Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 3.1e-212 742.3 622 100.0
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 5.2e-151 538.9 631 84.0
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.2e-144 517.7 638 81.7
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.8e-143 513.8 638 81.8
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 9.2e-140 501.5 637 81.9
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 3.5e-91 340.1 647 69.1
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 2.8e-88 330.5 638 69.9
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.8e-87 327.8 643 67.8
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 2.6e-86 323.9 651 66.5
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 5.9e-86 322.8 650 68.0
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.0e-85 322.0 646 67.2
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.2e-84 317.0 635 68.2
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 2.1e-83 314.3 658 66.7
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 5.1e-82 309.7 647 67.1
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 8.8e-82 308.9 651 67.3
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 8.8e-82 308.9 642 68.1
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 4.3e-81 306.6 648 67.0
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.7e-80 304.7 642 67.8
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 3.7e-80 303.5 646 67.6
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 3.7e-80 303.5 645 67.3
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 8.2e-80 302.4 647 66.2
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 1.4e-79 301.6 617 70.2
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.8e-79 301.2 647 66.5
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 2.4e-79 300.8 636 67.9
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 2.4e-79 300.8 650 66.6
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 4.1e-79 300.1 648 67.0
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 9.1e-79 298.9 649 66.3
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.0e-78 297.7 651 65.6
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 3.4e-78 297.0 645 65.4
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 3.4e-78 297.0 645 65.4
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 4.5e-78 296.6 648 67.1
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.0e-77 295.4 646 66.4
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.3e-77 295.0 652 65.6
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 1.7e-77 294.7 645 67.0
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 3.8e-77 293.5 651 66.1
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 5.0e-77 293.1 651 66.1
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.1e-76 292.0 646 66.1
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.5e-76 290.8 651 65.7
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 3.2e-76 290.4 643 65.6
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 9.4e-76 288.9 644 66.0
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.1e-75 287.7 622 66.6
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.7e-75 287.3 647 66.0
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.7e-75 287.3 622 66.6
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 3.6e-75 287.0 645 65.0
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 3.6e-75 287.0 648 66.4
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 3.6e-75 287.0 649 66.1
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.8e-74 284.6 646 65.6
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.0e-73 281.2 656 65.7
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.0e-73 281.2 651 65.3
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.6e-73 280.8 649 64.9
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 4.1e-71 273.5 648 65.4
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 2.6e-70 270.8 647 64.9
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.3e-69 268.5 636 64.8
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 5.0e-69 266.5 641 65.5
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 5.0e-69 266.5 650 65.2
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 6.5e-69 266.2 649 64.7
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 1.9e-68 264.6 638 64.6
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 9.4e-68 262.3 622 66.1
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 1.2e-67 261.9 637 65.3
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.6e-67 261.5 654 64.2
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 1.6e-67 261.5 638 64.9
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.7e-67 260.8 643 65.5
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 4.7e-67 260.0 635 66.3
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.4e-66 258.5 640 64.7
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.8e-66 258.1 584 69.2
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 5.2e-66 256.5 636 64.2
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.5e-65 255.0 637 65.0
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 4.8e-64 250.0 644 62.3
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 6.3e-64 249.6 644 62.7
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 6.3e-64 249.6 644 62.7
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 2.4e-63 247.7 619 64.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 1.2e-62 245.4 609 67.0
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.6e-62 245.0 644 64.3
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.6e-62 245.0 644 64.3
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 2.6e-62 244.2 638 62.4
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.5e-62 243.8 628 64.5
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 1.0e-61 242.3 617 66.6
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.8e-61 240.4 594 65.2
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 6.5e-61 239.6 653 63.1
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 9.4e-60 235.7 615 65.0
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 9.4e-60 235.7 615 65.0
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 2.1e-59 234.6 590 67.6
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 2.7e-59 234.2 645 63.7
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.8e-58 231.5 640 63.1
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.2e-57 228.8 653 62.6
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 5.7e-57 226.5 652 62.7
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 1.3e-56 225.3 644 63.5
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.2e-56 224.6 647 51.9
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.1e-55 222.2 629 63.4
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.1e-55 222.2 637 64.7
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 4.2e-52 210.3 631 62.0
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 9.4e-52 209.1 645 57.7
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.5e-49 201.8 646 60.2
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 4.8e-48 196.8 256 45.3
