Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231810 Amaranthus hybridus HOM05D007367 ORTHO05D008866 4.8e-91 337.8 171 100.0
EL10Ac8g19394 Beta vulgaris HOM05D007367 ORTHO05D008866 4.7e-54 214.9 176 62.5
AUR62030407 Chenopodium quinoa HOM05D007367 ORTHO05D008866 2.9e-43 179.1 168 56.0
Hund14309 Selenicereus undatus HOM05D007367 ORTHO05D008866 3.9e-32 142.1 185 45.9
GSVIVG01036886001 Vitis vinifera HOM05D007367 ORTHO05D008866 1.1e-31 140.6 165 47.9
Sc07g0008020 Simmondsia chinensis HOM05D007367 ORTHO05D008866 4.0e-29 132.1 159 47.8
Thecc.03G320300 Theobroma cacao HOM05D007367 ORTHO05D008866 9.9e-28 127.5 170 44.1
RcHm_v2.0_Chr7g0215331 Rosa chinensis HOM05D007367 ORTHO05D008866 2.9e-27 125.9 171 42.7
Prupe.5G013300 Prunus persica HOM05D007367 ORTHO05D008866 8.4e-27 124.4 163 41.7
MSTRG.25748 Avicennia marina HOM05D007367 ORTHO05D008866 1.4e-26 123.6 149 45.6
SalBow4G0967 Salvia bowleyana HOM05D007367 ORTHO05D008866 1.4e-26 123.6 166 45.8
FAN08G2564 Fragaria x ananassa HOM05D007367 ORTHO05D008866 2.4e-26 122.9 160 43.8
THA.LOC104811080 Tarenaya hassleriana HOM05D007367 ORTHO05D008866 5.4e-26 121.7 164 42.7
Aa31LG6G1950 Aethionema arabicum HOM05D007367 ORTHO05D008866 1.2e-25 120.6 172 40.1
AT4G19350 Arabidopsis thaliana HOM05D007367 ORTHO05D008866 1.2e-25 120.6 171 41.5
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 1.6e-25 120.2 175 38.9
FvH4_5g25140 Fragaria vesca HOM05D007367 ORTHO05D008866 3.5e-25 119.0 160 42.5
Ciclev10012881m.g Citrus clementina HOM05D007367 ORTHO05D008866 4.6e-25 118.6 169 44.4
Actinidia32792 Actinidia chinensis HOM05D007367 ORTHO05D008866 6.0e-25 118.2 153 45.8
CARHR226150 Cardamine hirsuta HOM05D007367 ORTHO05D008866 7.9e-25 117.9 171 42.1
MD03G1130300 Malus domestica HOM05D007367 ORTHO05D008866 1.0e-24 117.5 161 41.6
AL7G34810 Arabidopsis lyrata HOM05D007367 ORTHO05D008866 1.3e-24 117.1 171 41.5
Duzib068G0439 Durio zibethinus HOM05D007367 ORTHO05D008866 1.3e-24 117.1 158 44.3
FAN13G0070 Fragaria x ananassa HOM05D007367 ORTHO05D008866 1.3e-24 117.1 160 41.9
Cc08_g05930 Coffea canephora HOM05D007367 ORTHO05D008866 3.0e-24 115.9 143 44.1
COL.COLO4_16748 Corchorus olitorius HOM05D007367 ORTHO05D008866 3.9e-24 115.5 172 40.1
Dinv37431 Davidia involucrata HOM05D007367 ORTHO05D008866 3.9e-24 115.5 161 43.5
SGA_v2.0_scaffold89G27372 Striga asiatica HOM05D007367 ORTHO05D008866 6.7e-24 114.8 161 41.6
Sp7g17960 Schrenkiella parvula HOM05D007367 ORTHO05D008866 8.7e-24 114.4 171 40.4
Manes.10G067900 Manihot esculenta HOM05D007367 ORTHO05D008866 1.1e-23 114.0 155 44.5
CANSAT01G1692 Cannabis sativa HOM05D007367 ORTHO05D008866 1.9e-23 113.2 160 40.6
QL93p0143_0020 Quercus lobata HOM05D007367 ORTHO05D008866 5.6e-23 111.7 174 37.9
