Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.0e-171 606.7 309 100.0
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.8e-83 313.5 254 65.7
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.7e-83 311.6 254 66.1
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.0e-82 310.1 252 64.7
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.8e-80 303.5 250 64.4
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 4.1e-80 302.4 254 63.4
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 3.8e-78 295.8 253 62.8
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 6.5e-78 295.0 251 64.1
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 9.4e-77 291.2 253 60.1
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.2e-76 290.8 250 62.8
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 1.2e-76 290.8 252 60.3
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 2.1e-76 290.0 252 61.9
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.6e-76 289.3 253 61.3
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 4.7e-76 288.9 251 60.2
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 6.1e-76 288.5 255 61.2
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 6.1e-76 288.5 250 60.8
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 6.1e-76 288.5 275 56.7
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 7.9e-76 288.1 253 60.1
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.0e-75 287.7 253 61.3
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.0e-75 287.7 252 61.5
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 1.0e-75 287.7 254 60.6
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 3.0e-75 286.2 253 61.3
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 3.9e-75 285.8 270 58.1
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 3.9e-75 285.8 255 59.2
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 6.7e-75 285.0 253 60.9
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 6.7e-75 285.0 252 59.9
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.1e-74 284.3 251 59.8
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.1e-74 284.3 249 60.2
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.5e-74 283.9 250 60.0
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.5e-74 283.9 252 60.3
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 3.3e-74 282.7 249 59.4
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 4.4e-74 282.3 250 60.0
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 5.7e-74 282.0 253 59.7
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.7e-74 282.0 253 60.1
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 5.7e-74 282.0 247 61.1
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 5.7e-74 282.0 250 61.2
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 7.4e-74 281.6 252 60.3
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.4e-74 281.6 252 61.1
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 9.7e-74 281.2 249 59.4
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.3e-73 280.8 252 58.7
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 2.2e-73 280.0 252 58.3
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.2e-73 280.0 250 60.0
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.2e-73 280.0 251 61.0
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 2.8e-73 279.6 251 60.6
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 3.7e-73 279.3 252 58.3
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.7e-73 279.3 251 61.0
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 3.7e-73 279.3 249 59.4
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 4.8e-73 278.9 250 61.2
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 4.8e-73 278.9 252 60.7
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 8.2e-73 278.1 246 58.5
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 8.2e-73 278.1 252 57.9
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 8.2e-73 278.1 239 61.9
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 8.2e-73 278.1 252 59.5
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 8.2e-73 278.1 252 58.7
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 1.1e-72 277.7 252 58.3
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 2.4e-72 276.6 252 57.5
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 2.4e-72 276.6 253 56.5
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 5.3e-72 275.4 250 58.4
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 5.3e-72 275.4 250 60.0
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 7.0e-72 275.0 250 57.6
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 9.1e-72 274.6 252 57.1
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 9.1e-72 274.6 252 59.1
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.2e-71 274.2 257 58.4
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.6e-71 273.9 251 59.8
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 2.6e-71 273.1 248 59.3
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 2.6e-71 273.1 262 58.0
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.5e-71 272.7 248 58.1
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 5.9e-71 271.9 245 58.0
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 7.7e-71 271.6 252 57.1
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.0e-70 271.2 246 59.8
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 2.2e-70 270.0 254 57.5
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 3.8e-70 269.2 251 57.8
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.8e-70 269.2 252 56.7
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 5.0e-70 268.9 256 57.0
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 5.0e-70 268.9 252 57.9
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 6.5e-70 268.5 271 55.7
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 8.5e-70 268.1 261 56.3
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.1e-69 267.7 254 56.7
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.5e-69 267.3 254 57.9
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 3.2e-69 266.2 256 56.6
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.2e-69 266.2 252 56.7
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.5e-69 265.4 252 56.7
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 5.5e-69 265.4 247 56.3
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.6e-68 263.8 253 55.7
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.7e-68 263.1 249 56.2
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 6.1e-68 261.9 256 54.7
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.4e-67 260.8 243 58.4
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 3.0e-67 259.6 253 54.9
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 4.0e-67 259.2 256 54.7
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 6.7e-67 258.5 250 54.8
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.0e-66 256.9 258 53.9
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 2.6e-66 256.5 249 54.6
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 3.3e-66 256.1 249 55.8
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 4.4e-66 255.8 248 55.2
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 5.7e-66 255.4 249 54.6
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 5.7e-66 255.4 249 54.6
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.3e-65 254.2 254 57.5
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.2e-65 253.4 247 57.1
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 3.7e-65 252.7 254 53.1
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 4.8e-65 252.3 249 53.8
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 2.4e-64 250.0 249 53.8
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 2.4e-64 250.0 251 54.2
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 5.3e-64 248.8 270 52.2
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 7.0e-64 248.4 253 52.6
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.2e-63 247.7 248 52.0
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.2e-63 247.7 252 53.6
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 7.7e-63 245.0 246 51.6
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.7e-62 243.8 186 65.1
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.9e-61 240.4 246 52.4
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 1.6e-60 237.3 181 65.2
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.0e-59 234.6 177 65.5
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 8.8e-59 231.5 243 53.5
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 3.4e-58 229.6 252 49.2
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 4.4e-58 229.2 206 59.2
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 2.6e-50 203.4 253 46.2
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 3.4e-50 203.0 123 77.2
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 5.7e-50 202.2 243 46.5
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 8.3e-49 198.4 131 68.7
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 8.3e-49 198.4 224 51.8
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.5e-47 192.6 247 47.4
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 4.5e-47 192.6 262 43.9
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 1.3e-46 191.0 116 75.9
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 1.4e-43 181.0 298 38.9
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.2e-42 177.9 192 52.6
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 3.4e-42 176.4 241 42.7
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.4e-33 145.6 100 68.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.2e-31 141.4 272 33.5
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 5.2e-27 125.9 183 42.1
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 1.9e-24 117.5 278 33.5
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 4.3e-13 79.7 43 83.7
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.2e-10 71.6 38 84.2
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 4.4e-10 69.7 141 33.3
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 5.4e-08 62.8 95 41.1
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 1.6e-07 61.2 40 70.0
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 4.6e-07 59.7 49 61.2
QL10p031514 Quercus lobata HOM05D005618 ORTHO05D337805 3.9e-06 56.6 71 47.9


User provided reference genes

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