Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 3.2e-201 705.3 471 100.0
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 5.2e-119 432.2 478 60.5
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 3.4e-118 429.5 477 69.0
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 6.8e-111 405.2 491 67.6
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.4e-110 402.5 480 61.2
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.4e-103 380.9 484 62.0
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.4e-102 376.3 486 60.3
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.3e-101 374.4 486 61.5
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.4e-95 354.4 478 57.7
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 2.0e-94 350.5 484 60.7
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 3.7e-93 346.3 488 58.8
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 9.2e-92 341.7 486 64.0
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 3.5e-91 339.7 486 60.1
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.0e-90 338.2 489 58.1
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.1e-89 334.7 483 59.0
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.9e-89 334.0 488 59.2
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 4.3e-89 332.8 484 56.8
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.3e-89 332.8 484 57.6
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 9.5e-89 331.6 487 58.9
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 9.5e-89 331.6 491 59.9
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.1e-88 330.5 482 59.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.1e-88 328.6 489 59.1
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.1e-87 328.2 490 57.8
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.1e-87 328.2 493 60.2
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.4e-87 327.8 493 59.0
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.5e-86 324.3 494 55.5
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.6e-86 322.0 479 56.4
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 9.9e-86 321.6 487 59.1
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 9.9e-86 321.6 478 57.5
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.3e-85 321.2 478 56.9
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.7e-85 320.9 490 59.8
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.2e-85 320.5 492 55.7
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 2.9e-85 320.1 475 60.2
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 3.8e-85 319.7 485 56.1
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 3.8e-85 319.7 485 56.5
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 6.4e-85 318.9 507 57.6
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.1e-84 318.2 487 57.9
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.2e-84 316.6 483 56.7
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 7.1e-84 315.5 483 58.4
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 9.2e-84 315.1 485 54.6
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 6.0e-83 312.4 502 54.4
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.0e-82 311.6 484 59.9
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 3.0e-82 310.1 479 56.8
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.9e-82 309.7 488 55.3
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 6.6e-82 308.9 488 55.5
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.6e-82 308.9 488 55.3
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.7e-82 308.5 479 56.6
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.9e-81 307.4 495 59.2
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 2.5e-81 307.0 512 55.5
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.3e-80 304.7 491 53.4
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.3e-80 304.7 493 58.4
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.8e-80 303.5 460 56.7
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 4.7e-80 302.8 492 60.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.7e-80 302.8 488 60.0
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.4e-79 301.2 507 52.1
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.4e-79 301.2 530 53.4
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.4e-79 300.4 485 54.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 9.0e-79 298.5 488 58.8
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-78 298.1 484 59.7
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 2.0e-78 297.4 488 60.0
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.1e-76 291.6 495 54.5
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 2.4e-76 290.4 503 56.5
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 3.2e-76 290.0 505 54.7
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 3.2e-76 290.0 482 57.1
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 7.1e-76 288.9 487 55.6
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 2.7e-75 287.0 487 55.6
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.5e-75 286.6 495 54.7
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.7e-74 284.3 468 55.3
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.7e-74 284.3 497 57.9
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 3.0e-74 283.5 480 57.1
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 5.1e-74 282.7 484 58.3
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 8.7e-74 282.0 489 58.1
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.5e-73 281.2 486 53.7
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 9.6e-73 278.5 487 56.1
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.6e-72 277.7 479 53.4
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.6e-72 277.7 485 58.4
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 2.8e-72 276.9 502 56.0
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.1e-71 273.5 490 56.7
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.3e-71 272.7 484 57.0
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.5e-70 271.2 484 54.3
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 4.5e-70 269.6 480 56.0
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.3e-69 268.1 486 51.9
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 3.8e-69 266.5 488 54.1
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.6e-67 261.2 487 53.0
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.1e-67 260.8 495 53.5
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.0e-66 258.5 483 51.3
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.0e-66 258.5 497 56.5
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.9e-66 256.5 511 46.8
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 5.1e-66 256.1 489 52.1
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.1e-63 248.4 497 52.1
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.0e-61 241.9 499 51.3
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 2.9e-61 240.4 488 51.2
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 5.5e-60 236.1 486 50.4
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.1e-60 235.7 484 53.7
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 6.0e-59 232.6 487 56.9
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 2.3e-58 230.7 483 52.4
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.5e-57 228.0 496 47.4
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.5e-57 228.0 488 49.8
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 6.2e-56 222.6 494 48.2
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 5.3e-55 219.5 490 51.2
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.4e-54 216.9 494 44.9
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 4.5e-54 216.5 489 49.9
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 7.6e-54 215.7 486 46.9
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 4.9e-53 213.0 485 47.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.7e-51 207.2 493 46.5
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 6.1e-51 206.1 491 49.1
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.0e-50 205.3 488 49.8
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.3e-50 204.9 494 46.8
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.8e-50 204.5 482 45.0
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 7.4e-49 199.1 491 47.0
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.3e-48 198.4 487 48.3
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 6.3e-48 196.1 320 56.2
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 9.0e-47 192.2 484 46.1
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 2.1e-43 181.0 126 75.4
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.1e-43 179.5 173 66.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 6.1e-43 179.5 116 78.4
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.4e-42 178.3 107 83.2
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 8.8e-42 175.6 529 45.2
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 9.7e-41 172.2 433 45.5
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.1e-39 168.7 97 84.5
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.4e-39 167.5 312 48.7
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 7.7e-38 162.5 273 53.5
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.5e-33 148.3 129 62.0
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.5e-33 148.3 544 39.3
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 3.7e-32 143.7 242 57.4
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 5.0e-29 133.3 132 65.9
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 6.5e-29 132.9 109 75.2
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.2e-27 128.6 514 42.8
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.7e-27 127.5 127 63.8
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 5.2e-26 123.2 102 70.6
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 4.4e-25 120.2 236 52.5
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 5.7e-25 119.8 81 71.6
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 2.8e-24 117.5 468 34.2
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 6.3e-24 116.3 74 78.4
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.8e-23 114.8 105 69.5
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.1e-23 113.6 191 55.0
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.7e-16 90.5 97 60.8
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 3.2e-12 77.4 337 38.6
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.2e-12 76.3 46 84.8
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.7e-11 73.6 117 51.3
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 6.1e-11 73.2 73 63.0
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 6.1e-11 73.2 73 63.0
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 2.6e-09 67.8 75 58.7
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-06 58.5 114 62.3


User provided reference genes

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