Carub.0007s2188 Capsella rubella HOM05D007367 ORTHO05D008866 9.6e-23 110.9 171 39.2
Potri.004G235300 Populus trichocarpa HOM05D007367 ORTHO05D008866 9.6e-23 110.9 164 39.0
BraA01t01068Z Brassica rapa HOM05D007367 ORTHO05D008866 1.6e-22 110.2 171 38.6
QL12p003620 Quercus lobata HOM05D007367 ORTHO05D008866 1.6e-22 110.2 174 37.4
A01p11220 Brassica napus HOM05D007367 ORTHO05D008866 3.7e-22 109.0 171 38.0
BcaNung01789 Brassica carinata HOM05D007367 ORTHO05D008866 4.8e-22 108.6 169 40.2
Gohir.D12G204000 Gossypium hirsutum HOM05D007367 ORTHO05D008866 4.8e-22 108.6 138 45.7
Gorai.008G218800 Gossypium raimondii HOM05D007367 ORTHO05D008866 4.8e-22 108.6 138 45.7
Medtr8g075140 Medicago truncatula HOM05D007367 ORTHO05D008866 4.8e-22 108.6 172 37.8
Migut.A00520 Erythranthe guttata HOM05D007367 ORTHO05D008866 6.2e-22 108.2 156 41.0
TWI38G2056 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 1.1e-21 107.5 162 42.6
BcaC09g51422 Brassica carinata HOM05D007367 ORTHO05D008866 1.4e-21 107.1 171 39.2
Nn1g01985 Nelumbo nucifera HOM05D007367 ORTHO05D008866 1.8e-21 106.7 154 42.2
MELO3C016218.2 Cucumis melo HOM05D007367 ORTHO05D008866 3.1e-21 105.9 160 38.1
Peaxi162Scf00876g00431 Petunia axillaris HOM05D007367 ORTHO05D008866 3.1e-21 105.9 152 38.8
CiPaw.11G074200 Carya illinoinensis HOM05D007367 ORTHO05D008866 4.0e-21 105.5 174 37.9
Lalb_Chr16g0391641 Lupinus albus HOM05D007367 ORTHO05D008866 5.3e-21 105.1 166 39.8
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 6.9e-21 104.8 180 37.2
arahy.Tifrunner.gnm1.ann1.H9MF1T Arachis hypogaea HOM05D007367 ORTHO05D008866 9.0e-21 104.4 162 35.8
BolC1t01302H Brassica oleracea HOM05D007367 ORTHO05D008866 9.0e-21 104.4 171 38.0
TWI38G0281 Tripterygium wilfordii HOM05D007367 ORTHO05D008866 9.0e-21 104.4 161 41.6
Solyc12g096170.2 Solanum lycopersicum HOM05D007367 ORTHO05D008866 1.2e-20 104.0 163 40.5
TAR374G1177 Trochodendron aralioides HOM05D007367 ORTHO05D008866 1.2e-20 104.0 155 40.6
CAN.G947.33 Capsicum annuum HOM05D007367 ORTHO05D008866 1.5e-20 103.6 177 36.2
Cfa012305 Carpinus fangiana HOM05D007367 ORTHO05D008866 1.5e-20 103.6 161 38.5
C01p13270 Brassica napus HOM05D007367 ORTHO05D008866 2.6e-20 102.8 166 38.6
Glyma.02G045600 Glycine max HOM05D007367 ORTHO05D008866 2.6e-20 102.8 169 36.7
ClCG07G011120 Citrullus lanatus HOM05D007367 ORTHO05D008866 3.4e-20 102.4 166 38.0
Glyma.16G123600 Glycine max HOM05D007367 ORTHO05D008866 4.5e-20 102.1 165 35.8
Lsat_1_v5_gn_5_43721 Lactuca sativa HOM05D007367 ORTHO05D008866 4.5e-20 102.1 162 38.3
CDE02G0575 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 5.8e-20 101.7 148 39.9
Gohir.A12G201200 Gossypium hirsutum HOM05D007367 ORTHO05D008866 5.8e-20 101.7 138 43.5
