR62035589 Chenopodium quinoa HOM05D000634 ORTHO05D000517 3.8e-06 56.2 31 74.2
Duzib084G0650 Durio zibethinus HOM05D000482 ORTHO05D000349 3.8e-06 56.2 31 71.0
Oeu008576.1 Olea europaea HOM05D000240 ORTHO05D001153 3.8e-06 56.2 40 60.0
Os04g0434600 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D001153 3.8e-06 56.2 55 52.7
Hund00225 Selenicereus undatus HOM05D000240 ORTHO05D001153 3.8e-06 56.2 37 64.9
TAR375G0617 Trochodendron aralioides HOM05D000634 ORTHO05D000517 3.8e-06 56.2 31 74.2
unitig_8.g3247 Utricularia gibba HOM05D000240 ORTHO05D001153 3.8e-06 56.2 37 67.6
arahy.Tifrunner.gnm1.ann1.DN52HN Arachis hypogaea HOM05D000240 ORTHO05D001153 4.9e-06 55.8 35 68.6
MSTRG.5420 Avicennia marina HOM05D000240 ORTHO05D001153 4.9e-06 55.8 40 57.5
AUR62006039 Chenopodium quinoa HOM05D000634 ORTHO05D000517 4.9e-06 55.8 31 74.2
Glyma.06G133300 Glycine max HOM05D000634 ORTHO05D000517 4.9e-06 55.8 31 74.2
Lalb_Chr03g0025401 Lupinus albus HOM05D000240 ORTHO05D001153 4.9e-06 55.8 37 64.9
MD01G1226000 Malus domestica HOM05D000634 ORTHO05D000517 4.9e-06 55.8 32 71.9
Nn5g29194 Nelumbo nucifera HOM05D000240 ORTHO05D001153 4.9e-06 55.8 37 67.6
Hund06267 Selenicereus undatus HOM05D000240 ORTHO05D001153 4.9e-06 55.8 37 64.9
Thecc.03G205300 Theobroma cacao HOM05D000634 ORTHO05D000517 4.9e-06 55.8 31 74.2
TPR.G16212 Trifolium pratense HOM05D000240 ORTHO05D001153 4.9e-06 55.8 55 49.1
CDE11G1111 Ceratophyllum demersum HOM05D000634 ORTHO05D000517 6.4e-06 55.5 31 71.0
Ciclev10027716m.g Citrus clementina HOM05D000240 ORTHO05D001153 6.4e-06 55.5 37 64.9
Dinv35367 Davidia involucrata HOM05D000634 ORTHO05D000517 6.4e-06 55.5 31 74.2
Duzib068G1345 Durio zibethinus HOM05D000634 ORTHO05D000517 6.4e-06 55.5 31 71.0
Migut.B00190 Erythranthe guttata HOM05D000240 ORTHO05D001153 6.4e-06 55.5 40 60.0
Glyma.06G009000 Glycine max HOM05D000240 ORTHO05D001153 6.4e-06 55.5 37 62.2
Gohir.A07G054600 Gossypium hirsutum HOM05D002569 ORTHO05D006728 6.4e-06 55.5 38 60.5
Gorai.003G122800 Gossypium raimondii HOM05D000634 ORTHO05D000517 6.4e-06 55.5 31 71.0
PSO782G0721 Papaver somniferum HOM05D000634 ORTHO05D000517 6.4e-06 55.5 31 74.2
Prupe.2G316100 Prunus persica HOM05D000634 ORTHO05D000517 6.4e-06 55.5 31 74.2
BraA05t22527Z Brassica rapa HOM05D000240 ORTHO05D001153 8.4e-06 55.1 39 61.5
CSS0006109 Camellia sinensis var. sinensis HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
Carub.0004s0041 Capsella rubella HOM05D000240 ORTHO05D001153 8.4e-06 55.1 40 62.5
Ca_15343_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 8.4e-06 55.1 37 62.2
Ca_20920_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 8.4e-06 55.1 37 62.2
Dinv02489 Davidia involucrata HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
Dinv23473 Davidia involucrata HOM05D000240 ORTHO05D001153 8.4e-06 55.1 37 62.2
Dinv29235 Davidia involucrata HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
FvH4_7g32530 Fragaria vesca HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
FAN01G2177 Fragaria x ananassa HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
FAN10G0551 Fragaria x ananassa HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
FAN10G4167 Fragaria x ananassa HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
Glyma.04G009100 Glycine max HOM05D000240 ORTHO05D001153 8.4e-06 55.1 37 62.2
Glyma.11G112700 Glycine max HOM05D000240 ORTHO05D001153 8.4e-06 55.1 37 62.2
Gohir.A07G164700 Gossypium hirsutum HOM05D002569 ORTHO05D006728 8.4e-06 55.1 31 74.2
Gohir.A12G247500 Gossypium hirsutum HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
Peaxi162Scf00740g00422 Petunia axillaris HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 71.0
Psat7g182360 Pisum sativum HOM05D000240 ORTHO05D001153 8.4e-06 55.1 37 62.2
Rhsim03G0212700 Rhododendron simsii HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 71.0
SGA_v2.0_scaffold18G08449 Striga asiatica HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 74.2
TPR.G33628 Trifolium pratense HOM05D000634 ORTHO05D000517 8.4e-06 55.1 31 71.0
VMungo1309G1100 Vigna mungo HOM05D000240 ORTHO05D001153 8.4e-06 55.1 37 62.2


User provided reference genes

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