Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.4e-185 651.7 380 100.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 4.2e-135 485.3 384 73.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.5e-113 413.7 395 71.4
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 7.7e-113 411.4 391 70.3
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.1e-110 403.3 390 68.2
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 9.1e-90 334.7 399 58.9
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 6.1e-70 268.9 347 56.2
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.4e-69 267.7 405 50.1
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 6.8e-69 265.4 392 48.0
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 5.7e-68 262.3 393 47.1
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 5.7e-68 262.3 402 51.5
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 5.7e-68 262.3 409 49.4
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.3e-67 258.8 401 48.4
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.1e-66 258.1 402 45.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 9.2e-66 255.0 405 45.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.7e-65 253.4 402 49.0
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 4.5e-65 252.7 346 49.4
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 5.9e-65 252.3 336 50.9
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.8e-65 251.9 347 48.7
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.0e-64 251.5 423 44.7
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 5.0e-64 249.2 393 46.3
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.6e-64 248.8 424 43.9
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 8.6e-64 248.4 385 46.8
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.5e-63 246.9 411 44.3
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 4.3e-63 246.1 394 43.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.8e-62 243.4 402 43.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 3.6e-62 243.0 403 44.4
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.6e-62 243.0 393 46.1
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 4.7e-62 242.7 403 46.7
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.4e-61 241.1 392 44.6
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.4e-61 241.1 326 48.5
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 3.1e-61 240.0 374 52.7
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 4.0e-61 239.6 393 43.5
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.2e-60 238.0 411 44.3
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.5e-60 237.7 328 49.4
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 5.8e-60 235.7 385 46.0
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 7.5e-60 235.3 389 45.2
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 7.5e-60 235.3 388 44.3
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-58 231.5 356 44.7
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 2.4e-58 230.3 382 44.8
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 2.4e-58 230.3 388 44.8
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 9.2e-58 228.4 390 44.6
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.2e-57 228.0 325 52.6
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.2e-57 228.0 410 41.0
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 2.0e-57 227.3 406 42.1
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.0e-56 224.9 320 47.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 3.9e-56 223.0 397 46.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 8.6e-56 221.9 394 40.6
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 8.6e-56 221.9 379 45.4
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.1e-55 221.5 387 49.9
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.5e-55 220.3 333 47.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 4.3e-55 219.5 424 42.2
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 7.3e-55 218.8 328 47.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 7.3e-55 218.8 393 43.8
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 9.5e-55 218.4 396 42.2
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.2e-54 218.0 347 49.0
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.8e-54 216.9 326 46.9
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.6e-54 216.5 330 44.2
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 3.6e-54 216.5 337 44.2
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.6e-54 216.5 388 48.5
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 3.6e-54 216.5 405 46.7
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.7e-54 216.1 409 41.1
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 8.0e-54 215.3 404 43.3
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 8.0e-54 215.3 403 45.9
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.1e-53 214.9 404 43.6
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.1e-53 214.9 403 46.7
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.1e-53 214.9 387 43.2
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.8e-53 214.2 330 43.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.3e-53 213.8 412 40.0
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 4.0e-53 213.0 420 38.6
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 6.8e-53 212.2 394 47.5
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.5e-52 211.1 330 43.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.0e-52 210.7 330 43.9
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.4e-52 209.5 330 43.3
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 4.4e-52 209.5 348 45.4
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 5.8e-52 209.1 305 52.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.3e-51 208.0 412 39.3
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.7e-51 207.6 330 43.6
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 4.9e-51 206.1 356 43.0
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 8.3e-51 205.3 349 43.0
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.7e-49 200.3 403 41.2
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-49 199.9 329 44.1
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.3e-48 197.2 392 39.5
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 3.9e-48 196.4 383 41.0
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.1e-47 194.9 384 41.7
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.5e-47 194.5 443 38.6
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.9e-47 194.1 339 42.8
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.5e-47 193.7 394 39.8
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 9.5e-47 191.8 443 39.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 6.8e-45 185.7 402 38.8
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 9.9e-44 181.8 403 37.0
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.9e-43 180.3 389 39.6
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.9e-42 177.6 299 43.5
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.4e-42 177.2 342 39.8
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 3.5e-41 173.3 400 36.5
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 4.6e-41 172.9 259 45.9
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.3e-40 170.6 377 38.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.3e-40 170.6 338 44.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 3.0e-40 170.2 379 38.8
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.9e-39 167.5 284 45.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.9e-39 167.5 374 38.2
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.5e-39 167.2 375 38.7
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.5e-39 167.2 280 44.6
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.5e-39 167.2 280 44.6
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 3.3e-39 166.8 321 39.3
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 5.6e-39 166.0 285 43.9
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 4.7e-38 162.9 376 37.5
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 6.2e-38 162.5 390 35.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.1e-37 161.8 369 37.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.1e-37 161.8 369 37.4
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.4e-37 160.6 369 37.1
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 3.1e-37 160.2 368 37.2
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.2e-37 159.5 357 36.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 8.9e-37 158.7 353 38.0
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.2e-36 158.3 389 37.8
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.6e-36 157.1 417 35.7
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 5.8e-36 156.0 329 44.7
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 5.8e-36 156.0 384 37.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 5.1e-32 142.9 284 43.0
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 9.6e-31 138.7 385 32.2
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 4.0e-29 133.3 179 49.2
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.9e-28 128.6 196 49.5
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.9e-28 128.6 196 49.5
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 3.8e-27 126.7 168 45.8
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.8e-25 119.0 200 47.5
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.1e-23 115.2 277 35.7
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 2.8e-22 110.5 173 49.1
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 8.1e-22 109.0 174 44.8
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 9.0e-21 105.5 118 55.1
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.9e-18 97.8 240 36.7
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.1e-17 94.4 274 33.6
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 4.6e-17 93.2 271 33.6
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.8e-16 91.3 219 33.3
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 3.3e-15 87.0 79 57.0
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 5.6e-15 86.3 389 28.5
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.1e-14 84.3 110 54.5
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 8.1e-14 82.4 190 34.2
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-13 82.0 196 38.8
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-13 82.0 196 38.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-13 81.6 196 38.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-13 81.6 196 37.8
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-13 80.5 196 38.3
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-13 80.1 196 38.3
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.5e-11 72.8 152 41.4
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.6e-09 68.2 81 54.3
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.6e-09 68.2 149 38.3
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-09 67.8 68 52.9
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 8.2e-06 55.8 41 73.2


User provided reference genes

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