Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 0.0e+00 1338.6 678 100.0
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 0.0e+00 1142.1 723 80.4
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 0.0e+00 1110.1 723 79.5
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 1.6e-307 1058.9 723 74.0
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 4.8e-299 1030.8 723 71.9
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 2.4e-295 1018.5 722 71.1
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 3.5e-294 1014.6 724 71.5
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.1e-292 1009.6 723 70.8
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 4.3e-292 1007.7 726 71.1
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 3.6e-291 1004.6 723 70.3
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 4.8e-291 1004.2 727 70.2
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 8.1e-291 1003.4 723 70.5
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 5.3e-290 1000.7 723 69.4
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 1.2e-289 999.6 723 69.7
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 4.2e-287 991.1 722 69.7
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 9.3e-287 989.9 723 69.4
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 9.3e-287 989.9 724 69.6
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 1.8e-285 985.7 727 69.7
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 2.3e-285 985.3 723 69.6
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 5.1e-285 984.2 727 68.6
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 8.7e-285 983.4 704 71.7
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 1.5e-281 972.6 723 68.2
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 2.6e-281 971.8 723 67.9
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 3.4e-281 971.5 725 67.9
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.7e-280 969.1 690 71.6
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 3.8e-280 968.0 719 68.8
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 1.9e-279 965.7 723 67.1
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 3.2e-279 964.9 726 67.6
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.1e-278 962.2 726 67.6
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 4.6e-278 961.1 792 64.3
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.8e-277 959.1 726 67.2
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 3.9e-277 958.0 720 67.4
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 5.1e-277 957.6 720 67.4
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.1e-276 956.4 726 66.8
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 9.6e-276 953.4 726 67.6
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.6e-275 952.6 684 70.3
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 2.8e-275 951.8 727 66.9
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 3.7e-275 951.4 729 67.1
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 6.2e-275 950.7 833 60.9
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.5e-273 946.0 723 68.0
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 2.0e-273 945.7 723 67.5
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 3.4e-273 944.9 721 66.2
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 3.4e-273 944.9 736 66.7
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 4.5e-273 944.5 730 67.3
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 5.0e-272 941.0 723 66.4
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 2.1e-270 935.6 721 64.9
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 6.1e-270 934.1 697 67.4
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 5.1e-269 931.0 723 66.5
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 1.5e-268 929.5 716 66.2
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 3.3e-268 928.3 723 65.1
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 7.4e-268 927.2 718 65.3
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 9.0e-266 920.2 724 65.3
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.0e-265 919.1 725 65.2
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.2e-262 909.8 721 63.2
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 1.8e-261 906.0 694 65.9
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 5.1e-261 904.4 724 63.8
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 4.3e-260 901.4 719 64.8
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 2.4e-258 895.6 728 65.2
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 5.9e-257 891.0 650 71.1
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 1.1e-255 886.7 722 64.4
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 1.4e-255 886.3 731 63.3
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 3.6e-254 881.7 733 61.9
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 1.7e-251 872.8 723 63.1
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 1.7e-251 872.8 621 71.7
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 3.1e-250 868.6 682 63.6
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 4.1e-242 841.6 722 58.2
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 1.3e-235 820.1 719 57.4
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 8.3e-235 817.4 722 57.1
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 2.2e-232 809.3 723 57.0
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 3.8e-232 808.5 723 57.1
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.5e-231 806.6 722 56.8
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 3.2e-231 805.4 721 56.3
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 5.5e-231 804.7 722 56.2
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 5.5e-231 804.7 722 56.2
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 5.5e-231 804.7 722 56.2
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 5.5e-231 804.7 722 56.2
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 1.4e-229 800.0 722 55.8
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 1.8e-229 799.7 722 55.8
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 5.9e-225 784.6 716 57.4
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.7e-224 783.1 716 57.4
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 3.6e-222 775.4 621 63.3
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 8.6e-192 674.5 587 61.0
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 1.2e-188 664.1 720 51.4
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 5.4e-186 655.2 662 52.7
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 3.3e-183 646.0 664 49.7
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.8e-182 642.9 628 54.8
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.4e-181 640.6 479 67.4
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 3.1e-181 639.4 657 51.3
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 7.1e-178 628.2 658 49.2
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.5e-167 594.0 506 63.4
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 3.3e-167 592.8 405 74.3
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 7.1e-162 575.1 402 72.4
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.3e-155 554.3 597 51.6
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 3.1e-149 533.1 645 46.7
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 1.0e-136 491.5 618 42.6
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 6.5e-131 472.2 425 58.8
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.3e-123 448.0 429 52.0
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 3.1e-117 426.8 339 64.0
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 8.5e-115 418.7 379 58.8
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 1.2e-113 414.8 253 73.9
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.8e-113 413.7 349 63.9
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 1.3e-107 394.8 312 66.0
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 5.6e-106 389.4 532 42.5
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.0e-104 385.2 391 50.1
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 2.6e-103 380.6 378 55.3
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 7.5e-103 379.0 296 65.2
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.1e-101 375.2 476 46.8
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 5.0e-99 366.3 268 69.0
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 5.6e-98 362.8 229 77.3
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 5.3e-56 223.4 236 51.3
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 5.3e-56 223.4 160 73.8
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 4.2e-53 213.8 153 70.6
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.9e-48 196.4 210 49.0
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 9.3e-45 186.0 137 62.8
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 5.7e-34 150.2 758 23.9
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 2.2e-30 138.3 84 70.2
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 9.1e-24 116.3 104 57.7
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 9.4e-21 106.3 71 70.4
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 3.0e-19 101.3 69 66.7
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 5.2e-19 100.5 644 23.6
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 8.8e-11 73.2 66 65.2
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 8.2e-09 66.6 45 60.0
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 1.0e-06 59.7 45 66.7


User provided reference genes

Program Settings