Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 8.7e-128 460.3 230 100.0
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 4.2e-90 335.1 219 77.2
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.0e-75 287.3 227 63.0
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 7.2e-66 254.6 221 58.4
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 9.8e-63 244.2 199 62.3
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.5e-52 209.1 131 77.9
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.4e-47 192.2 158 62.0
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 8.6e-43 177.9 114 75.4
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.1e-42 177.6 118 75.4
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 1.5e-23 114.0 203 33.5
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 2.0e-23 113.6 170 36.5
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 2.2e-22 110.2 150 37.3
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 2.9e-22 109.8 198 33.8
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 2.9e-22 109.8 192 37.0
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 3.8e-22 109.4 150 37.3
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 8.4e-22 108.2 192 35.9
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 8.4e-22 108.2 150 36.0
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 8.4e-22 108.2 150 36.0
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 8.4e-22 108.2 150 36.0
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 8.4e-22 108.2 161 34.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.4e-21 107.5 205 36.6
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.4e-21 107.5 205 36.6
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.4e-21 107.5 150 36.7
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.9e-21 107.1 150 36.7
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.9e-21 107.1 178 34.8
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.9e-21 107.1 146 39.0
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.9e-21 107.1 150 36.7
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.9e-21 107.1 178 37.6
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.4e-21 106.7 205 36.1
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.2e-21 106.3 192 34.9
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 4.2e-21 105.9 145 38.6
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 7.1e-21 105.1 147 36.7
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 9.3e-21 104.8 150 36.0
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 1.2e-20 104.4 145 37.9
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.2e-20 104.4 146 37.7
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.6e-20 104.0 168 34.5
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.1e-20 103.6 145 37.2
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.1e-20 103.6 150 35.3
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.7e-20 103.2 152 33.6
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 2.7e-20 103.2 145 37.9
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.7e-20 103.2 146 37.7
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.7e-20 103.2 145 38.6
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 2.7e-20 103.2 145 38.6
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.7e-20 103.2 150 35.3
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 3.5e-20 102.8 195 33.8
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 3.5e-20 102.8 197 34.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.5e-20 102.8 194 34.0
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.6e-20 102.4 150 36.7
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 4.6e-20 102.4 146 37.7
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 4.6e-20 102.4 145 39.3
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 4.6e-20 102.4 150 37.3
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 4.6e-20 102.4 176 35.8
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 4.6e-20 102.4 172 34.9
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 6.0e-20 102.1 167 35.9
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 6.0e-20 102.1 150 37.3
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 6.0e-20 102.1 174 34.5
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 7.8e-20 101.7 198 33.3
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 7.8e-20 101.7 196 34.2
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 7.8e-20 101.7 146 37.0
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.0e-19 101.3 192 32.8
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.0e-19 101.3 150 35.3
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.3e-19 100.9 196 31.1
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.3e-19 100.9 196 35.2
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.3e-19 100.9 150 36.0
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.7e-19 100.5 196 31.1
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.7e-19 100.5 150 35.3
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 1.7e-19 100.5 145 37.9
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.7e-19 100.5 145 35.9
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.7e-19 100.5 168 32.7
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.3e-19 100.1 150 35.3
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 2.3e-19 100.1 147 35.4
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.0e-19 99.8 146 36.3
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 3.9e-19 99.4 147 35.4
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 3.9e-19 99.4 145 36.6
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 3.9e-19 99.4 145 36.6
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 5.1e-19 99.0 147 34.7
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 5.1e-19 99.0 146 37.7
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.6e-19 98.6 147 34.0
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 6.6e-19 98.6 195 31.3
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 6.6e-19 98.6 147 34.7
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 8.7e-19 98.2 149 34.2
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 8.7e-19 98.2 149 34.2
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 8.7e-19 98.2 150 36.0
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.1e-18 97.8 172 32.0
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 1.5e-18 97.4 172 32.0
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.5e-18 97.4 150 35.3
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-18 97.1 147 34.0
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-18 97.1 147 34.0
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-18 97.1 147 34.0
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.9e-18 97.1 147 34.0
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.9e-18 97.1 147 34.0
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.9e-18 97.1 147 34.0
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 2.5e-18 96.7 145 37.2
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.5e-18 96.7 146 34.9
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 3.3e-18 96.3 163 35.0
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.3e-18 96.3 147 34.0
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.3e-18 96.3 150 35.3
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 3.3e-18 96.3 146 34.2
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 4.3e-18 95.9 150 35.3
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 5.6e-18 95.5 147 35.4
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 5.6e-18 95.5 172 30.8
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 7.3e-18 95.1 191 30.9
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.3e-17 94.4 144 37.5
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.3e-17 94.4 201 30.8
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.3e-17 94.4 199 33.7
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.6e-17 94.0 200 34.0
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.6e-17 94.0 150 32.0
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.1e-17 93.6 154 35.7
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 6.2e-17 92.0 198 29.3
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 6.2e-17 92.0 147 34.7
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 6.2e-17 92.0 147 34.7
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.4e-16 90.9 143 34.3
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.4e-16 90.9 144 36.8
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.1e-16 89.7 153 34.0
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.1e-16 89.7 196 29.6
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.1e-16 89.7 160 30.6
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 3.1e-16 89.7 153 34.0
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 4.0e-16 89.4 145 35.9
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 4.0e-16 89.4 147 33.3
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.0e-16 89.4 143 34.3
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 9.0e-16 88.2 150 37.3
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-15 87.8 153 33.3
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-15 87.8 153 32.7
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-15 87.8 153 33.3
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-15 87.8 153 32.7
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-15 87.8 153 33.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.2e-15 87.8 144 34.7
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-15 87.4 153 33.3
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.5e-15 87.4 153 33.3
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 4.5e-15 85.9 145 33.1
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.7e-14 84.0 155 30.3
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.7e-14 84.0 146 31.5
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 3.8e-14 82.8 166 35.5
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.4e-13 80.9 147 32.0
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.6e-12 75.9 146 28.8
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.5e-07 60.8 81 40.7
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 5.8e-07 58.9 96 37.5
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 6.4e-06 55.5 81 34.6


User provided reference genes

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