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.4e-47 195.3 643 61.3
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 1.4e-47 195.3 640 61.1
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.4e-47 193.4 631 62.1
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 5.4e-47 193.4 639 61.7
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 5.4e-47 193.4 642 60.9
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.7e-46 191.0 630 61.6
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 2.7e-46 191.0 647 55.5
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 4.5e-46 190.3 641 60.8
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 2.3e-45 188.0 624 61.7
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 2.3e-45 188.0 633 41.7
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 3.3e-44 184.1 260 42.3
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 4.2e-44 183.7 646 59.8
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 7.2e-44 183.0 629 60.9
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 6.1e-43 179.9 631 60.4
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.0e-42 179.1 633 61.1
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.8e-42 178.3 630 60.8
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 4.0e-42 177.2 650 60.6
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.4e-41 174.1 614 61.7
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 5.7e-41 173.3 644 60.1
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.3e-40 172.2 242 43.0
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-40 172.2 624 61.1
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 3.8e-37 160.6 642 58.7
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 1.1e-36 159.1 647 54.9
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 9.5e-36 156.0 227 69.6
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 3.1e-34 151.0 613 60.5
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 3.1e-34 151.0 613 60.5
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 9.8e-33 146.0 446 75.8
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 9.8e-33 146.0 621 59.1
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.3e-32 145.6 238 41.2
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 2.4e-31 141.4 612 59.3
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 9.2e-31 139.4 621 59.9
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 2.0e-30 138.3 613 60.4
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 4.6e-30 137.1 613 60.0
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 6.0e-30 136.7 241 43.2
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 1.0e-29 136.0 626 47.6
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.0e-29 136.0 622 58.7
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 5.6e-28 130.2 621 57.8
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 8.0e-27 126.3 214 42.5
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.0e-26 124.0 645 56.9
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.6e-25 121.3 624 58.2
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.3e-24 119.0 260 38.1
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 1.3e-24 119.0 642 57.5
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.7e-24 118.6 236 39.8
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.4e-23 114.8 237 36.7
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 9.2e-23 112.8 235 37.4
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.6e-22 112.1 219 39.3
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 2.1e-22 111.7 234 38.0
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 2.7e-22 111.3 596 56.9
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.7e-22 111.3 237 36.3
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 2.8e-19 101.3 212 37.3
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 1.1e-18 99.4 237 38.0
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 1.4e-18 99.0 206 38.3
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 2.3e-18 98.2 620 58.4
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 2.3e-18 98.2 497 48.7
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.2e-18 97.1 96 57.3
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 1.5e-17 95.5 620 58.2
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 4.9e-16 90.5 220 36.4
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 4.1e-15 87.4 231 32.0
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 5.4e-15 87.0 237 33.3
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.4e-15 87.0 154 37.7
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.2e-14 85.9 603 56.7
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 6.0e-14 83.6 237 33.3
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.7e-13 82.0 243 32.9
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 5.1e-13 80.5 193 35.2
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 8.6e-13 79.7 84 56.0
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 8.6e-13 79.7 84 56.0
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 3.3e-12 77.8 105 43.8
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-11 75.9 217 34.6
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 1.2e-11 75.9 217 34.6
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 2.8e-11 74.7 205 33.7
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.1e-10 72.8 84 53.6
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 1.4e-10 72.4 193 33.2
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 2.4e-10 71.6 135 42.2
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 4.0e-10 70.9 48 66.7
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.7e-08 65.5 248 27.4
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 6.4e-08 63.5 264 27.7
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 6.4e-08 63.5 138 34.8
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 6.4e-08 63.5 196 30.1
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 8.4e-08 63.2 271 28.8
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 1.1e-07 62.8 198 28.8
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 1.9e-07 62.0 68 54.4
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 1.9e-07 62.0 195 31.8
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.9e-07 62.0 199 28.6
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 2.4e-07 61.6 209 30.6
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 4.2e-07 60.8 258 26.4
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 5.4e-07 60.5 241 28.6
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.1e-06 58.5 248 27.4
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.7e-06 58.2 220 29.5
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 3.5e-06 57.8 237 29.1
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 4.6e-06 57.4 198 27.3
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 4.6e-06 57.4 198 27.3
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 4.6e-06 57.4 149 30.2
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 7.8e-06 56.6 189 29.6


User provided reference genes

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