ECA246G3716 Erigeron canadensis HOM05D007367 ORTHO05D008866 1.7e-19 100.1 137 39.4
Lj4g0011102 Lotus japonicus HOM05D007367 ORTHO05D008866 1.7e-19 100.1 172 34.3
Os08g0162500 Oryza sativa ssp. japonica HOM05D007367 ORTHO05D008866 6.5e-19 98.2 143 37.8
FAN04G0859 Fragaria x ananassa HOM05D007367 ORTHO05D008866 1.4e-18 97.1 160 38.1
Aqoxy7G01946 Aquilegia oxysepala HOM05D000773 ORTHO05D008866 2.5e-18 96.3 162 35.8
CsaV3_4G007130 Cucumis sativus L. HOM05D007367 ORTHO05D008866 3.2e-18 95.9 163 37.4
FAN18G1407 Fragaria x ananassa HOM05D007367 ORTHO05D008866 4.2e-18 95.5 160 37.5
Sed0007825 Sechium edule HOM05D007367 ORTHO05D008866 4.2e-18 95.5 142 38.7
unitig_748.g8147 Utricularia gibba HOM05D007367 ORTHO05D008866 4.2e-18 95.5 174 34.5
Psat4g102200 Pisum sativum HOM05D007367 ORTHO05D008866 9.3e-18 94.4 172 32.6
TPR.G19504 Trifolium pratense HOM05D007367 ORTHO05D008866 1.2e-17 94.0 169 34.9
DCAR_002187 Daucus carota HOM05D007367 ORTHO05D008866 2.1e-17 93.2 105 52.4
HanXRQChr02g0034081 Helianthus annuus HOM05D007367 ORTHO05D008866 3.5e-17 92.4 154 37.7
PGR042G2818 Punica granatum HOM05D007367 ORTHO05D008866 1.3e-16 90.5 151 38.4
arahy.Tifrunner.gnm1.ann1.I4PABW Arachis hypogaea HOM05D007367 ORTHO05D008866 1.8e-16 90.1 190 31.1
VMungo0251G1728 Vigna mungo HOM05D007367 ORTHO05D008866 6.7e-16 88.2 153 34.6
Zm00001eb415480 Zea mays HOM05D007367 ORTHO05D008866 6.7e-16 88.2 155 36.8
Phvul.003G266000 Phaseolus vulgaris HOM05D007367 ORTHO05D008866 5.7e-15 85.1 177 32.2
HPP92_022724 Vanilla planifolia HOM05D007367 ORTHO05D008866 2.8e-14 82.8 149 34.2
Atru.chr8.2637 Acer truncatum HOM05D007367 ORTHO05D008866 8.2e-14 81.3 160 34.4
vmacro00097 Vaccinium macrocarpon HOM05D007367 ORTHO05D008866 1.8e-13 80.1 93 48.4
PGSC0003DMG400029288 Solanum tuberosum HOM05D007367 ORTHO05D008866 2.4e-13 79.7 176 35.2
PSO063G4690 Papaver somniferum HOM05D007367 ORTHO05D008866 3.1e-13 79.3 152 37.5
Nitab4.5_0011129g0040 Nicotiana tabacum HOM05D007367 ORTHO05D008866 1.7e-11 73.6 122 36.9
PSO675G5685 Papaver somniferum HOM05D007367 ORTHO05D008866 2.2e-11 73.2 118 39.8
Thhalv10026808m.g Eutrema salsugineum HOM05D007367 ORTHO05D008866 1.4e-10 70.5 108 36.1
CDE11G0580 Ceratophyllum demersum HOM05D007367 ORTHO05D008866 2.5e-10 69.7 113 37.2
Thecc.04G178000 Theobroma cacao HOM05D000090 ORTHO05D001322 1.6e-09 67.0 118 39.8
Eucgr.E01150 Eucalyptus grandis HOM05D007367 ORTHO05D008866 2.5e-07 59.7 84 40.5
Nitab4.5_0001913g0180 Nicotiana tabacum HOM05D007367 ORTHO05D008866 3.3e-07 59.3 99 38.4
Oeu046776.1 Olea europaea HOM05D007367 ORTHO05D008866 5.7e-07 58.5 88 38.6
Cpa.g.sc103.6 Carica papaya HOM05D007367 ORTHO05D008866 6.3e-06 55.1 82 40.2


User provided reference genes

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