Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 9.8e-208 726.5 348 100.0
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 5.3e-169 597.8 347 83.6
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 6.5e-159 564.3 348 79.3
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 5.7e-155 551.2 313 85.3
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.2e-150 535.4 355 73.2
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 5.1e-148 528.1 349 73.6
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.5e-147 526.6 372 68.5
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.5e-147 525.8 348 71.8
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.7e-147 524.6 373 70.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.7e-146 521.9 348 73.3
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 8.2e-146 520.8 352 72.7
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.1e-145 518.8 370 70.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 3.1e-145 518.8 346 72.3
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.5e-144 516.5 348 71.8
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.5e-144 516.5 356 71.6
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.4e-144 515.4 346 71.7
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 5.9e-144 514.6 359 71.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.3e-143 513.5 347 71.5
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 2.2e-143 512.7 347 72.3
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 2.2e-143 512.7 348 72.1
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.9e-143 512.3 348 71.3
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 3.8e-143 511.9 348 70.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.0e-143 511.5 349 70.8
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.0e-143 511.5 349 70.8
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 5.0e-143 511.5 365 70.7
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 5.0e-143 511.5 346 71.7
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.1e-142 510.4 354 71.2
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.9e-142 509.6 347 72.3
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 2.5e-142 509.2 350 71.4
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.1e-141 506.1 350 70.6
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.1e-141 506.1 349 71.3
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 2.7e-141 505.8 356 69.9
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.7e-141 505.8 359 69.1
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 2.7e-141 505.8 364 69.8
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.6e-141 505.4 359 69.1
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 6.1e-141 504.6 355 69.6
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 6.1e-141 504.6 349 70.5
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.0e-140 503.8 348 70.7
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.4e-140 503.4 348 70.7
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.4e-140 503.4 351 70.1
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.3e-140 502.7 350 70.0
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.3e-140 502.7 362 68.8
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.3e-140 502.7 350 69.4
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.3e-140 502.7 350 69.4
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.9e-140 501.9 353 70.0
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 6.7e-140 501.1 348 70.1
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.1e-139 500.4 347 71.2
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.5e-139 500.0 327 73.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.6e-139 499.2 347 69.7
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.6e-139 499.2 374 67.6
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.3e-139 498.8 351 70.4
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.3e-139 498.8 353 69.7
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 3.3e-139 498.8 355 68.7
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 5.7e-139 498.0 355 68.7
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 7.4e-139 497.7 363 69.4
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.3e-138 496.9 363 69.1
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.2e-138 496.1 357 69.2
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 6.3e-138 494.6 366 68.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 5.3e-137 491.5 360 68.6
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 5.3e-137 491.5 356 68.8
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 7.0e-137 491.1 355 67.3
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.5e-136 490.0 358 69.0
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.5e-136 490.0 350 68.9
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.5e-136 490.0 342 72.2
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.0e-136 489.6 355 69.3
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.0e-135 487.3 355 67.3
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.0e-135 487.3 365 66.0
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.9e-135 485.7 342 70.2
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 6.5e-135 484.6 347 69.7
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 6.5e-135 484.6 370 68.1
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 6.5e-135 484.6 363 66.4
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-134 483.4 353 67.7
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.5e-134 483.4 353 67.7
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.9e-134 483.0 342 68.4
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 3.2e-134 482.3 352 68.8
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.2e-134 481.9 350 67.7
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 2.7e-133 479.2 351 69.2
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.7e-133 478.4 350 68.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 6.1e-133 478.0 373 65.1
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.0e-132 477.2 352 67.3
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.8e-132 476.5 347 66.9
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.0e-132 475.7 350 67.4
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 8.8e-132 474.2 351 67.2
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 3.3e-131 472.2 351 67.5
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 4.8e-130 468.4 346 68.2
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 4.8e-130 468.4 351 67.0
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-129 467.2 351 67.8
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.8e-129 466.5 351 66.4
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.1e-129 465.3 347 68.3
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.1e-129 465.3 347 68.3
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 7.0e-129 464.5 351 67.8
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-128 463.8 351 67.5
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.6e-128 463.4 347 66.9
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 3.5e-128 462.2 347 68.0
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.7e-127 459.9 349 67.0
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.2e-127 459.5 350 67.1
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.1e-126 457.2 365 63.0
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 9.4e-126 454.1 358 65.1
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.1e-125 453.0 376 64.6
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.7e-125 452.6 343 66.8
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 4.7e-125 451.8 343 66.8
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.0e-124 450.7 347 64.0
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 3.0e-124 449.1 343 66.5
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.2e-124 448.4 374 59.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 6.8e-124 448.0 361 60.9
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.5e-123 446.8 414 56.3
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.5e-123 446.8 362 63.5
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 2.0e-123 446.4 325 67.4
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 9.8e-123 444.1 347 64.6
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 2.2e-122 443.0 372 60.2
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.1e-121 440.7 353 64.9
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 2.4e-121 439.5 347 65.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.6e-120 436.8 347 62.5
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.5e-120 435.3 342 66.1
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.2e-119 433.0 351 64.1
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.1e-118 430.6 346 64.5
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.2e-118 427.9 347 63.7
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 8.0e-117 424.5 350 60.6
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 3.0e-116 422.5 349 62.2
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.4e-115 419.1 301 73.1
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.2e-114 416.4 521 47.0
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 2.8e-114 416.0 339 62.5
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 4.9e-114 415.2 358 58.9
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.1e-113 412.5 379 58.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 7.0e-113 411.4 328 65.5
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.9e-111 406.0 327 65.1
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 4.3e-110 402.1 362 58.0
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 6.1e-109 398.3 366 57.9
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.4e-108 397.1 433 52.0
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.6e-107 392.9 324 61.4
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.6e-107 392.9 313 64.5
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.1e-105 387.5 415 52.0
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.6e-101 373.6 361 53.7
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.0e-95 354.4 341 55.1
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 6.2e-93 345.1 349 53.6
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 8.1e-85 318.2 375 46.4
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 7.6e-83 311.6 365 47.4
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.4e-81 305.4 240 62.9
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.7e-71 273.9 373 42.4
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 8.7e-71 271.6 379 42.2
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.1e-69 266.9 346 45.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 3.6e-69 266.2 162 74.1
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.4e-68 264.2 235 54.9
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 6.9e-68 261.9 252 57.1
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 6.9e-68 261.9 252 57.1
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 3.5e-64 249.6 388 39.7
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.1e-62 244.6 231 64.1
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.4e-59 233.0 218 61.9
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.8e-58 229.6 217 58.1
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 3.5e-56 223.0 193 60.6
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 6.9e-52 208.8 172 64.0
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 2.6e-51 206.8 134 76.1
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.1e-44 184.9 128 63.3
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 7.4e-38 162.2 372 31.7
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.8e-37 159.5 88 78.4
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-34 151.4 350 32.3
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.9e-31 139.8 122 57.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.7e-26 124.4 72 73.6
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.3e-18 98.2 81 63.0
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.2e-16 91.7 63 69.8
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.0e-07 62.0 33 72.7


User provided reference genes

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